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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0261700 |
| Transcript ID | LotjaGi6g1v0261700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT5G49610.1 F-box family protein; Swiss-Prot: sp|Q9FGY4|FB341_ARATH F-box protein At5g49610; TrEMBL-Plants: tr|I3SMT1|I3SMT1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0261700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:57416038..57417375) extracted from Lotus japonicus Gifu genome v1.2.
TCGCCTCGGTTTTTCCTTCAACAAAACGCTTGCGTTTCATGATGATCACTGTTATTCGATTACCCCCTCTTCAAATGTAA TCAAACCCCTTTTTCCACAACTGCAGCACCTTCATCGGATCCCCCAAAAAAATTCCCGGTAAGCATAGTCGAATCATCTT TACCTCGTTTTTTAGATACCCAGAAATTTATTTTCTTATTATCTTATTAATTTTCTGTTATTTAGATTACGTTTTCATCA TTGGGGGTTTCAATTATGGATAAACGAGGAGATGGGATTTTCCCGGATGAGGTGGTTATGCAGATTCTTGCAAGGTTGCC TGTGAAATCCCTTTTCAGGAGCAAAACCGTGTGCAAATTGTGGTGTAGATTGTCCTCAGATAAGTATTTTGTTCAACTCT ACAATGAGGTATCTAGGAAGAATCCCATGATTCTTGTTGAGATTTCTGATACATCAGAGTCCAAATCTAGCTTAATCTGT GTTGATAGTTTAAGGGGTGTTTCTGAATTTTCACTCAGCTTTTTGAATGATAGAGTTAAGGTTCGTGCATCTTGTAATGG CTTGTTGTGTTGCTCTAGTATTCCTGATAAGGGTGTGTTCTATGTTTGCAACCCGGTCACTCGCGAGTTTAGGCTGCTTC CCAGGAGTAGGGAAAGGCATGTCACTCGGTTTTACCCCGATGGCGAAGCGACCTTGGTTGGATTGGCCTGTGATTCGACG TGCCAGAGGTTTAATGTTGTTCTCGCGGGCTGCCACCGCACGTTTGGTCATAGGCCGGATGGAAGTTTCATATGTCTGGT GTTTGATTCGGAGCTGAACAAGTGGAGGAAGTTTGTTTCTTTTCAGGATGATCATTTTACTCACATGAATAAGAACCAAG TTGTTTTTGTGAATAATGCTCTGCACTGGTTGACTGTTAGCTCTACTTATATACTTGTGCTTGATTTAAGCTGTGACAAT TGGAGGAAGATGCCGTTACCGTATGACTTGGTTCGAGGAACGGGAAATAGGATTTATCTCTTGGACTTCAATGGCTGCCT TTCTATTATTCAAATTTCAGAAGCGTGGATGAACATTTGGGTGCTGAAAGATTACTGGAATGATGAATGGTGCATGGTGG ATAAGGTGAGTCTGAGGTGTATCAGAGGAATGGTGCCGGGGATTTTCCCGATCAGTCAGACAGGTGAATATGTTTTTCTG GCTACTCATAGGCAGGTTTTGGTGTATCATCGCAACAGTAAAGTCTGGAAAGAAATGTACTCTGTTAAGTATAGTTCCTC ACTACCGCTCTGGTTTTCAGCACACGCATATCGCAGCACAATGTTCTCATGTAGCTGA
CDS sequence (LotjaGi6g1v0261700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAAACGAGGAGATGGGATTTTCCCGGATGAGGTGGTTATGCAGATTCTTGCAAGGTTGCCTGTGAAATCCCTTTT CAGGAGCAAAACCGTGTGCAAATTGTGGTGTAGATTGTCCTCAGATAAGTATTTTGTTCAACTCTACAATGAGGTATCTA GGAAGAATCCCATGATTCTTGTTGAGATTTCTGATACATCAGAGTCCAAATCTAGCTTAATCTGTGTTGATAGTTTAAGG GGTGTTTCTGAATTTTCACTCAGCTTTTTGAATGATAGAGTTAAGGTTCGTGCATCTTGTAATGGCTTGTTGTGTTGCTC TAGTATTCCTGATAAGGGTGTGTTCTATGTTTGCAACCCGGTCACTCGCGAGTTTAGGCTGCTTCCCAGGAGTAGGGAAA GGCATGTCACTCGGTTTTACCCCGATGGCGAAGCGACCTTGGTTGGATTGGCCTGTGATTCGACGTGCCAGAGGTTTAAT GTTGTTCTCGCGGGCTGCCACCGCACGTTTGGTCATAGGCCGGATGGAAGTTTCATATGTCTGGTGTTTGATTCGGAGCT GAACAAGTGGAGGAAGTTTGTTTCTTTTCAGGATGATCATTTTACTCACATGAATAAGAACCAAGTTGTTTTTGTGAATA ATGCTCTGCACTGGTTGACTGTTAGCTCTACTTATATACTTGTGCTTGATTTAAGCTGTGACAATTGGAGGAAGATGCCG TTACCGTATGACTTGGTTCGAGGAACGGGAAATAGGATTTATCTCTTGGACTTCAATGGCTGCCTTTCTATTATTCAAAT TTCAGAAGCGTGGATGAACATTTGGGTGCTGAAAGATTACTGGAATGATGAATGGTGCATGGTGGATAAGGTGAGTCTGA GGTGTATCAGAGGAATGGTGCCGGGGATTTTCCCGATCAGTCAGACAGGTGAATATGTTTTTCTGGCTACTCATAGGCAG GTTTTGGTGTATCATCGCAACAGTAAAGTCTGGAAAGAAATGTACTCTGTTAAGTATAGTTCCTCACTACCGCTCTGGTT TTCAGCACACGCATATCGCAGCACAATGTTCTCATGTAGCTGA
Protein sequence (LotjaGi6g1v0261700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKRGDGIFPDEVVMQILARLPVKSLFRSKTVCKLWCRLSSDKYFVQLYNEVSRKNPMILVEISDTSESKSSLICVDSLR GVSEFSLSFLNDRVKVRASCNGLLCCSSIPDKGVFYVCNPVTREFRLLPRSRERHVTRFYPDGEATLVGLACDSTCQRFN VVLAGCHRTFGHRPDGSFICLVFDSELNKWRKFVSFQDDHFTHMNKNQVVFVNNALHWLTVSSTYILVLDLSCDNWRKMP LPYDLVRGTGNRIYLLDFNGCLSIIQISEAWMNIWVLKDYWNDEWCMVDKVSLRCIRGMVPGIFPISQTGEYVFLATHRQ VLVYHRNSKVWKEMYSVKYSSSLPLWFSAHAYRSTMFSCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 334 | 329 | 5.6E-116 | – | |
| PANTHER | 6 | 334 | 329 | 5.6E-116 | – | |
| Gene3D | 9 | 45 | 37 | 8.9E-10 | – | |
| SMART | 9 | 49 | 41 | 1.1E-7 | ||
| ProSiteProfiles | 9 | 52 | 44 | 9.074 | ||
| SUPERFAMILY | 9 | 73 | 65 | 1.31E-12 | ||
| Pfam | 10 | 43 | 34 | 8.1E-7 | ||
| TIGRFAM | 99 | 324 | 226 | 5.9E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0261700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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