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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0262200 |
| Transcript ID | LotjaGi6g1v0262200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT5G49620.1 myb domain protein 78; Swiss-Prot: sp|Q9FGY3|MYB78_ARATH Transcription factor MYB78; TrEMBL-Plants: tr|A0A151QND2|A0A151QND2_CAJCA Myb-related protein 305 family; Found in the gene: LotjaGi6g1v0262200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:57490344..57492808) extracted from Lotus japonicus Gifu genome v1.2.
CCGTAACTATAATTATTATCCTCCAAACTCTCATTAACGTGTTTGTTAATCAAATCATTAACTTTCACTACTACTAACTT CATGTCATGACTTGGTTTCTCTCTCATCATCTCGTTTTCTTCTTTTCTTTTTTCTTCTTCTCCCCCATCCTTGAATATCA TCTATAAAAGGCCCCCACCCTTCTCTATCTTCTTTGTAATAAGCCAAAACCCTCTTTCTCTCTCTCTCAAATCCGCTTAC TTCTTCGATCAACCAATATCAAACGTAACACAGCTAGCTACCTCATCTTTTCTCTCTTTGGCTTCTAATCAATCATATTT CAAGATATATATCCAAAAGTAAGATATATATAACTCATGGAAGTGAAAGGAAGGGTAAGCAACTCCATCTTCAACAACAA CAACACACTCATCCAAAGTGAAGATGAGATGGATCTTCGAAGAGGTCCTTGGACCGTTGATGAAGACCTTGCTCTCATCA ATTACATTGCCAATAACGGTGAAGGTCGCTGGAACTCCCTTGCTCGTTCTGCTGGTAAGTTATTTAGTTTTCTTTCATGG TTTGATTGAATAATCAAAACCAAATACAACACTATTCATGATTGCAATTTTTGACTAGAAAACACTTCTATTATTTTCAT CAAACACTTCCTTTCTGGCTAGCTTATACGTCTCTATAATTGTGGGTGAAAGCCCCATCCATCACTTCTCATATGGACCA TTTCATCTGCACCAATCAATCTTTTTCAATAGAAAGCCAAAGTTTGCGGTTTTCTTATGAAGAGCATCATGGTATTTTAG TGGATCATGTTGATGTTAGCCATGACTTTAATGGCATGTACTTAATTGTGTGTGGTGGTGGGACATTATGAAATGAAATA TATAATCATAGGTTGCCATCGGTAATTGCTTGTTTGTGAATATGGACAAAGAATAATATATTGATACCACAACTCTATCA TTTAAGTTTAAAGTAAAAAAGGAAATGCTCTTTCTTCTTTACTAAATTTGATCGCACTAAAACTTTACCAATTGAAACAA TTTCTTTTGTTATTACAGGACTCAAACGAACCGGCAAAAGTTGTAGGTTGAGGTGGTTGAATTATCTCCGCCCTGATGTT CGACGAGGTAACATCACACTCGAGGAGCAACTTCTTATTCTCGAGCTCCATAGTCGCTGGGGAAACCGGTAAGCATAAAA TAATCGGTTTTTTTTCTCAACACATAAGAAGAGTTTTATTCATGTTTAACCCGGGTGATTAAAACTCTTGTTACGTATAG TTGCACGCATTTTTCTCAATTAAAATTTAACTGTTATTTAATTTATTGATATTGATCAGATGGTCTAAAATTGCACAATA TCTACCCGGAAGAACCGACAATGAAATTAAGAACTATTGGAGAACTCGTGTCCAAAAGCATGCCAAACAACTCAAATGTG ACGTGAACAGCAAGCAATTCAAGGATGCCATGCGCTACCTATGGATGCCAAGGCTGGTGGAGCGCATTCAAGCTGCTGCC GCCTCCACTGCAACGGCCACAACCGCTTCTCCAGCCTTTTCTGCCGGTGCCAACACAACGGTCACAGCCAACAACAACAC CACATACAACAATTTTGAGGTTCATAGTGGGAACATGATGTTAGCTCCCACAATTATGAGCAACAACAACAACTTTGGTG GCTCACACGTGACACAAAGTTACACTACTCCAGAGAATAGCAGCAATGGAACGGCATCATCAGACTCGTTTGGGACACAA GTTTCACCTGTCTCGGACTTGACTCATCAGGATTATTACAATAATGTCCCTGTTGGTAGTAATAATAATGTCCCTAACCC TGATTATTACTACCAACAAGCTCATCAACTGGGGTTTTCAGACTGCATCACTAGCCCCTCCGGGATGTTCCCTACTCAGG AGATGGAGATGGATTACTTCAATTCCATGGATCCAAACACGCCGTGGATTCAAAGCGGGGACACAACCGACAATTTCTGG AATGTTGATAACATGTTGCTCTTTCAACAGCTTAACATGTGAAAAAGGCTAGTGTGAAAATACTACAGATATGTTAGAAA AATGAACAAATAGAATAAATCCATATGTAGGACACACATTAATTTAGTATCCACGATGGACATAGATTTTATACCAAAGA TTATATAATTAAGATCAGCAAAGAGCAGGAAAATGTGAATTGCCTAGGGTTTTTCTTTCTTCTCGGTGTTTTTCTTGTTT TAGAAGGGGTGTGATGTGAGAGATGTTTGTAATTTAAGCTGTTTTTTACTTTTTTAGTACAAGATTTCATTCTTTGAAAT TACTAAACTCTATTCCCTTCTATTTTATTTTGATTCTGATTATAATTCCCTAGCTAGATAGGGATAATAGTAGGAGTGCA TTAATTTATCTATCGATGCATGATTGTAGATATTAAATTAATAAATAATACTGTAATTAATGGTG
