Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0283700 |
| Transcript ID | LotjaGi6g1v0283700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein FAR1-RELATED SEQUENCE 11; TAIR: AT5G28530.2 FAR1-related sequence 10; Swiss-Prot: sp|Q9LKR4|FRS10_ARATH Putative protein FAR1-RELATED SEQUENCE 10; TrEMBL-Plants: tr|I1L023|I1L023_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0283700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:60013223..60016756) extracted from Lotus japonicus Gifu genome v1.2.
AAGCAAAACACACATTTTAGGTTCATTCATTTAATGAATGTATCTAATCATTATTAATGGTTAGATACATTCATTAAATG AATGAATCTAAAATGTCTTTTTTGCTTATATATGTGACAGGATGGTATATAGATTAAGAGCTCTGTGAAAAACGATCCCC TCTAGGCAATTTCAAATGGCCCAATAAAATAATAACCCAAAATAAAAGTCCAAAATTTGGAAAAAAAAACACCTTACAAA ATAAAAATTCCAAATTGGTTTTCTTTTTCTAGTTTCCTGAATTTCTCAGAATTTGACCAAAAAATAGAACATAGAACAGG GGTTTGAGCTCTCTGTCTTTTGTTGTTGTACCATGTTGTTTTCCTTCTGGTCAAATTCTCCTGGCTTCAGTTTCAGGCGG CAAAGATTGTAACTTGTTGCAAGCTTAATACATGCTTGGGAAATTTCTGGGTATTAATTTTTTTTTCCTTTTTATTATCC ATTTTGTCAATCCTTTGATTTTTCAGCTCGTTTATTGATTTTTGTTCCTGTTCTGGTTTTGTTTTACACTACCTGCTTCT GGATCACTTTAAAGTTTAAAACTTGGAGTGATTTTGACACTACATTCAATCGGAGCAATGTTGTCTGTTCCTTCAAAAAA CATTTGGATTCGGAGGCAACAATGCCCTTGTGGAGATTGGAAGTGTTATGTTACACATGATGAAGTTGATGCTGAAGAGG GTTCTGCAGCATCAGAATTGGTGAATGCAGAGAAAGCTTTATCTGGAGCTATGATTACCCCTTATGTTGGAATGGTGTTT AAGAGTGATGATGATGCTTTTGAGTATTATGGCAATTTTGCTAGGAAGAATGGATTTTCTATTAGGAAAGAAAGGTCTAG GATTAGCCCTCAGTTGGGCATTTACAAACGCGACTTTGTTTGTTACCGGTCCGGTTTTGCTCCGATGAAGAAGAAGCCCA ATGGAGAGCATCATAGGGATAGAAAATCGGTGAGGTGTGGATGTGATGCGAAAATGTATTTGTCGAAGGAGGTTGTGGAA GGGGTTTCACAATGGTTTGTTGTGCAGTTTAGTGATGTACACAATCATGAACTTTTGGAAGATGATCAAGTTCGCCTTCT GCCTGCGTATCGTAAGATTCACGAGGCGGATCAAGAGCGTATACTCTTGCTTTCGAAAGCCGGGTTTCCGATACATAGAA TTGTGAAAATGCTTGAGCTGGAAAAGGGGATTCAAGGTGGGCAACTTCCTTTCTTGGAAAGGGATGTGAGGAACTTTGTT CAGAACCGTAAGAAGATTGTTCAAGAGAATGAGGTGTTGCTCAGTGAGAAAAGAGAAAACGATACACTGGAACTTCTTGA GGTTTGCAAAGCCGTGAAAGAAGCGGATGATGGCTTTGTTTACGATTTTACAGTGGATGAGAATGACAAGGTTGAAAATA TAGGTTGGTCATATGGTGACTCTATTAATGCAAATGCTATGTTTGGTGATGTAGTTTACTTTGACACTACTTATCGATCA ATCACTTATGGATTGGTTTTTGGAGTATGGTTTGGTATCGATAGCTATGGTAGAACCATTTTTTTCGGTTGTGTCTTATT GCAGGATGAAACACCCCAATCCTTCACATGGGCATTACAGGTTTACAACTAGCTTCATCTGTATTCTGTATGCGATTTTG CTTCTGCCTTCATTGATATTCCTCTTATAATGATTATTCCTCGATACAGGCTTTTATCCGGTTCATGAGAGGAAGATGTC CACAAACAGTTCTATCTGATCTAGACCCTGGGCTTAGAGATGCCATTAGAAACGAATTTCCAGCTACTAAACAAGTAATT CCTCTGTCGAAGATTCTAAACAAGTTGCCAAGCTGGTATTCTTTTCCTCTTGGGCCTCGCTATGCAGAATTTAGATCAGA