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LotjaGi6g1v0279500.4

Overview

Field Value
Gene ID LotjaGi6g1v0279500
Transcript ID LotjaGi6g1v0279500.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Myb family transcription factor APL; TAIR: AT3G24120.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q94A57|PHL2_ARATH Protein PHR1-LIKE 2; TrEMBL-Plants: tr|I3SYI1|I3SYI1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0279500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:59624652..59626297) extracted from Lotus japonicus Gifu genome v1.2.

ATGTTATCTGCAGAAGCTACACCGAAAGCTATCATGCGGACCATGAATGTCAAGGGTTTAACTCTGTTTCATTTGAAGAG CCATCTTCAGGTCTATTCCATTCTTTAATAATACCCTGCCCAATTTTAAACTTTGCAATGAAATTGAAACCTTTTCTTGC TGTATTGCAGAAATACAGACTTGGTAAGCAATCAGGGAAAGATTTTAGTGAGGGATGCAAAGATGGTATGGTTGTCATTC CCCTTTGTGGACTTTCCAATCATGGTCCCGTCATCTGATTTTGTTTTGTCCAATTTGTTCTGTGGCGTCTTTCGCCTTTC CCCAGAGAATAAGTATCCGTTTGGATGCAAACCAAAGAGCATTTATTGGAGCTTATTTGTGCATTTTCTAGTAGATAAGC TCCAATAAACCCGTATCCGGACGGGCTATGTCCACCTGGAATTTTAATCTGTATAACTTATGAACCATTCCATAATGGCA CAACTGCTGCTTAGGTTATATTTTGATACAGTTCCCATTGGGGGAGCATATTAGCCTGATATTAGAAAACTGGATAAAGA CCATTTACGGTTAACACATTAGTTGCTCTTTGAATTTGAACAATGATTAACCATTCTTTTTTTACTATGGATTGTCGTTC TTAAATTGGAAAGAATTTTGCCAGGACCTCCTAAATTGTAATTTTAACTAAACTTTTTGTTTTTTTATTGGCTTCATCTA ACAATTTAAAAATTTATGGAAGGTATATCAGGTTCATATCTTTTAGAAAGCCCTGGTTCTGATAACCCTTCTCCAAAGTT GCCAACATCTGATACAAACGAGTAAGGATTTTCATTTAACAAAGACTTATCTTCTTCTTGCAAATGTTTCAGTGGTTTTG ACTTACCTAATTGAGGGGGTTATTAATTTTATGTCTAGGGGTTATGAAATCAAGGAGGCATTAAGAGCACAGATGGAAGT GCAAAGTAAACTACATTTGCAAGTGGAGGTATATTTCATTTCCGTAGTGCAAGTTGTGTACCCTATATAGCTTTGGTGAT TATTTTACCATATTTTCCTAACAAGTGTTGTTGAAACAAGTTGGTGCTTGTTACTTCTGTTTTGTGACATTATTAAAAGA TTCTATTGGAATGATTACTAGATAATATGTGCTGATTTAAAAAAATATCACACTGCAGGCCGAGAAGCACTTGCAGATTC GCCAGGAAGCGGAGCGGAGATACATGGCCATGGTTGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATTAGCGCTACA GTTACAGACACTGATAACCAAAAGTTTCAAGGAATTGGAAGTAAAGCACCAAGAGGTTCCTTGGTTGATCATCCTGGTTT TTACTCCTTGCCGTCGACTGAGGCGGCTGGAGTGAGTGTTCCCGAAGAAGAAAGACCTCACAATCTCCCATCCCAAAGAG CTGATTGTTCAACTGAAAGTTGTTTAACCTCACATGAGAGTTCTGGGGGATTGGTCTTAGAAGGATCTCCAAGTGAGGGG AGAAGAAGGATGCTGGGAATGGATTCTTTTGCAGCACCTTTGATCTGGAGTGAAGCTAAGATGAAAACTCAAGCCATCAA TCTAGCCCATGGTAATTCTCATGGAATATCTAGGTATGGCATGTAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0279500.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTATCTGCAGAAGCTACACCGAAAGCTATCATGCGGACCATGAATGTCAAGGGTTTAACTCTGTTTCATTTGAAGAG CCATCTTCAGAAATACAGACTTGGTAAGCAATCAGGGAAAGATTTTAGTGAGGGATGCAAAGATGGTTCATATCTTTTAG AAAGCCCTGGTTCTGATAACCCTTCTCCAAAGTTGCCAACATCTGATACAAACGAGGGTTATGAAATCAAGGAGGCATTA AGAGCACAGATGGAAGTGCAAAGTAAACTACATTTGCAAGTGGAGGCCGAGAAGCACTTGCAGATTCGCCAGGAAGCGGA GCGGAGATACATGGCCATGGTTGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATTAGCGCTACAGTTACAGACACTG ATAACCAAAAGTTTCAAGGAATTGGAAGTAAAGCACCAAGAGGTTCCTTGGTTGATCATCCTGGTTTTTACTCCTTGCCG TCGACTGAGGCGGCTGGAGTGAGTGTTCCCGAAGAAGAAAGACCTCACAATCTCCCATCCCAAAGAGCTGATTGTTCAAC TGAAAGTTGTTTAACCTCACATGAGAGTTCTGGGGGATTGGTCTTAGAAGGATCTCCAAGTGAGGGGAGAAGAAGGATGC TGGGAATGGATTCTTTTGCAGCACCTTTGATCTGGAGTGAAGCTAAGATGAAAACTCAAGCCATCAATCTAGCCCATGGT AATTCTCATGGAATATCTAGGTATGGCATGTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0279500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLSAEATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDFSEGCKDGSYLLESPGSDNPSPKLPTSDTNEGYEIKEAL RAQMEVQSKLHLQVEAEKHLQIRQEAERRYMAMVERACKMLADQFISATVTDTDNQKFQGIGSKAPRGSLVDHPGFYSLP STEAAGVSVPEEERPHNLPSQRADCSTESCLTSHESSGGLVLEGSPSEGRRRMLGMDSFAAPLIWSEAKMKTQAINLAHG NSHGISRYGM
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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.10.10.60
1 38 38 1.9E-12 –
PANTHER
PTHR31499:SF33
4 250 247 4.4E-154 –
PANTHER
PTHR31499
4 250 247 4.4E-154 –
TIGRFAM
TIGR01557
4 35 32 2.7E-10
IPR006447
SUPERFAMILY
SSF46689
5 36 32 8.6E-6
IPR009057
MobiDBLite
mobidb-lite
39 70 32 - –
MobiDBLite
mobidb-lite
55 69 15 - –
Pfam
PF14379
75 120 46 7.0E-16
IPR025756
MobiDBLite
mobidb-lite
166 185 20 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0279500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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