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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0275200 |
| Transcript ID | LotjaGi6g1v0275200.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine desulfurase family protein; TAIR: AT1G08490.1 chloroplastic NIFS-like cysteine desulfurase; Swiss-Prot: sp|Q93WX6|CNIF1_ARATH Cysteine desulfurase 1, chloroplastic; TrEMBL-Plants: tr|A0A151REY6|A0A151REY6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0275200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59197312..59200917) extracted from Lotus japonicus Gifu genome v1.2.
ACCGAGGTATTGGAATCAACAATGGAAGTTTTGCTGCCAAAACTTCCATCCTTCAACTTCTCAATCACTGCTAGAAGCTC ATCATGTGTTAGGCTTAGGTTCCGCCGCGCATCGTCTCTCTCCGTTTGCGCTTCGACTGTCAATGAAGCAGTAGCTGAAC CAAGTATTGGCTCCCCTTCTCTTGGTCACTCCACCAGACCCCATTTCCCAATACTTCACCAGGTATCTATGTATAACAAG CCTTAATTCAATTGTCTCATTCTTAACTAGCCTATCTACAATGGTGTTGCCGAATATCGGCTTTTATTAATATACATATG GTTTTTCGTTCCTCGATTTTGTTTATGCATATACTGCGCGAAATGTGGTTTTGATGTTCTTCTCCATGGAAGAATGGTAT TTCTTATGTTGTTCTGGCACATATTGTAAATTTATGATACTTTGATTCACTCCACAGGAAGTAAATGGCTCAAAGCTTGT TTACTTAGACAATGCAGCAACTTCTCAGAAGCCCGCCGTTGTTTTGAAGGCATTGCAAAACTATTATGAAGCTTATAATT CGAATGTACACCGGGGCATACATTACCTGAGGTATTTAGTGTGTAATATTTGGAATTACATATGTAATTTTGAGACACTT TAATGTGTTTGTCTTGTCTATCTGTGATTGCATAGATTGGTTAATGCTTTTTCTTGCGTAATTTTTATGGATGTAGTGCA AAGGCCACAGATGAGTTTGAATCAGCTAGAAGGAAGGTTGCAGCTTTTGTAAATGCTTCTGATTCCAAAGAAATTGTGTT CACAAAAAATGCTACGGAAGCTATCAATCTTGTGGCTTATTCTTGGGGCCTGTCAAATTTAAAACCAGGAGATGAGGTAT TTTATTTTAGGTTAATATTTTAATGAATCTCAAAAATAATTTTTAAGAGTTGAGGAGAGTATTAGGGTCTAATTTGAACT TACCAATAGTGGTGAATTTTTTTAATCACTAAAAATCTATTCATTAACATTTGGCATATGTGTTGCCATCATATTCTTGG CATGCCCTGTAAAATCTTCAGTTTTATTATTGCAGATCATACTTACAGTTGCTGAACATCACAGTGCGATTGTTCCGTGG CAACTAGTAGCTCAAAAAGTTGGGGCTGTTTTGAAATTTGTGGATTTAAACCAAGATGAAATTCCAGATATTGAGAAATT GAAAGAAATGCTCTCGAAGAAGACCAAAATAGTTGTTGTTCATCATGTTTCAAACGTGCTTGGTATGTTTCTCATCATAA TTCTTCACATTGAAAATTCTATTTTCTGAATGATACATTGAATTTATGCTCTCAAAATTGATGCACTTCCTGGATTTATT TCGTAGTTTTTTACATTAATGATCTTTTTTATTAGGAACTTCAAACCATCCCTTATATCACAAAAGGGTGATTAGGTTTC AAATCCCAATACTAGATTGTTGAGTGTTTGTCCACCTTGAAGTTAAACTGATCTTCAGGCTGAGCTTATGCTAAATTTTC TAATATTTGATAAGCATTTAAGTGTATGTCCATCTTCACCCCACTGGGACTGATGAGGGACTCCTACTTGTATAAGCATT GCACCTAGGTTCGGTCAAACTTGTACGAACATAGAATCTTTCTGAATAAATTTGTGAAATGATAATTAGTTTATAGAAAA