GTTTGATGCCTTATTTCACATTGAGAATACAGAAGAATTCGAACTTCAATGGAGTCAAATGGTTTCTGTGTATGGACTTG GCTCAGATAAACACACTGACTTACTGTATTCTGTTCGAGCATCCTGGGCGCAATGCTATGTAAGAGGCTATTTTTTGGCC CGAATGGCAACAATGTCTTACTCCAAATCTATAGATGCTTTTCTGAAAGGGGTCTTCACTGAACAACATACATGTTTGCG TAGCTTTTTTGAGCAGGTATGTTAGTAAGAGTATTTTTTCTCTCATAAGCTTGCACTAGCCTTGCTCACTTTTCTCTGTG ATGACCTTTCTTCCTTCTGGTGGATACTTTTGCAGGTTGGTATTTCTGCAAATTTGCAACATCAATCACATCAGGGGACT CAATATGTGCATCTCAGAACTTGCATACCCATCGAAGAGCATGCTCAGAGTATTCTCACGCCTTTTGCCTTCAATTGTTT GCAGCAAGAATTATTGCTGACAATGCAATATGCTACATCTGAAATGGCCAATGGATCATATATTATAAGACACTTCAAAA GGATGGAAGAAGAATGGCTCGTAATGTGGTTGGCTGATACTGAACAGATACACTGTTCTTGCAAAGAATTTGAGTCCTCA GGAATATTATGCAGACATGCTCTTCGTGTATTTGTGTTGAAGAATTACTTTCAGTTGCCTGACAACTACTATTTAAGTCG ATGGAGACGGGAATGCGCTTTACTTGTTGATGATGATCATAATAATCAAAGTACTGGTGGGGAATGGTTTCAAGAATACC ATTCCCTAGCTGAAACTTTATTTTCAGAATCATCAATTACTAGGGAGCGATCTCACTATGTTCGCAAAGAATTGACAAAA GAATTAACTAGGATTCTTGATGAAGTTAGAAATTTACCCGAGACTGATGTGACCAGCATGAACATGACTGTTTCGCCAAC CGGCTAGTTTGATGAGATGAAATGCAAGTTTGTAACCACTGGACTCGTGATAATTCAATGGAAAGAAGTTGCAAAGTAAA GAATACTCAGAGTGGAAATGCCAAAAACACTTTCAGCTTATTTTACTTAGACATTGAGATATGATTTGTTGCTCAAGTGT TAGCAGCTTTGGTTTCCCCTTGATTGATAAGCAGGCTTCAAAGAAAGTTCATGATGCAGAAGGGTTTTACTGATGGGCGT GCTCTATGCAGTTGATGTCATTGCTTAAGTGCATGTTTGGAATCTACATTTAGGTATCAAAATCATGTTAATCAATAAGC TACAATATGAAGCTTCTTTGCTAACGTGTGATTTGGAGTGTTAGTCCAACACACATTCAAACATGTTCTAAGTTGACAAT GCCTTGGCAATTCATTTGGTTAATAGAAAGATGAAAGTAAATATTGTTATTAGCACAGGTCAGTATGAAGTAAAATCTGG TTACTTTGTGAAATTGAGTCATGTACCTTCTCATTGTAAGGAAAATGTGGGAGCTTTAGCAACACATTCTTTCACATTTT CTTCAAACATTCTTTTTTATTGATTAAATTGATGTTGCATTTGTTGAATCATGAGTATCATTCCTGATTTGGTGCTTCCA TTTCGTATTTAATG
CDS sequence (LotjaGi6g1v0283700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTCTGTTCCTTCAAAAAACATTTGGATTCGGAGGCAACAATGCCCTTGTGGAGATTGGAAGTGTTATGTTACACA TGATGAAGTTGATGCTGAAGAGGGTTCTGCAGCATCAGAATTGGTGAATGCAGAGAAAGCTTTATCTGGAGCTATGATTA CCCCTTATGTTGGAATGGTGTTTAAGAGTGATGATGATGCTTTTGAGTATTATGGCAATTTTGCTAGGAAGAATGGATTT TCTATTAGGAAAGAAAGGTCTAGGATTAGCCCTCAGTTGGGCATTTACAAACGCGACTTTGTTTGTTACCGGTCCGGTTT TGCTCCGATGAAGAAGAAGCCCAATGGAGAGCATCATAGGGATAGAAAATCGGTGAGGTGTGGATGTGATGCGAAAATGT ATTTGTCGAAGGAGGTTGTGGAAGGGGTTTCACAATGGTTTGTTGTGCAGTTTAGTGATGTACACAATCATGAACTTTTG GAAGATGATCAAGTTCGCCTTCTGCCTGCGTATCGTAAGATTCACGAGGCGGATCAAGAGCGTATACTCTTGCTTTCGAA AGCCGGGTTTCCGATACATAGAATTGTGAAAATGCTTGAGCTGGAAAAGGGGATTCAAGGTGGGCAACTTCCTTTCTTGG AAAGGGATGTGAGGAACTTTGTTCAGAACCGTAAGAAGATTGTTCAAGAGAATGAGGTGTTGCTCAGTGAGAAAAGAGAA