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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0280500 |
| Transcript ID | LotjaGi6g1v0280500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase, putative; TAIR: AT4G17180.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9M088|E135_ARATH Glucan endo-1,3-beta-glucosidase 5; TrEMBL-Plants: tr|A0A151T707|A0A151T707_CAJCA Glucan endo-1,3-beta-glucosidase 5; Found in the gene: LotjaGi6g1v0280500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59711010..59714441) extracted from Lotus japonicus Gifu genome v1.2.
CTGGTTACTACACAGTACACACAAACACAGTGTTTGAGTGTTTCTTTCTTCACCTTTACTCATTCATAGCATAAACCAAC CACCACACTGTGATGTTGATTCAACCCTGAAACCCTGTTCAAAATCTCTCACCATTTTCACCATTTTGCTAGCAATGTTG GAACCCAGGTTGGGTTTTGTGGTTTGGTCCCTATGGCTTTTATACTGGAGCTTGGTTCCAGCGGTGGAATCAGGTATAGG TGTCAACTGGGGCACTCTTTCTTTCCACCGGCTGAAACCCTCCACGGTGGTTGATCTGCTTAGAGAAAACAGGATCCAAA AAGTGAAGCTGTTTGAAGCTGATTCTGATGTGCTTAAGGCACTCATGGGGAGTGGTATTCAGGTCATGGTTGGGATCCCC AATGAAATGTTGTCTGCCCTCAGCTCCTCTCCTGTTGCTGCTGATTTCTGGGTTCGCCGGAATCTCTCTGCTTATATTGG TGGTAGAAGAGGTGCTGATATCAGGTAAAGTGATACTAGTTAGAAATGGAATAAACCCAATATTTTATTTGATATGTGCA TACAATGAAGCTAGTTTAATGTGTATTGTAAGTTGTAACTTACCTGGGAATATATAGTTACTAGGGTATCAAAAGCTGAA TTCAATCAAGACTGATTTGTATTATCAATTTGACTTTTAAATTTTAATCTTATGGTTCTTAATTACCAGTTCAAGTTGAT TAGAGAAATGAACTTAAGACAAATGATTAAGAATATTTATCTGTGGTGTGAGTTTTGTATCGGATGGTGCTATACAAACA ATTCTTGGATGCATTTCTCTTATTAGTTTGAAATAGAAACTATGATAATTGGATTTTGATCTAGTTCTGAATCCTAGCTA TGTAAGTATCAGCCTATCAGGTCTTTGAATAATGGCTCACAACTCACTTCTATAAGAGAAATTTACAGTAGACAGTACAA GAAGTTTTCATGATTGTTTCCTCCTTGTAACGCTCATGAAACTTGTATGAAATGCCTTTTTGCGTTTTTAGTTTTGCAGT TTTTGCCTTGTAGCAAGATTTTTTAGAAATGTACGAAACATGTTGATTTTCTACTGGCCTTTTACCTTCTACCTTGTATT GCAGGTATGTTGCTGTTGGAAATGAACCCTTCCTTACGAGTTATAATGGTCAATTTCAGAACTTTGTCATTCCAGCCATA TCCAATCTACAACAGTCTTTAGTCAAAGCAAATCTTGCGGGTTATGTGAAGCTAGTTGTCCCTTGCAATGCAGATGCCTA CGAGTCCCCGGGACCTCCTTCCCAAGGGGCATTCCGACCTGAACTGACTCAGATAATAACTCAACTGGTTCAGTTCCTCA ACTCAAATGGTTCTCCATTCGTTGTCAACATCTACCCGTTTCTAAGCCTTTATGACAATGGAGATTTTCCCCAAGATTAC GCGTTCTTTGAGGGAACTACTCATCCTGTCACAGATGCTTCTAATGTTTACACCAATGCATTTGATGGAAACTACGACAC TTTAGTCGCAGCCCTCAGTAAACTCGGATACGGTCAGATGCCCATAGTTATTGGGGAAATTGGTTGGCCCTCAGATGGAG CCCTTGGTGCAAATGTCACCGCTGCAAAGGTTTTCAATCAAGGCCTCATCTATCACATTGCAAGTAACAAAGGGACCCCT