Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0278200 |
| Transcript ID | LotjaGi6g1v0278200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sodium/hydrogen exchanger; TAIR: AT1G79610.1 Na+/H+ antiporter 6; Swiss-Prot: sp|Q8RWU6|NHX6_ARATH Sodium/hydrogen exchanger 6; TrEMBL-Plants: tr|I1MFX0|I1MFX0_SOYBN Sodium/hydrogen exchanger; Found in the gene: LotjaGi6g1v0278200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59499312..59505731) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGCTCGGAGAATGAAATTTCTCCGGCCGATGGTCACAAGGCTCCCGGCAAGGAGCAGCAAGCCGCCGGCGTCGGAAT CCTTCTTCAGATCATGATGTTGGTCTTGTCCTTCGTTCTCGGTCACGTTCTCCGTCGCAAGAAGATTTACATCATCCCTG AAGCCAGTGCTTCTCTTCTCATAGGTAATTTTCTCTTCTTCTTCTTGTTCTTCCATTCACTTTCTAACCCTAAATTGAAT TTTACCCCCTTTTTTTGCAGGGTTAATTGTTGGAATACTAGCTAACATTTCTGACACTGAAACTAACATCAGGTTATTCT CAATTTCAATTTCAATCTATCACATCATTCTCAGTTTCTCTTTTACTTTTTCAGTGATTCAAGTTCTTGTTTGTCAATTT TCTGCAGGGCTTGGTTCAATTTTCATGAGGAGTTTTTCTTCTTGTTCTTGTTACCTCCCATCATATTATATCCTTACTAA CATTGTTAGTTCTTATGTATAATGCTTTATCTGCTCACTGCATCATATGTGTTGTGTTTGTTTCCTTGACTCTTGAGTTT ACTCAGTCTGGCTTCAGTCTCTCACCTGTAAGTCATTTCATAGTGTTCTCTTTGTTGGACTTGAACTTTGTTTTTTTGGG AAAGGGCTTTGGACTTATCAGGGACTGGTAATGTGGCTTTTTACAGAAACCATTTTTCTCAAATTTTGGAGCAATTGTGA CATTTGCGATATTCGGCACCTTATTAGCTTCCGTTGTAACCGGTGTCTTGGTGTAAGTTCTATTCCCCTCATCCCTCCCC CTTTTAAAATAGTAACTTTTACACTTATTGGTGATGCACATAAGTTACATAACACATTAGGGTGGTGGTTAATTAGAGTT TTTTCAGTTCATTGATTATGGTTATCCTCTATGATTCAGTTATCTTGGTGGGCTGGTGTTCCTCATGTATAGACTACCTT TTGTTGAGTGCCTGATGTTTGGTGCTCTTATATCAGCAACCGACCCCGTTACTGTTTTGTCCATATTTCAGGTGATTTGT GCCTTTTTAATAATAATTTCATTTATAGTTTATACATTTACTCGGTTAGATACTTGTTATGACTTCCAATATTATCATCT ATATTGCTGCGAATCGAATATGTTTGTCTAATACAAAGGCCATGGGGTGTCAATGAATAGTCAGGACTCATTAGCATTCC TCTCCACCTGCTAGTTTGTTGCATGTGCTCATGCTTCAGCTACTACATTTTTTGCATAATTGAAGCTTTGTAGTAGATGA TCATAACTTATTATGACGTAAATAAATGGCAAAGAGATTAATGCAGAACTTAGTTGTGTTTAAAAATAGATTTAATAGGA AAAGCGTTATAAAACTTCGATTGGGAAATTCCAAGCCTTTGAAATCTATAATGGGATATGTCCTTAGCTCATCATCTATT AAGCAGGGACATAGACATAGATAGTTACTAGACATGACACTGACACACCAACACCGACAATGTCTAAAATGTGGATTTCG TTTCTCTAAAGCGAGGGAGTCATTATATAGGGTAAAGTAGGAAGTCATTAACCATATTTCTTAGTATATGTGGGGTAGTT ATTTGGTTCTTATAATAAGGACCAGAAGGAGAATCTGGAATTGCTAACTTGGAATTTAGTTATTGCTAACTTGGAGTTTT AATTGCCAGGAGCTGGGCACAGATGTCAATCTATATGCCTTGGTTTTTGGAGAATCTGTTTTGAACGATGCAGTAAGTTT