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LotjaGi6g1v0261000.1

Overview

Field Value
Gene ID LotjaGi6g1v0261000
Transcript ID LotjaGi6g1v0261000.1
Lotus japonicus genome version Gifu v1.2
Description Poly(A) polymerase; TAIR: AT3G06560.1 poly(A) polymerase 3; Swiss-Prot: sp|Q56XM9|PAPS3_ARATH Nuclear poly(A) polymerase 3; TrEMBL-Plants: tr|A0A1J7ILW7|A0A1J7ILW7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0261000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:57359910..57365090) extracted from Lotus japonicus Gifu genome v1.2.

AGGCAAGCTATGAAGTTGAAAGACAAGAGATAGAGCAGTGAAAGAAAAGATGAAGATTGCAAAGAGAGGGTGTTGTGTTG TGATTACTAAGTATAGGCTTAGGAGATTTTCTTATTAAGATTATGGTCTCAAACAGAAAATCGATGTTTTTAGAAATTAT TAACGCATGAATCGTTGTCATTACTTGTTGTCTTTACCTTGAAAATCATTATTTTTGGGTTTAGCATTTTTGGAGAGGGG TTTTGCCAACTTGTATGGAATTGGAACCTCCAACCTCTCCCCCAATTCAAACTGGCATCGTTTTGGATCATCCTCCACCA CCACCACCACCGTTTTCTGTATTTCACCACCGTTTTCTACCACCACCGTCCCGGGCATTTCTTCCATTTCCTCTGAACCC ATCATTTTTCTTTGCAATGGATAGCCAGAGGTCTATATCTCTCCTTCAGGTGAACCCCTTTTCTTCTCTTGGTATTTTTT TCAGGGTTTTTGGTTTAGGTACCTTAATGTTTGAATTTTTTTTTGTGGGGTTTGTTCAATCATGTGCAGTTCATGGCTGA TGAAGGGCTTGTTCCATCACCAGAAGAGGAAGAGAAAAGGAAAAACGCTATTCAAAAGCTCAAACAGGTTTTCAATTTTT TATATTTTTTTTGTTAATGTTCCATACTTCTTTGGTCAATACATGATTTGTGGTTGGGATGCATTGTTGTTCATTTTCCT TAAGGGCTTCATTCTTTGCATGTAGAATAAAAGAAAAATGTGTAGGAGGCTGTATTTTTTTTTTGTGTGTGTGTGTGAAT GGGGAGGCCTAAAGGCCTAGGAACAAGGAGGAAACAACTACCAAAACTATGGAAGAAACTTAATCAAACATGAAAGGTAC TAAGCAAACAGAGGACAGGATCACAGGACATCAAAAGTGATAGTTTGCCTATCAAGCAAGACTTAGACCAAACTAAAGCA TTTGCAACAAAGTTAGCTTCCCTGAAATCTTTTGAAGATCTGTCATGAGATATTTAATCTGGTTTATGAGACTTGCACAA GAATGTGTTGATTTGCACCCAACATCCAAAAGTCGCATGCACTCGCTGAGTCAGATTCAATACTAAATTCATATATCCTT GAGCTCTGCAGCTTAATACCCAAAAGATCAGTCCATAACTCCGAATGTGCATAGCCGAACAAGGTCCTGGATGCCTGGAA TAAGCAAAAAATAAAAGCACCATAATGATCTTGAACCACACCCCCGCACTCCATCACAATTATGTTGGAACACCTTCTGT GCGAGCACAACAACGAACCAGGACCTATTAAGCAGGATCACCCTCTAAAAGAATATTATCACCTTCCATAAAGACTACCC TGAGGCTAAGAGTACTAGCTTGCACCATTATTTGACTTTATTGAGCATGCTCATCCATACATATGCTTAGCTGTGTTTGT ATTTTTCTCAGAAATCAATAGGACCGTGTTTGTGTGATATTTGCATGTGTTTGACTGAAAATTGTACGACAACATTGTGC CCTTACTTCAACAAGGATATGTGCTAAAATGAGATGCATTTTTTGTTATGTATGATAATTTTTGTAAGCATGGATAATTT TTTAAGGAGTTTATCGTTGCTATGAGAATGGTTTTAGCATTTTAAGGCACTGAAATTCCATTTCGTGTAAATTCTATCAA TAATTATTAAATATGTTAATAAATTAAAATAGCGTTACTTTGGTCATGAAATTGTTGTAAGTTTTTCAAATTGCACTAAT TAGTGAACTTATATATTCGATGGTAAGTTTTACACCAGAAACCACCACATAGCTAAAAATGTGGAACGTTTTTTTCACAA CGATAACTTTATGAATTTCCTGTCCATGTGAGGAAAATTTATATTGCGTGTTAAGAGTATCTGTATTTGTTTGTTTACTA