CATTACATCCTTGATGCTTGTAAAGAGACTTTCGGACACTCATCTATCAGGGTATATCATATAAAAATATAAAATTTATA TGCTATTTCAAATTTGTAACATATTTTCCACAATCAGAGTACTTGTTACACACTTTTAGAATTTTTAGCTGAAATGGAGA AGTTTTCATATATTTGTACTTTGCTTTTCTGTAGCTTCTGTCCTCCCTATTAGAGATATTGCACATTGGGCACATGATGT TGGGGCAAAAGTGCTTGTAGATGCCTGTCAGAGTGTTCCACACATGGTGGTTGACGTTCAGAGCCTTAATGTTGATTTTC TTGTTGCTTCTTCTCACAAGGTAGTTTTTATTACATATTTTTGTGATGTAACTCTTCCAAACTCGTGGAGTAAATTATCA AACATGTGTTTCAGATGTGCGGGCCAACGGGCATTGGGTTCTTATATGGTAAAATAGACATCTTGTCTTCCATGCCTCCA TTCTTAGGTAAGTTATTAGCCATTGTACTTAAATCTCCCCATAAAACATGAACAGCTAATTAAAATGCTACAAAATAAAA TTGTTTACGGTCTGTTTTGGCACCATGTTAATAAGATTGTCTTTTGAAGCTAAAGTATTTTGATGGCAACCTCTGCCTTG TTTTAGGTGGTGGTGAAATGATTTCTGATGTATATCTTGATCATTCAACTTATGCCGAACCTCCATCCAGGTCTGTGAAC TGGTTTTTCCATCAACTCAGGCTAGCATATTGTTAGGGTTTAAATTGTCCTAATAGTAACCGCAAGTAAAAAGGGGTCAA AAGGGATAATTTTTTTTATATTTTTGTGCCTATAAAACTGGAAAACAATTGGAGGGAAAGATATTAAAAGAGCGATACGA ACCAGAATCCTTATGGATTAACAAGAAGGAGGACCTTCTTCCTAGGGAGAATCCCTTTGAAAAATATAATACTAAAGTCA CACCCTTACATAAGGAGAGTACTCCTATTTATAATAGCTAACCCTACTAAAGAAATAAATATAGACTTAACCACTAAACA TAGTGACAAATTTTCTTAACTGTTGTTGCTTATACAATCAGTTACTTGTATCTTACTAAATGAGGCATTTTGACTGTTCT AGGTTTGAGGCTGGAACACCAGCTATTGGCGAAGCAATTGGTTTAGGAGCAGCAATTGATTACTTATCTGGGATTGGCAT GCAAACCATACATGATTATGAGGTGAGTTGAACTTCAACTTCATAACAAATACTGCTAAAATTCAGACTAAAAGTGATGC ATGAATTTGGAATATAACTTATATGTACATGTTGGTGTAAAACTTCTTGTACGCTGTCATCCAGTCTTGTGTTGAATTTG GTCAATAAAACGTTGTCATTTTTTTACTTGCATTGAGATAAATTATATGTATATTTTGTATCAATAGGTGGAGCTGGGCA CGTATCTGTATGAAAGGCTTCTTTCAGTCCCAAATATTCACATCTACGGGCCAGAGCCCTCAGAAAAAGTTGAACGAGCT GCCCTCTGTTCTTTCAATGTTGAGAATTTGCACCCCACTGATCTTGCAACATTTCTTGACCAACAGGTAAGAGATTAAGG ACTATCCCCAGATATGTTCATTTGCTTTGTCTCGAGACAGTTTAGTTTATACAATACACTGTCAACGCCTGAATTTAATG AAAAAAAATTAGTATAACTGATCATGTTTGAAAATTTTCTTTTCTTGAATTGCAATTAACAATGTTCCATTTCAGCATGG AGTGGCTATCAGATCAGGTCACCATTGTGCCCAGCCCCTCCATCGCTATATAGGAGTCAATGCAAGTGCACGTGCTAGCC TCTATTTCTATAACACTAAGGAGGATGTTGACAACTTTATCCAGGCCCTCCATGACACAGTGAGCTTCTTCAATTCATTC AAGTAG