CTTTTGGTACTTGCTACAGCCCTTTTTTAATACTTGACTGCAGATTTGGTTTAAATATAGTTGATTTTAATTTGCTAATC TTTTGCTTGATTGGGCCCCTTGTTATTTCTTTTGTCCTATCCTCCCTCCTTCACTATGGGCAGATGGCAATTTCTTTGTA CAGGTACCTGAACTTCCGAAGTATCTTTTGCTTCTCTGAACTGAAGTAGCCCAAGTTTTATTAAAGTTCACTTCTAACTC AAGCACTTACTTTGCAGGACAATGTCATTGGTTAAAACTCATCCATCTGGACAAAATATATTCATGGTGATTGTTCGATT TTTGGAGACTTTTGTTGGGTCAATGTCAGCAGGTCAGTCTTTTACTCAATGTTCTGTTTAGGAAGTGTTAGGAGGGAGCC TCTTTAGAGATTTTTTATTTTTTTATTATATAAACTTAGGGTCTTAGATGCTTTTCTGTATTGTTGTGAGTTATTATGTT TTCAGTATTACTAAGTTGTGAGCTGTGGTTCTTTTGATGGATCTGCAGGTGTTGGAGTTGGGTTTATATCTTCTTTGATA TCCTTTTAAACCCTCATGTCCTGTATATTTGCAGCATAAATATTTGGAAATTTTAAAATCAAGATTTATTGTAAAACCTT GACTATCAGAACCTATTTAAGTATGCAGGGTTGGATATTGACAGGTAAACATTTAATATTAGTTTTCTTTCTGATATTTG TCATTCGATGATTCACATTACATCTAGAAAATACTAATCAGAAGAATTTTATGCTTCTATCCAGCCTTCAGAACTTGGAG AGCTGTCTTTTTGTTCTTTTCCCATATTTCTCGTAAGAAACCTTCCTGACCATTTCTTGATAACTTGTCCACAAAATTTT TACAAGTTTTTCCATTTATGGTGCAAATCAGCGTAAAACTATTTTCTTTTTCAGGTATATGCTTGCTGAAGGCCTTGGTC TGTCTGGAATCGTATCAATACTATTCACAGGAATAGTAAGTTCATATTGCATTTTCCCTGTGTTATTTCATGTCTGTATC ATAACATGGTTATGAGTATTTTGATGTTTTGTTTTAGGTCATGAAGCATTATGCATATTCAAATTTGTCACAAAGTTCTC AAAGATTTGTCTCTGCTTTTTTTGAGTTGATATCATCACTAGCCGAAACATTTGTGTAAGGCGGATTTCATTGACAGTAT TTTCCCTCTTCTGCTTAAACATTTCCTCTAAATGATGAGTTAACACTTTTTTGTTGTGTTCTACAGATTTATATACATGG GATTTGATATAGCTATGGAGCAACATAGCTGGTCTCATATTGGATTCATATTCTTCTCCATTGTATCCTTTTTTCTTTCC TTTCTTTTTGGCCCTGAAAATTGAAATGTTGCGATTTGTATTAGCTTTAGCTCAACATATCATGTTCTTATGGGATTTTT CCTCAACCCGTGTGATAATTACTTCAGATATTCATTGGAATTGCAAGGTATTTTCACTGATTGCTATCATTATAAGTCCT TGATTATAGGGGCACATGATAATTTCAGGCTTTTTGGATATTCTATGCTTTGATTTCACATGTCGCTTGAAAATCTTAAA CTAGATTGTTGGGTCATTTCATGCAGAGCGGCAAATGTCTTCTCTTGTGCTTATCTGGTTAATCTGGCAAGACCAGCTCA TCGAAAGATACCTGTAAAACACCAGAAAGCACTTTGGTACAGTGGTAAGGAATTAACCAGCACATATATCATTGACTTTT CGGTGCAAATTTGGATTACTTCTGTCAAGGAAACAAACTGCTTTAAGCAATTGGTGCATTCTTTAATGCGGTGCCTGAGT TTTTCATTTTGTGAACATGAACAGGACTTCGGGGAGCCATGGCCTTTGCCCTCGCTTTGCAATCAGTTCACGATCTTCCG GAAGGACATGGACAGACCATCTTCACTGCAACTACAGCAATAGTTGTTTTGACGGTAGGCACACTCTTGTTGTCCTTTAG TTAAGCTAATCTTCTAAATACTAAGGTAGTGTTAGGTACTGGGCTGTGTTGGACATTGTGTAACCTGTAAATGTTACTTC CGTTCACCATGTGCCAACAGGAGCAAAGATCAAGTGTAGGGGAGATGTGAATGTTGAGGTAGATGAGTGAGTACACAAGA AAATATAAGATCATGAACAGATGTATTCAGGAGAAAGTTGGAGCAAGAAATCATTACTGTATTTCAATAAGAGAGGAAAA CATTTGCACAGATAAAAGATAAAGAGGACACAGTAGAAAACTTACAATCCAAATACAGCGTGAGGTGCAGAGAAAATTGA