AATTTCTTGTATCTCACAATGTTTTTTTATGCAATTTGTAATACCGTCGTGATGGTATGCTTATTACAGATAGTCTCATC ATGGATCAAGAAGGTTGCATGGCAGCATCGACTACCGAAGCACCAGATTGCTGTTACATCTGCTACCATATTGACATATG GATCTTATGGCCTTGGAGTAAGTGTTTCCCTCATACCACTCGATTTCCTTAGTCTAAGTTGAGAGCTACATAATTTGTCA AGTTAAGATTTCCCTTAACTTATTGTCATTTGATAGTTAAACATGTGTACAAATCTAAAGATAATTTTCTCTTCTAAACT TATAATAATGTTTAGGTTCACAGCTCAGAGTCTGATATTGATGCTTTATGTGTTGCTCCTTTCTATGCATCCATTGCAGT AAGTAAATTGTATTTCTCTCTCTTATACATCATTTTCTTTTTGGCTCTGTAGTACTTATTTTGATTTTCATGGGGAATGC AATTAATACAGGAAGACTTTTTTGTTGTGTTGCATCACATGCTTAAGAGGAGACCTGAAGTATCAGAGATCCTTTGTGTC AAGAGCGCAAAAGTCCCTCTTATCCGATTTAAATTTGATGGGATTTCCATTGATCTTCCATACGCTCGGCTTAAAGTACT ATATGTTCCTGAGGTCAGTATAAAGAAACATGATTAATCTAGTTCTGAAACTTTTGTCAGGTGCATGTGTGGATATCTTA AAATTTGTGAAATTAATGCTATAAAATTTTGCAAAATAATGTCTTTGGATTATAGAGGTGGTGTGTTAGTGTATTGACAT TATATTTTAGCAATCATAACACTTTTTTATATTTAATATTCTTTTGAGCTTGATTTGTTAAAAAAATAATTACTTTAATG ATGTTAGCAATTATCCTACAGAATGTTGACATACTAAATCCATTCTTCATGAGGAATATTGACGACACTAGCTGGAAAAG CTTGTCTGGTGTACGAGCAAATAAACGCATTCTGCAACTAGTTCCAAATGTTGAGGTATGATGGATTTTTGTCCTTTATT TTCTCCATAACAAAGAAAATAATCATATTCATAAACAATTGAACAATTATCTAGATGATGCGAAGGACTCAAAATATCCC AACTTTTGTTGTTGTTCTTGTAATTGTAAATCTCCCCCTTTTCTATGCATCATTGTGGTCTCTTATATGCGAAACTCATG TCTGTCAGAATTTTCAATCTGTGCTACGGTGTCTTAAATTATGGGCAAAAAGACGAGGAGTGTATGGAACTGTAAGTGAA TTTGTTCGTTTAAGTAATGTTTACTTCCATAGCTTGATTCATGCATGAACTCAACTTTTATGACTCACATGAAGCAAAAT TTTGGTTTGCAGTTACTTGGTTATTTGGGAGGAGTTCATTTGGCAGTTCTTGTAGCTTATGTTTGTCAAAGACACCCTGA TGCCACCTTAAATGGTCTAATTGCGAACTTTTTTCGAACATTTGCATTTTGGCCTTGGCCTACACCAGTGATGCTGCAGG AAGGAATGTTACCAACAGTTGTAGATGCTATAGAAACACGATCCTTCATGCCTATTCTGTTGCCATCTAGCCCTTACGAG TATTGTCATTCAAATATAACTAAAAGCACATTCTACAGGATCAGAGCTGAGTTTCTACGGGGACATAATATAACAAGGGT ATGTTATCTTATTTAACTCAGGACTCCATTTTGGTATACATTTGTTGCTTGTGTAAATACTTTTATTTAGAGCCACTTAA TTGAAATGCTTTGCAAATTGTATTTACTTGGGCAACTATAAATGGAGTTGAACCTCCTATTTTCTTGTTGATGAATTACA TAACATGGAAGCTTAATTAAAAAAAAACCCTTGATGTATGTCTTTTGCTCATTTTATTTATTTCATCTTATTGAAGGATC TTTCAAAACCAGATTTCATTTGGGATATTGTATTCGAGCTTTTTCCATACTCAAAAAGATATACACAATTTGTCAAGATT TACCTCTCTACTCCCGATCAACGTGCGCTTGGAGACTGGGTTGGATGGGTGAAGTCACGCTTCCGCGGTCTTCTTGGCAT TGTAAGTAGCTTAAACGATAAACTTAGCTATCTCATATAGCCATGGTTACTTTGGCATGAGAAGATGTGTGAAACAATGT AGAAGAAATGACTATGATTCTGCTTCACTCACTGCAATTACAGAAGAAAAATATTTTACTTTTTATTTATTAAATATTTC ACTATTACTTAACCTGATGAACTTGGCATAGAAATCATGAAGTCTCCAGTAAACTTAGCTATCTCAAATAGTCATGGTTA CTTTGGCATTAGAAGATGTGTGGAACAATGTAGATAATTGACTATGATTGTGCTTCACTCACTGCAATTACAGAAGAAAA