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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0259300 |
| Transcript ID | LotjaGi6g1v0259300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT3G17060.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9LSP1|PME67_ARATH Probable pectinesterase 67; TrEMBL-Plants: tr|A0A151RCS3|A0A151RCS3_CAJCA Pectinesterase; Found in the gene: LotjaGi6g1v0259300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:57215663..57219394) extracted from Lotus japonicus Gifu genome v1.2.
CTTTATAACATTTTTTAAAAATAACACAACATTAGGATATATAGTATGTTAAAAGTAACCCCTTACCTTGTGTAATAATA ATGCAACTATAAAATGAACTTATGGACGTCCTCCAATATAGAGAGGAAGGTGCAACCAACCCTTTGTCCTTTCATTCATT AGCGCTCAATTTTACCTTCCTAACATCTTCACTCCAAAAATAAAGAATGTCCCTCCCACATAAGAGCCTCACATTTCCCA TTAATTCATGCATCACACAATAACCACGATAACCCCTAAATCATTCTACCTCAACCCCAACATGGCTTGTTCTTCTTCAT CGTGGTTTCATGCTTCAACATTCACACCGCAAATTATCATATTCGTCTTCTTCTGCATTTCATGTTGCGCTCTTGGCTTC GACGCACAAAATGTCATAGACTCCCCTTTGTTAACACAAAAGTTAGGAATTAATCGCACCATCAAAGTAGATATCAATGG AAATGGTGACTTCAAATCTGTCCAAGCTGCTATTGATTCCATTCCTGATGGAAATCCCGGTTGGGTCATCGTCCATGTTA GGAAAGGAGTGTATAGGTACAAAGTCATTAATATCACGTTTCAATTATAAAATACAAAAAATTCTTCCATAATTGATTCT GATTTTATAATTAAATTGTAAAATGATATTCAAACGCGCGCTAATGTGTGCACTGTTTTTTTGCTTTAATCAAATACTAG CAAGCAATTAATTATTTGTTAATTTTATTTTCATCTTGATCATGAGCAGAGAAAAGGTGCATATACCAGAGACTAAGCCT CATATATTCATGAGAGGGAATGGCAAAGGAAAAACTGCCATAGTTTGGTCCGAGAGCTCTTCTGACAACAATGCTTCTGC TACCTTCAAAGTAGAAGCTCCTGATTTCATTGCTTTTGGAATAAGCTTCAAGGTATGTGATTCCCATAAACTACGTGCAA TTTCAACCCTGCATCTACCTATTCATGTGATATTTATTACTACAATTTTAATTAAAATTTTGCCTCTTACCACATGAGGG TTTCTTGTGGTAAGCACAATGTGATTGAAATCTTCTATCTCAAATGCTATCTTAATTTCATGCCTCACCCATAAAATTCT GACACATCAAGATTTCATTGGTCTAACACGAAATTAAGACGCTATTTGGGGACAGAAAGTCTTGATCCAGGTTCAATGAG GGGTAAAAATAGTAAAGCTATAGGAATTGAAGGTTTATATTAACCAGAACAATGATGATTATATATGAATTGATGATGAT TAAGCCAAAAGAAGTAACATTTCTGAGTTATTGTGCATTGCAGAATGATGCACCAACAGGGGTTGCCTATACCTCTCAGA ATCAATCAGTGGCAGCATTTGTGGCAGCAGACAAAGCGGCATTTTACCATTGTGCATTTTACAGCACTCATAACACTCTC TTTGATTACAAAGGCAGACATTATTATGAGTCATGTTACATTCAAGGTTCCATCGATTTCATATTTGGCCGTGGCAGATC CATCTTCCAGGTAACTCAATTAGTAGCCTTTCCTTATCTCCAAAGTTGGTTTTAGATTTAGAATCAATAGTAGAAGAATT