GGGTTGTATTACAAAAGAGATTGCAAAAAAATTAAATCATAAAATGGAGACAATAGAAAAGTTAAGTCGAGATCTGAATA AAGATATCTTTAAATTCATATATCCTTTCAACCTCTTTCGGAGAACCTTACAAAAAAGTGCCAGATCTTTGAATCCAATT TTATGCGATCACCACATAAGATCATGAGCTACGGGTCTTCTGGTATCATATGATACAAATGCCATTCAGGAATCTCAGAC GACTCAGAGAAAATTGGTTTTGTAAATGGTGACCAAATTATAAATGGAGGAAGTTGTGGTAAAGTAATATGTGGTAAGAG AATATATAAGTAACATTTATTGAGTAATCTGATGGTAAGCATCCAAAGAACTGACTGAAAGTTTTGTCAAATTTATATAG TTTTCTTATGTAGGTTATTCGCATGCAGCCAACTTTTTCTCCCATTTTTTGTTTAGTCACCATTCCTGAGCTCCATTTCC AGTATGAAACCTTTTGTTTGTTGTTTCAGGTATTACTGATTGGTGGTTCAACAGGAACCATGCTTGAAGCTCTAGATGTT GTAGGTGGAGACAGTCCAAACGATAGCCCTTTGGCTTCAATTGGTTCCGTCCCAGCAAGTTTTGCAACAAATAATGTAGG TTAAGCTTTATAACGATAACGCGTTAAACACCCTTCGTTTATGTTATATGACTTTTAACTTTAAACTTTCATTTGGAAGC AACACCCATCATTAATATTAGAAGATGAATGGCCAAATACTAATATGATCTGGGCTTATAAGTTTTCACTTTCACAAGCT TATTGCAAGATTATGCATCTCATTTTCATACATCTCATTTATCTTTTTAAAGTGATCTTGATATGTGGTGTCATTGTTGA ATGCTTGAAAGAGAAGTAAATGACTGACTGACTGTAACGAACATGTGTTGTCTTATATTGATAGAAAAGATAAAAAGAAA GACTTATATCGCATAATGCTCACATGAAACATTGTTTGCAAGGTTGTTTAATTTATTGTAGCATTATATGCATGTTTTTC TTGTTATAACTTGGACTCATCTATAGTAGCTTGGCTGTATAATTTAATTGTAACGGCTGTCCTCTTGCACATTTCATTTT GTTTTGTCAATTAAGTGTTAGCTCTTAACATGAAAGACTAGGCTCTTTTGCTTTCTCAAATAATAGAAGCTTGCAGGAAG GAAGTTATGCTTTACAAGTTATGGTTGACTAAGATTTGGGTGGGACTAGTTTGTGTGTGTATATATATATATATTTGATG TAGAAAGAAGTGGTTATGTTATCTCAAAAAGTCATAGCCTAAGAAGTAGAGGTTGATGATTGCCCTGGCTAAAATAAAAT TCTAGGTACCAAACATGCCCAACTGAGAATTAAGTGTTTGATATAGTTATCTCATGATTTGAATTTTAAGAATCCATATT GTTATAAATTTTGTTGTCAAATTTTTGGTTCGCTTCCAAATTGAAAGTCTCAATCTTGACAGTTCAAATGATCCTGACAG TGGATAATATATAACTAGATGAATCTACTTCACATGTTTGTCTGTTTCTCTTTCAACTGACATCTTTTTGTTTTACTCAA GGTTTATGAGGGGAACATTGGTTATGTTGCTCCTTCATACGATGAAGAATCATCTTCATCTGGGAACAAAATCAAGATGA AGCTAAAAGAATTCCACAAGAGGTATTATCTGTGTTCTGAGTGTGTTATATGTACTTGTGAATGTATGTAACTGAGTATG TATGAAGGAGAAGATGCTTAATACGAAATTGTATCTGTCTAAACCACTTCCACCGCTTCTCCTTTTCATTTTTATAGTTG CAAACCACTTTGTGTAGATTCATGCAAACTGTTTTTGTAAATATAGGATAACTCATGTATGTATGTATGTATGTATGCAT GTATGTATGTATGTATATCTGTCAATGTGCGCCCGCACAAGTAGACAGTGCTTGGCACAGTTAGAACAGAAAGAAATATA CTACACCCTTTTGTTCTTTTTTATTATACTTTTTTAGTAGAACCAAATTATCTCAATTTTTTAAGCCTTGTGTTTTATTC TGTTCTACTTTTAAAATGTAACAAACAGACTAAAACAAATATGTTCATCCCATTCTACTTTTTTGCCCTAAAATGCTACC TTAATGATGTCGCCATTGCTAATTTCTCTTTGCTTCTTTTTTGCAGTGCTGGGTCTTTTACAGCATTAGATAGAAACTAC CTTACCCCATTCTTTACTAGTCAAAATGGAGATGAAGGTAAATTTGACTGTAATTTTTATTCAGAACTCTGTCATTTATG CTGAAGAATTTATGTAGTAG