ATATTTTTTTATTTGTAAATATACTATTACTTAACCTGATGAACTTGGCATAAAATTAAAAAGTCCTTCTATTGATTGGG AACTTGTGAATGTGATCGTGAATCATCAAAGGGCATTACTACCTTTCTATATATTTTATCATCATTTTCATATATTGTTT TATTTGTTGCAGTTGGAGGGGGTTCAAGGTTTTTGTGACCCTAACCCTACAGAATATGTTGACACTAATAAAACGGAGCC AAATGTGGTTTTCTATTGGGGCTTGCAACATGACAAGTATAACTTAGTGGACATAGATTTGGTTGAGGGAGAGTTCATGA AGATTATCAACAATGGCTATGAAGGTTCTCTTGGAAAAATGGAGTTGTCCATCCTGTTAGCTTCTCAACTGCCTAAGAAT TCTCAATTTGATGAAAGGTCTGTTAAGGGTAGAAAAACATGTTGGAGGATAATTGATTATGATAAGAAAAGGAGCCATGT CTACTCTAACCATCTTCCACATTGCCTTATTGGCCATGTGACACCTAGTAGCGAGGCTGAATGCCTGAGTTCTGGTAGCT AGATTGGGTTTTTATTTATCTTGAGCTTGATGTATGTAATGTAGCCATGTATAATCTTTTATTTTTCCTTCTTTCTTGTA TTCTGGCTTCTTGGCTTAGTAGGAGCATAGGTTACATGACATCTGTTGAATGAGTAGTCTTTAGTCATACATAGCTAGAG GGGTCTAGGAAATGTAAAGTGAAGTGAGATATTTTGCCATTCAAGCTTTAGTGTTTGATGAATAATGATTCATTCACACT TTCCTATTCGTGTTTGATAGAGGTTTTTCTTTCTTTCACAATATATTTTTCATTTCATCCA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0261000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAATTGGAACCTCCAACCTCTCCCCCAATTCAAACTGGCATCGTTTTGGATCATCCTCCACCACCACCACCACCGTT TTCTGTATTTCACCACCGTTTTCTACCACCACCGTCCCGGGCATTTCTTCCATTTCCTCTGAACCCATCATTTTTCTTTG CAATGGATAGCCAGAGGTCTATATCTCTCCTTCAGTTCATGGCTGATGAAGGGCTTGTTCCATCACCAGAAGAGGAAGAG AAAAGGAAAAACGCTATTCAAAAGCTCAAACAGATAGTCTCATCATGGATCAAGAAGGTTGCATGGCAGCATCGACTACC GAAGCACCAGATTGCTGTTACATCTGCTACCATATTGACATATGGATCTTATGGCCTTGGAGTTCACAGCTCAGAGTCTG ATATTGATGCTTTATGTGTTGCTCCTTTCTATGCATCCATTGCAGAAGACTTTTTTGTTGTGTTGCATCACATGCTTAAG AGGAGACCTGAAGTATCAGAGATCCTTTGTGTCAAGAGCGCAAAAGTCCCTCTTATCCGATTTAAATTTGATGGGATTTC CATTGATCTTCCATACGCTCGGCTTAAAGTACTATATGTTCCTGAGAATGTTGACATACTAAATCCATTCTTCATGAGGA ATATTGACGACACTAGCTGGAAAAGCTTGTCTGGTGTACGAGCAAATAAACGCATTCTGCAACTAGTTCCAAATGTTGAG AATTTTCAATCTGTGCTACGGTGTCTTAAATTATGGGCAAAAAGACGAGGAGTGTATGGAACTTTACTTGGTTATTTGGG AGGAGTTCATTTGGCAGTTCTTGTAGCTTATGTTTGTCAAAGACACCCTGATGCCACCTTAAATGGTCTAATTGCGAACT TTTTTCGAACATTTGCATTTTGGCCTTGGCCTACACCAGTGATGCTGCAGGAAGGAATGTTACCAACAGTTGTAGATGCT ATAGAAACACGATCCTTCATGCCTATTCTGTTGCCATCTAGCCCTTACGAGTATTGTCATTCAAATATAACTAAAAGCAC ATTCTACAGGATCAGAGCTGAGTTTCTACGGGGACATAATATAACAAGGGATCTTTCAAAACCAGATTTCATTTGGGATA TTGTATTCGAGCTTTTTCCATACTCAAAAAGATATACACAATTTGTCAAGATTTACCTCTCTACTCCCGATCAACGTGCG CTTGGAGACTGGGTTGGATGGGTGAAGTCACGCTTCCGCGGTCTTCTTGGCATTTTGGAGGGGGTTCAAGGTTTTTGTGA CCCTAACCCTACAGAATATGTTGACACTAATAAAACGGAGCCAAATGTGGTTTTCTATTGGGGCTTGCAACATGACAAGT ATAACTTAGTGGACATAGATTTGGTTGAGGGAGAGTTCATGAAGATTATCAACAATGGCTATGAAGGTTCTCTTGGAAAA