TTGAGGCCAGGTATTCCTCCTATGGATGTTTATCTTTTCAGTTTACTTGACGAAGGAGCTAAGAGCACGCTTCCGGGAAA CTTTGAAAGACACTGGGGGATATTTTCGTTTGATGGGCAGGCTAAGTATCCATTAGACCTTGGACTTGGAAAGAAGGAAT TAAGAAATGCAAGGAATGTTCAGTATCTTCCATCTAGATGGTGTGTGGCAAACCCCTCCAGTGATTTGACTAATGTAGTA AACCATATGAGAATTGCCTGTAGTGTTGCGGACTGCACCACGCTTAACTATGGAGGTTCATGCAATGAAATCGGCGAGAA GGGTAATGTATCATATGCTTTTAACAGTTACTATCAGCTAAGAATGCAAGATTCACAAAGCTGCAATTTTGATGGGCTTG GTATGATTACTTTCCTGGACCCTTCAGTTGGTGATTGTCGTTTTCTTGTAGGCGTTGGCTCAGATTCATCGACATCTCAA ACAACCTATCAGTGGTGGGTTGTAGTATTACTTCTAATTCTACATGGGACTTTCTCTCTTTCAAAGTGATTTAGAGGTTT CATTAGTGGGTTTTTCATGGTACCCCCTTCTGAGACTGTTAGAACTAGAATAGCTGATATACTACTTAATCTTAGAAAGA TTCAAAAGATTCATCGTTTGTAGCCCTGTATATGAACAAGCCATTGTCATATAAGGGACTGTGTAAACATTGTCACGATG GTATTGAATATTGCACATATTTATTTCATGTTTGTTCTGGTGATACTTGTTGAATTAATTGAATGAATCAGATTATCGTT TTCCAGTTCACCTTTCTTAGAACATGAACTGCAAGTGATTTTTGAATTGGAATCTCTTGAGGATGAACATATTCAAAGTA AAAGTTTGATTACATTAGTAATCAATATTCAATTACACAACAAACTTCTATGCAGGGCACTTATTCATTTGGTTTCCTGC ATAATTATTTAGTAGCACATACTTATGTTTCTGGGTAAGAGGTGTATGAACTTAGAGGGTGTCTTCTTTAGCCTTGTGAC GTTCAAGTTGAAGAGCAACAACCATCTACACAGCATACTTTGCCACATCTGAGCATTGGCTTCAATATGAACGTGCAGCA TCGACAACCTTCACAGAAAAAAAGACATAACAGTTACTTTTAGCTTACAAGAATTTTAGGTGGCACTACAAGACTATATT TAGATATCCATTGACACTAGTGTACGGTGAAATAAACAGTTAATGGAACTCTTGTGGATATGAAAGTTTGTTCACATTGC ACTCAATTGAGATCCAAAGACACTAAATTGGTGATGAGTGCTAAAGCACAAATGCTGATGAGCTTTACCTGCTTGAGGAT AGTAAACCATATTATTGGAAGTTGGGAGATGACCGCTTGTTTTATCTGCATTGGCTGAAATGGCTGTGAAAGCCATCACC AGCAAGAGGCATGAGAAAGCAATGACCAAAGCTGCTTTTTTCACCATCTTCTTCACCTTGCTCATTCTTTTACTACCCTT GCAAACCTATTTATAGTAGTAGGTACTCATTTGGTTTGGACAATGCTTGGAGCTAAAAGTGGTGGCATTCTACAACTTGC TACCTTAGCTAGTGTTGCATATCCTTTTGCTTGAAACATGGGCAGCGTTTGTCTGTACTCTGTACACACTTGTCCTCATC TATTATGCTCGCCAATTTTGACTATCCCCATGTTTCAATACAAATTCCTATCAGAAAACCTTCACTACTATT
CDS sequence (LotjaGi6g1v0280500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGAACCCAGGTTGGGTTTTGTGGTTTGGTCCCTATGGCTTTTATACTGGAGCTTGGTTCCAGCGGTGGAATCAGG TATAGGTGTCAACTGGGGCACTCTTTCTTTCCACCGGCTGAAACCCTCCACGGTGGTTGATCTGCTTAGAGAAAACAGGA TCCAAAAAGTGAAGCTGTTTGAAGCTGATTCTGATGTGCTTAAGGCACTCATGGGGAGTGGTATTCAGGTCATGGTTGGG ATCCCCAATGAAATGTTGTCTGCCCTCAGCTCCTCTCCTGTTGCTGCTGATTTCTGGGTTCGCCGGAATCTCTCTGCTTA TATTGGTGGTAGAAGAGGTGCTGATATCAGGTATGTTGCTGTTGGAAATGAACCCTTCCTTACGAGTTATAATGGTCAAT TTCAGAACTTTGTCATTCCAGCCATATCCAATCTACAACAGTCTTTAGTCAAAGCAAATCTTGCGGGTTATGTGAAGCTA