CDS sequence (LotjaGi6g1v0275200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGTTTTGCTGCCAAAACTTCCATCCTTCAACTTCTCAATCACTGCTAGAAGCTCATCATGTGTTAGGCTTAGGTT CCGCCGCGCATCGTCTCTCTCCGTTTGCGCTTCGACTGTCAATGAAGCAGTAGCTGAACCAAGTATTGGCTCCCCTTCTC TTGGTCACTCCACCAGACCCCATTTCCCAATACTTCACCAGGAAGTAAATGGCTCAAAGCTTGTTTACTTAGACAATGCA GCAACTTCTCAGAAGCCCGCCGTTGTTTTGAAGGCATTGCAAAACTATTATGAAGCTTATAATTCGAATGTACACCGGGG CATACATTACCTGAGTGCAAAGATCATACTTACAGTTGCTGAACATCACAGTGCGATTGTTCCGTGGCAACTAGTAGCTC AAAAAGTTGGGGCTGTTTTGAAATTTGTGGATTTAAACCAAGATGAAATTCCAGATATTGAGAAATTGAAAGAAATGCTC TCGAAGAAGACCAAAATAGTTGTTGTTCATCATGTTTCAAACGTGCTTGCTTCTGTCCTCCCTATTAGAGATATTGCACA TTGGGCACATGATGTTGGGGCAAAAGTGCTTGTAGATGCCTGTCAGAGTGTTCCACACATGGTGGTTGACGTTCAGAGCC TTAATGTTGATTTTCTTGTTGCTTCTTCTCACAAGATGTGCGGGCCAACGGGCATTGGGTTCTTATATGGTAAAATAGAC ATCTTGTCTTCCATGCCTCCATTCTTAGGTGGTGGTGAAATGATTTCTGATGTATATCTTGATCATTCAACTTATGCCGA ACCTCCATCCAGGTTTGAGGCTGGAACACCAGCTATTGGCGAAGCAATTGGTTTAGGAGCAGCAATTGATTACTTATCTG GGATTGGCATGCAAACCATACATGATTATGAGGTGGAGCTGGGCACGTATCTGTATGAAAGGCTTCTTTCAGTCCCAAAT ATTCACATCTACGGGCCAGAGCCCTCAGAAAAAGTTGAACGAGCTGCCCTCTGTTCTTTCAATGTTGAGAATTTGCACCC CACTGATCTTGCAACATTTCTTGACCAACAGCATGGAGTGGCTATCAGATCAGGTCACCATTGTGCCCAGCCCCTCCATC GCTATATAGGAGTCAATGCAAGTGCACGTGCTAGCCTCTATTTCTATAACACTAAGGAGGATGTTGACAACTTTATCCAG GCCCTCCATGACACAGTGAGCTTCTTCAATTCATTCAAGTAG
Protein sequence (LotjaGi6g1v0275200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVLLPKLPSFNFSITARSSSCVRLRFRRASSLSVCASTVNEAVAEPSIGSPSLGHSTRPHFPILHQEVNGSKLVYLDNA ATSQKPAVVLKALQNYYEAYNSNVHRGIHYLSAKIILTVAEHHSAIVPWQLVAQKVGAVLKFVDLNQDEIPDIEKLKEML SKKTKIVVVHHVSNVLASVLPIRDIAHWAHDVGAKVLVDACQSVPHMVVDVQSLNVDFLVASSHKMCGPTGIGFLYGKID ILSSMPPFLGGGEMISDVYLDHSTYAEPPSRFEAGTPAIGEAIGLGAAIDYLSGIGMQTIHDYEVELGTYLYERLLSVPN IHIYGPEPSEKVERAALCSFNVENLHPTDLATFLDQQHGVAIRSGHHCAQPLHRYIGVNASARASLYFYNTKEDVDNFIQ ALHDTVSFFNSFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 114 | 104 | 4.0E-195 | – | |
| PANTHER | 11 | 114 | 104 | 4.0E-195 | – | |
| SUPERFAMILY | 58 | 405 | 348 | 4.92E-97 | ||
| Gene3D | 59 | 79 | 21 | 3.0E-20 | ||
| CDD | 75 | 402 | 328 | 1.73274E-175 | – | |
| Gene3D | 86 | 114 | 29 | 3.0E-20 | ||
| Pfam | 114 | 398 | 285 | 5.8E-103 | ||
| Gene3D | 115 | 295 | 181 | 3.1E-124 | ||
| PANTHER | 115 | 412 | 298 | 4.0E-195 | – | |
| PANTHER | 115 | 412 | 298 | 4.0E-195 | – | |
| ProSitePatterns | 216 | 235 | 20 | - | ||
| Gene3D | 296 | 402 | 107 | 3.1E-124 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi6g1v0275200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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