TCCAAACATGCACTAAATCACGTGTATTTATTTACGGTACAGGGTTGTGAAATATTTGTGGTTGATGACAAAAGGACGCC AATCAAGGGGTCAGTCACAGCTCAAAACAGGGAAAGTGAAACTGAGATTAGTGGGTTTATCTTCAACAAATGCAAGGTTT ATGGCATTGGAGGGGTGTACCTGGGAAGAGCCAAGGGTCCTTATTCTAGGGTAATTTTTGCCAAGTCATATCTCTCCATG ACCATTGTCCCAGAAGGGTGGACCAATTGGAGCTATCCTGGGAGCACAAAGTAAGTGCTCATTTGAAAATTCATTTACAA TTCATTCTAAAGTTAAAATTAATTATGGCGGGCAGTTTCTTTAGTGTGATCGCGATACTTATTAATTAATTGTGGTAATT TATGTGAACTGTAGAAATTTATACCTTGCGGAGTACAAGTGCCATGGTCCCGGAGCCACGACGGAGAAACGCGCTTCTTG GTCAAGACAGCTTAGTGATGAAGAAGCTGCTCAATTTTTATCTGTTGATTACATTGATGGCAAGAATTGGTTGCCAGTTT GGTTATAAATCTCACTGTTCTGCTGCACAAGCTCTTACATCATATAAATATGGAAAATGATGGCACATATCATATCAAAT GGACTCTTAAACATGCAATTGGATTGTTTGTTTAGAAAAAGCATTCACAATTATGTATATCAAAGCACACTGTGCATGTA CTTTATAGTGCTACAGAGACTTCAGATTTATGCATGCATATGCATATATAGCTAGCTTAGATAGAGTTCAAGTTGTTAAG AACTGTTTTCCATGTACCTTAATTCTATGACTTGTTAGTTGTTACTTCACAAGTTGATTTGTATTAAACAAGAAACATAT GCTACCAAGTGTTTATCAGTTAAGCGCTTATTATTGATGAGAAGTTTATTGAATAAACAAAATAAATTTATAGATAATTG ATTATGATACTAATTAATCATAAGAGAATGCACAAATCTTCATAAAACTTGGGATTTTTTATTTCACTATCAATAATCGT TACAGCATTATATTAGACTTAATTTCTCCATCATTAGATGAGCATCACAAAACTCCATATTTATTTAATTCATCTGTTGT ACGTACTTGCATATTGCCACTATGAAAGTGTATCTCATCTTGCATAGAAACATGATATCATAAGGATCTAAGAACTTAAA ATCCACCGCCAATTCCTCCACCACCGCCGGCACCACCGCCACCACCAACTCCTCCTCCAAAACCTCCGCCAGCGCCTCCT CCGGCTCCGCCACCTCCACCAACTCCACCTCCAAAGCCGCCACCAGCACCAGCACCTCCGCCAGCTCCTCCTCCAATACC GCCACCATGTCCTCCTCCTATACCTCCGCCAGCTCCACCACCTGCACCTCCTCCAATGCCACCACCATGTCCACCTCCAA TGCCTCCTCCTTTACCACCTCCAAACCCACCACCAGCACCACCTCCAGCTCCGCCACCTCCTCCAATGCCACCACCATGT CCTCCTCCAAAGCCACCTCCTGCTCCGCCACCACCACCAGCTCCTCCTCCAATGCCGCCACCGTGTCCACCTCCAATTCC ACCACCTCCACCTGCTCCTCCTCCAATGCCGCCACCGTGTCCACCTCCAATTCCACCATGTCCACCTCCAATGCCACCAC CGTGTCCACCTCCAAATCCTCCTCCAGCACCACCACCATGCCCACCTCCAATACCACCACCACCGCCCTTGCCACCTCCA AATCCTCCTCCAGCACCGCCACCATGCCCACCTCCTATACCACCACCACCACCCTTTCCACCTCCAAACCCTCCTCCAGC ACCACCACCATGCCCACCTCCTAGACCACCACCACCTCCTCCACCAAACCCTCCTCCGCCACCAAAACCACCACCCCTAT TACCATCAACTATCTCATCTTCTCCAAGTCTTCGGCACTCAGCTACTCCTATCACCAACACGAACAACAATGCAAGAGTT CCAACATGCCTATGTAGCTTAACCATCTTTCTTTAATTAGAGAAAACAAAGCTAGCTAGATATGCTTGTTTGTATCTTGG AAGCTCTCAAGGAGTGGTATTTATAGTGGAAATTGGGAGAGTGAAAGTACTG