GTTGTCCCTTGCAATGCAGATGCCTACGAGTCCCCGGGACCTCCTTCCCAAGGGGCATTCCGACCTGAACTGACTCAGAT AATAACTCAACTGGTTCAGTTCCTCAACTCAAATGGTTCTCCATTCGTTGTCAACATCTACCCGTTTCTAAGCCTTTATG ACAATGGAGATTTTCCCCAAGATTACGCGTTCTTTGAGGGAACTACTCATCCTGTCACAGATGCTTCTAATGTTTACACC AATGCATTTGATGGAAACTACGACACTTTAGTCGCAGCCCTCAGTAAACTCGGATACGGTCAGATGCCCATAGTTATTGG GGAAATTGGTTGGCCCTCAGATGGAGCCCTTGGTGCAAATGTCACCGCTGCAAAGGTTTTCAATCAAGGCCTCATCTATC ACATTGCAAGTAACAAAGGGACCCCTTTGAGGCCAGGTATTCCTCCTATGGATGTTTATCTTTTCAGTTTACTTGACGAA GGAGCTAAGAGCACGCTTCCGGGAAACTTTGAAAGACACTGGGGGATATTTTCGTTTGATGGGCAGGCTAAGTATCCATT AGACCTTGGACTTGGAAAGAAGGAATTAAGAAATGCAAGGAATGTTCAGTATCTTCCATCTAGATGGTGTGTGGCAAACC CCTCCAGTGATTTGACTAATGTAGTAAACCATATGAGAATTGCCTGTAGTGTTGCGGACTGCACCACGCTTAACTATGGA GGTTCATGCAATGAAATCGGCGAGAAGGGTAATGTATCATATGCTTTTAACAGTTACTATCAGCTAAGAATGCAAGATTC ACAAAGCTGCAATTTTGATGGGCTTGGTATGATTACTTTCCTGGACCCTTCAGTTGGTGATTGTCGTTTTCTTGTAGGCG TTGGCTCAGATTCATCGACATCTCAAACAACCTATCAGTGGTGGGTTGTAGTATTACTTCTAATTCTACATGGGACTTTC TCTCTTTCAAAGTGA
Protein sequence (LotjaGi6g1v0280500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLEPRLGFVVWSLWLLYWSLVPAVESGIGVNWGTLSFHRLKPSTVVDLLRENRIQKVKLFEADSDVLKALMGSGIQVMVG IPNEMLSALSSSPVAADFWVRRNLSAYIGGRRGADIRYVAVGNEPFLTSYNGQFQNFVIPAISNLQQSLVKANLAGYVKL VVPCNADAYESPGPPSQGAFRPELTQIITQLVQFLNSNGSPFVVNIYPFLSLYDNGDFPQDYAFFEGTTHPVTDASNVYT NAFDGNYDTLVAALSKLGYGQMPIVIGEIGWPSDGALGANVTAAKVFNQGLIYHIASNKGTPLRPGIPPMDVYLFSLLDE GAKSTLPGNFERHWGIFSFDGQAKYPLDLGLGKKELRNARNVQYLPSRWCVANPSSDLTNVVNHMRIACSVADCTTLNYG GSCNEIGEKGNVSYAFNSYYQLRMQDSQSCNFDGLGMITFLDPSVGDCRFLVGVGSDSSTSQTTYQWWVVVLLLILHGTF SLSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 16 | 11 | - | – | |
| PANTHER | 11 | 461 | 451 | 6.2E-257 | – | |
| PANTHER | 11 | 461 | 451 | 6.2E-257 | – | |
| Phobius | 17 | 23 | 7 | - | – | |
| Phobius | 24 | 464 | 441 | - | – | |
| Gene3D | 26 | 357 | 332 | 7.4E-113 | – | |
| Pfam | 28 | 348 | 321 | 8.1E-66 | ||
| SUPERFAMILY | 28 | 348 | 321 | 9.04E-80 | ||
| ProSitePatterns | 262 | 275 | 14 | - | ||
| SMART | 368 | 450 | 83 | 1.5E-34 | ||
| Pfam | 369 | 437 | 69 | 2.5E-16 | ||
| Phobius | 465 | 483 | 19 | - | – | |
| Phobius | 484 | 484 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi6g1v0280500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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