ATGGAGTTGTCCATCCTGTTAGCTTCTCAACTGCCTAAGAATTCTCAATTTGATGAAAGGTCTGTTAAGGGTAGAAAAAC ATGTTGGAGGATAATTGATTATGATAAGAAAAGGAGCCATGTCTACTCTAACCATCTTCCACATTGCCTTATTGGCCATG TGACACCTAGTAGCGAGGCTGAATGCCTGAGTTCTGGTAGCTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0261000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MELEPPTSPPIQTGIVLDHPPPPPPPFSVFHHRFLPPPSRAFLPFPLNPSFFFAMDSQRSISLLQFMADEGLVPSPEEEE KRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGLGVHSSESDIDALCVAPFYASIAEDFFVVLHHMLK RRPEVSEILCVKSAKVPLIRFKFDGISIDLPYARLKVLYVPENVDILNPFFMRNIDDTSWKSLSGVRANKRILQLVPNVE NFQSVLRCLKLWAKRRGVYGTLLGYLGGVHLAVLVAYVCQRHPDATLNGLIANFFRTFAFWPWPTPVMLQEGMLPTVVDA IETRSFMPILLPSSPYEYCHSNITKSTFYRIRAEFLRGHNITRDLSKPDFIWDIVFELFPYSKRYTQFVKIYLSTPDQRA LGDWVGWVKSRFRGLLGILEGVQGFCDPNPTEYVDTNKTEPNVVFYWGLQHDKYNLVDIDLVEGEFMKIINNGYEGSLGK MELSILLASQLPKNSQFDERSVKGRKTCWRIIDYDKKRSHVYSNHLPHCLIGHVTPSSEAECLSSGS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 256 256 - –
PANTHER
PTHR10682:SF33
19 537 519 7.4E-247 –
PANTHER
PTHR10682
19 537 519 7.4E-247 –
SUPERFAMILY
SSF81301
46 233 188 9.0E-40
IPR043519
Gene3D
G3DSA:1.10.1410.10
55 376 322 2.0E-102 –
Pfam
PF04928
55 377 323 3.8E-55
IPR007012
Gene3D
G3DSA:3.30.460.10
74 230 157 2.0E-102
IPR043519
CDD
cd05402
81 195 115 1.43516E-22 –
SUPERFAMILY
SSF81631
237 377 141 5.49E-43 –
Phobius
TRANSMEMBRANE
257 278 22 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
279 547 269 - –
SUPERFAMILY
SSF55003
379 492 114 1.69E-18
IPR011068
Gene3D
G3DSA:3.30.70.590
380 486 107 1.6E-6 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0004652
Molecular function Polynucleotide adenylyltransferase activity Catalysis of the template-independent extension of the 3'- end of an RNA or DNA strand by addition of one adenosine molecule at a time. Cannot initiate a chain 'de novo'. The primer, depending on the source of the enzyme, may be an RNA or DNA fragment, or oligo(A) bearing a 3'-OH terminal group.
Subterm of
GO:0016779
Molecular function Nucleotidyltransferase activity Catalysis of the transfer of a nucleotidyl group to a reactant.
Subterm of
GO:0031123
Biological process RNA 3'-end processing Any process involved in forming the mature 3' end of an RNA molecule.
Subterm of
GO:0043631
Biological process RNA polyadenylation The enzymatic addition of a sequence of adenylyl residues at the 3' end of an RNA molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0261000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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