CDS sequence (LotjaGi6g1v0262200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGTGAAAGGAAGGGTAAGCAACTCCATCTTCAACAACAACAACACACTCATCCAAAGTGAAGATGAGATGGATCT TCGAAGAGGTCCTTGGACCGTTGATGAAGACCTTGCTCTCATCAATTACATTGCCAATAACGGTGAAGGTCGCTGGAACT CCCTTGCTCGTTCTGCTGGACTCAAACGAACCGGCAAAAGTTGTAGGTTGAGGTGGTTGAATTATCTCCGCCCTGATGTT CGACGAGGTAACATCACACTCGAGGAGCAACTTCTTATTCTCGAGCTCCATAGTCGCTGGGGAAACCGATGGTCTAAAAT TGCACAATATCTACCCGGAAGAACCGACAATGAAATTAAGAACTATTGGAGAACTCGTGTCCAAAAGCATGCCAAACAAC TCAAATGTGACGTGAACAGCAAGCAATTCAAGGATGCCATGCGCTACCTATGGATGCCAAGGCTGGTGGAGCGCATTCAA GCTGCTGCCGCCTCCACTGCAACGGCCACAACCGCTTCTCCAGCCTTTTCTGCCGGTGCCAACACAACGGTCACAGCCAA CAACAACACCACATACAACAATTTTGAGGTTCATAGTGGGAACATGATGTTAGCTCCCACAATTATGAGCAACAACAACA ACTTTGGTGGCTCACACGTGACACAAAGTTACACTACTCCAGAGAATAGCAGCAATGGAACGGCATCATCAGACTCGTTT GGGACACAAGTTTCACCTGTCTCGGACTTGACTCATCAGGATTATTACAATAATGTCCCTGTTGGTAGTAATAATAATGT CCCTAACCCTGATTATTACTACCAACAAGCTCATCAACTGGGGTTTTCAGACTGCATCACTAGCCCCTCCGGGATGTTCC CTACTCAGGAGATGGAGATGGATTACTTCAATTCCATGGATCCAAACACGCCGTGGATTCAAAGCGGGGACACAACCGAC AATTTCTGGAATGTTGATAACATGTTGCTCTTTCAACAGCTTAACATGTGA
Protein sequence (LotjaGi6g1v0262200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVKGRVSNSIFNNNNTLIQSEDEMDLRRGPWTVDEDLALINYIANNGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDV RRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQ AAAASTATATTASPAFSAGANTTVTANNNTTYNNFEVHSGNMMLAPTIMSNNNNFGGSHVTQSYTTPENSSNGTASSDSF GTQVSPVSDLTHQDYYNNVPVGSNNNVPNPDYYYQQAHQLGFSDCITSPSGMFPTQEMEMDYFNSMDPNTPWIQSGDTTD NFWNVDNMLLFQQLNM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 333 | 316 | 3.0E-120 | – | |
| PANTHER | 18 | 333 | 316 | 3.0E-120 | – | |
| ProSiteProfiles | 24 | 80 | 57 | 22.968 | ||
| Gene3D | 26 | 82 | 57 | 4.4E-17 | – | |
| SUPERFAMILY | 26 | 123 | 98 | 4.12E-30 | ||
| SMART | 28 | 78 | 51 | 1.7E-13 | ||
| Pfam | 29 | 76 | 48 | 6.3E-14 | ||
| CDD | 31 | 76 | 46 | 4.3271E-11 | ||
| ProSiteProfiles | 81 | 131 | 51 | 18.378 | ||
| SMART | 81 | 129 | 49 | 2.9E-14 | ||
| Pfam | 82 | 125 | 44 | 2.4E-14 | ||
| Gene3D | 84 | 149 | 66 | 9.4E-17 | – | |
| CDD | 102 | 125 | 24 | 8.077E-8 | ||
| MobiDBLite | 219 | 244 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0262200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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