CDS sequence (LotjaGi6g1v0278200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCTCGGAGAATGAAATTTCTCCGGCCGATGGTCACAAGGCTCCCGGCAAGGAGCAGCAAGCCGCCGGCGTCGGAAT CCTTCTTCAGATCATGATGTTGGTCTTGTCCTTCGTTCTCGGTCACGTTCTCCGTCGCAAGAAGATTTACATCATCCCTG AAGCCAGTGCTTCTCTTCTCATAGGGTTAATTGTTGGAATACTAGCTAACATTTCTGACACTGAAACTAACATCAGGGCT TGGTTCAATTTTCATGAGGAGTTTTTCTTCTTGTTCTTGTTACCTCCCATCATATTTCAGTCTGGCTTCAGTCTCTCACC TAAACCATTTTTCTCAAATTTTGGAGCAATTGTGACATTTGCGATATTCGGCACCTTATTAGCTTCCGTTGTAACCGGTG TCTTGGTTTATCTTGGTGGGCTGGTGTTCCTCATGTATAGACTACCTTTTGTTGAGTGCCTGATGTTTGGTGCTCTTATA TCAGCAACCGACCCCGTTACTGTTTTGTCCATATTTCAGGAGCTGGGCACAGATGTCAATCTATATGCCTTGGTTTTTGG AGAATCTGTTTTGAACGATGCAATGGCAATTTCTTTGTACAGGACAATGTCATTGGTTAAAACTCATCCATCTGGACAAA ATATATTCATGGTGATTGTTCGATTTTTGGAGACTTTTGTTGGGTCAATGTCAGCAGGTGTTGGAGTTGGGTTTATATCT TCTTTGCTATTTAAGTATGCAGGGTTGGATATTGACAGCCTTCAGAACTTGGAGAGCTGTCTTTTTGTTCTTTTCCCATA TTTCTCGTATATGCTTGCTGAAGGCCTTGGTCTGTCTGGAATCGTATCAATACTATTCACAGGAATAGTCATGAAGCATT ATGCATATTCAAATTTGTCACAAAGTTCTCAAAGATTTGTCTCTGCTTTTTTTGAGTTGATATCATCACTAGCCGAAACA TTTGTATTTATATACATGGGATTTGATATAGCTATGGAGCAACATAGCTGGTCTCATATTGGATTCATATTCTTCTCCAT TATATTCATTGGAATTGCAAGAGCGGCAAATGTCTTCTCTTGTGCTTATCTGGTTAATCTGGCAAGACCAGCTCATCGAA AGATACCTGTAAAACACCAGAAAGCACTTTGGTACAGTGGACTTCGGGGAGCCATGGCCTTTGCCCTCGCTTTGCAATCA GTTCACGATCTTCCGGAAGGACATGGACAGACCATCTTCACTGCAACTACAGCAATAGTTGTTTTGACGGTATTACTGAT TGGTGGTTCAACAGGAACCATGCTTGAAGCTCTAGATGTTGTAGGTGGAGACAGTCCAAACGATAGCCCTTTGGCTTCAA TTGGTTCCGTCCCAGTTTATGAGGGGAACATTGGTTATGTTGCTCCTTCATACGATGAAGAATCATCTTCATCTGGGAAC AAAATCAAGATGAAGCTAAAAGAATTCCACAAGAGTGCTGGGTCTTTTACAGCATTAGATAGAAACTACCTTACCCCATT CTTTACTAGTCAAAATGGAGATGAAGGTAAATTTGACTGTAATTTTTATTCAGAACTCTGTCATTTATGCTGA
Protein sequence (LotjaGi6g1v0278200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSENEISPADGHKAPGKEQQAAGVGILLQIMMLVLSFVLGHVLRRKKIYIIPEASASLLIGLIVGILANISDTETNIRA WFNFHEEFFFLFLLPPIIFQSGFSLSPKPFFSNFGAIVTFAIFGTLLASVVTGVLVYLGGLVFLMYRLPFVECLMFGALI SATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSLVKTHPSGQNIFMVIVRFLETFVGSMSAGVGVGFIS SLLFKYAGLDIDSLQNLESCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKHYAYSNLSQSSQRFVSAFFELISSLAET FVFIYMGFDIAMEQHSWSHIGFIFFSIIFIGIARAANVFSCAYLVNLARPAHRKIPVKHQKALWYSGLRGAMAFALALQS VHDLPEGHGQTIFTATTAIVVLTVLLIGGSTGTMLEALDVVGGDSPNDSPLASIGSVPVYEGNIGYVAPSYDEESSSSGN KIKMKLKEFHKSAGSFTALDRNYLTPFFTSQNGDEGKFDCNFYSELCHLC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | - | – | |
| PANTHER | 18 | 515 | 498 | 1.0E-238 | – | |
| PANTHER | 18 | 515 | 498 | 1.0E-238 | ||
| Phobius | 22 | 43 | 22 | - | – | |
| TMHMM | 22 | 44 | 23 | - | – | |
| TIGRFAM | 31 | 445 | 415 | 3.1E-95 | ||
| Pfam | 33 | 436 | 404 | 1.2E-65 | ||
| Phobius | 44 | 48 | 5 | - | – | |
| Phobius | 49 | 68 | 20 | - | – | |
| TMHMM | 49 | 71 | 23 | - | – | |
| Phobius | 69 | 87 | 19 | - | – | |
| PRINTS | 88 | 99 | 12 | 2.0E-16 | ||
| Phobius | 88 | 105 | 18 | - | – | |
| PRINTS | 102 | 116 | 15 | 2.0E-16 | ||
| Phobius | 106 | 116 | 11 | - | – | |
| TMHMM | 116 | 138 | 23 | - | – | |
| PRINTS | 117 | 125 | 9 | 2.0E-16 | ||
| Phobius | 117 | 146 | 30 | - | – | |
| Phobius | 147 | 152 | 6 | - | – | |
| Phobius | 153 | 173 | 21 | - | – | |
| PRINTS | 157 | 167 | 11 | 2.0E-16 | ||
| Phobius | 174 | 178 | 5 | - | – | |
| Phobius | 179 | 201 | 23 | - | – | |
| Phobius | 202 | 221 | 20 | - | – | |
| TMHMM | 222 | 244 | 23 | - | – | |
| Phobius | 222 | 244 | 23 | - | – | |
| Phobius | 245 | 263 | 19 | - | – | |
| TMHMM | 264 | 286 | 23 | - | – | |
| Phobius | 264 | 286 | 23 | - | – | |
| Phobius | 287 | 305 | 19 | - | – | |
| Phobius | 306 | 328 | 23 | - | – | |
| TMHMM | 306 | 328 | 23 | - | – | |
| Phobius | 329 | 339 | 11 | - | – | |
| Phobius | 340 | 362 | 23 | - | – | |
| TMHMM | 343 | 365 | 23 | - | – | |
| Phobius | 363 | 381 | 19 | - | – | |
| Phobius | 382 | 401 | 20 | - | – | |
| TMHMM | 382 | 401 | 20 | - | – | |
| Phobius | 402 | 406 | 5 | - | – | |
| Phobius | 407 | 428 | 22 | - | – | |
| TMHMM | 411 | 430 | 20 | - | – | |
| Phobius | 429 | 530 | 102 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Sodium ion transport | The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Regulation of pH | Any process involved in the maintenance of an internal equilibrium of hydrogen ions, thereby modulating the internal pH, within an organism or cell. | ||
| Molecular function | Solute:proton antiporter activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out). | ||
| Molecular function | Sodium:proton antiporter activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0278200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…