CDS sequence (LotjaGi6g1v0259300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATCACACAATAACCACGATAACCCCTAAATCATTCTACCTCAACCCCAACATGGCTTGTTCTTCTTCATCGTGGTT TCATGCTTCAACATTCACACCGCAAATTATCATATTCGTCTTCTTCTGCATTTCATGTTGCGCTCTTGGCTTCGACGCAC AAAATGTCATAGACTCCCCTTTGTTAACACAAAAGTTAGGAATTAATCGCACCATCAAAGTAGATATCAATGGAAATGGT GACTTCAAATCTGTCCAAGCTGCTATTGATTCCATTCCTGATGGAAATCCCGGTTGGGTCATCGTCCATGTTAGGAAAGG AGTGTATAGAGAAAAGGTGCATATACCAGAGACTAAGCCTCATATATTCATGAGAGGGAATGGCAAAGGAAAAACTGCCA TAGTTTGGTCCGAGAGCTCTTCTGACAACAATGCTTCTGCTACCTTCAAAGTAGAAGCTCCTGATTTCATTGCTTTTGGA ATAAGCTTCAAGAATGATGCACCAACAGGGGTTGCCTATACCTCTCAGAATCAATCAGTGGCAGCATTTGTGGCAGCAGA CAAAGCGGCATTTTACCATTGTGCATTTTACAGCACTCATAACACTCTCTTTGATTACAAAGGCAGACATTATTATGAGT CATGTTACATTCAAGGTTCCATCGATTTCATATTTGGCCGTGGCAGATCCATCTTCCAGGGTTGTGAAATATTTGTGGTT GATGACAAAAGGACGCCAATCAAGGGGTCAGTCACAGCTCAAAACAGGGAAAGTGAAACTGAGATTAGTGGGTTTATCTT CAACAAATGCAAGGTTTATGGCATTGGAGGGGTGTACCTGGGAAGAGCCAAGGGTCCTTATTCTAGGGTAATTTTTGCCA AGTCATATCTCTCCATGACCATTGTCCCAGAAGGGTGGACCAATTGGAGCTATCCTGGGAGCACAAAAAATTTATACCTT GCGGAGTACAAGTGCCATGGTCCCGGAGCCACGACGGAGAAACGCGCTTCTTGGTCAAGACAGCTTAGTGATGAAGAAGC TGCTCAATTTTTATCTGTTGATTACATTGATGGCAAGAATTGGTTGCCAGTTTGGTTATAA
Protein sequence (LotjaGi6g1v0259300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHHTITTITPKSFYLNPNMACSSSSWFHASTFTPQIIIFVFFCISCCALGFDAQNVIDSPLLTQKLGINRTIKVDINGNG DFKSVQAAIDSIPDGNPGWVIVHVRKGVYREKVHIPETKPHIFMRGNGKGKTAIVWSESSSDNNASATFKVEAPDFIAFG ISFKNDAPTGVAYTSQNQSVAAFVAADKAAFYHCAFYSTHNTLFDYKGRHYYESCYIQGSIDFIFGRGRSIFQGCEIFVV DDKRTPIKGSVTAQNRESETEISGFIFNKCKVYGIGGVYLGRAKGPYSRVIFAKSYLSMTIVPEGWTNWSYPGSTKNLYL AEYKCHGPGATTEKRASWSRQLSDEEAAQFLSVDYIDGKNWLPVWL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 31 | 31 | - | – | |
| Phobius | 32 | 51 | 20 | - | – | |
| Phobius | 52 | 366 | 315 | - | – | |
| PANTHER | 59 | 362 | 304 | 3.0E-112 | – | |
| PANTHER | 59 | 362 | 304 | 3.0E-112 | – | |
| Gene3D | 66 | 365 | 300 | 1.7E-97 | ||
| SUPERFAMILY | 68 | 364 | 297 | 3.84E-84 | ||
| Pfam | 73 | 358 | 286 | 2.6E-65 | ||
| ProSitePatterns | 217 | 226 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi6g1v0259300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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