AACGATACACTGGAACTTCTTGAGGTTTGCAAAGCCGTGAAAGAAGCGGATGATGGCTTTGTTTACGATTTTACAGTGGA TGAGAATGACAAGGTTGAAAATATAGGTTGGTCATATGGTGACTCTATTAATGCAAATGCTATGTTTGGTGATGTAGTTT ACTTTGACACTACTTATCGATCAATCACTTATGGATTGGTTTTTGGAGTATGGTTTGGTATCGATAGCTATGGTAGAACC ATTTTTTTCGGTTGTGTCTTATTGCAGGATGAAACACCCCAATCCTTCACATGGGCATTACAGGCTTTTATCCGGTTCAT GAGAGGAAGATGTCCACAAACAGTTCTATCTGATCTAGACCCTGGGCTTAGAGATGCCATTAGAAACGAATTTCCAGCTA CTAAACAAGTAATTCCTCTGTCGAAGATTCTAAACAAGTTGCCAAGCTGGTATTCTTTTCCTCTTGGGCCTCGCTATGCA GAATTTAGATCAGAGTTTGATGCCTTATTTCACATTGAGAATACAGAAGAATTCGAACTTCAATGGAGTCAAATGGTTTC TGTGTATGGACTTGGCTCAGATAAACACACTGACTTACTGTATTCTGTTCGAGCATCCTGGGCGCAATGCTATGTAAGAG GCTATTTTTTGGCCCGAATGGCAACAATGTCTTACTCCAAATCTATAGATGCTTTTCTGAAAGGGGTCTTCACTGAACAA CATACATGTTTGCGTAGCTTTTTTGAGCAGGTTGGTATTTCTGCAAATTTGCAACATCAATCACATCAGGGGACTCAATA TGTGCATCTCAGAACTTGCATACCCATCGAAGAGCATGCTCAGAGTATTCTCACGCCTTTTGCCTTCAATTGTTTGCAGC AAGAATTATTGCTGACAATGCAATATGCTACATCTGAAATGGCCAATGGATCATATATTATAAGACACTTCAAAAGGATG GAAGAAGAATGGCTCGTAATGTGGTTGGCTGATACTGAACAGATACACTGTTCTTGCAAAGAATTTGAGTCCTCAGGAAT ATTATGCAGACATGCTCTTCGTGTATTTGTGTTGAAGAATTACTTTCAGTTGCCTGACAACTACTATTTAAGTCGATGGA GACGGGAATGCGCTTTACTTGTTGATGATGATCATAATAATCAAAGTACTGGTGGGGAATGGTTTCAAGAATACCATTCC CTAGCTGAAACTTTATTTTCAGAATCATCAATTACTAGGGAGCGATCTCACTATGTTCGCAAAGAATTGACAAAAGAATT AACTAGGATTCTTGATGAAGTTAGAAATTTACCCGAGACTGATGTGACCAGCATGAACATGACTGTTTCGCCAACCGGCT AG
Protein sequence (LotjaGi6g1v0283700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSVPSKNIWIRRQQCPCGDWKCYVTHDEVDAEEGSAASELVNAEKALSGAMITPYVGMVFKSDDDAFEYYGNFARKNGF SIRKERSRISPQLGIYKRDFVCYRSGFAPMKKKPNGEHHRDRKSVRCGCDAKMYLSKEVVEGVSQWFVVQFSDVHNHELL EDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLELEKGIQGGQLPFLERDVRNFVQNRKKIVQENEVLLSEKRE NDTLELLEVCKAVKEADDGFVYDFTVDENDKVENIGWSYGDSINANAMFGDVVYFDTTYRSITYGLVFGVWFGIDSYGRT IFFGCVLLQDETPQSFTWALQAFIRFMRGRCPQTVLSDLDPGLRDAIRNEFPATKQVIPLSKILNKLPSWYSFPLGPRYA EFRSEFDALFHIENTEEFELQWSQMVSVYGLGSDKHTDLLYSVRASWAQCYVRGYFLARMATMSYSKSIDAFLKGVFTEQ HTCLRSFFEQVGISANLQHQSHQGTQYVHLRTCIPIEEHAQSILTPFAFNCLQQELLLTMQYATSEMANGSYIIRHFKRM EEEWLVMWLADTEQIHCSCKEFESSGILCRHALRVFVLKNYFQLPDNYYLSRWRRECALLVDDDHNNQSTGGEWFQEYHS LAETLFSESSITRERSHYVRKELTKELTRILDEVRNLPETDVTSMNMTVSPTG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 692 | 692 | 0.0 | – | |
| PANTHER | 1 | 692 | 692 | 0.0 | ||
| Pfam | 69 | 160 | 92 | 1.2E-22 | ||
| Pfam | 292 | 378 | 87 | 1.2E-14 | ||
| ProSiteProfiles | 564 | 600 | 37 | 9.755 | ||
| Pfam | 571 | 596 | 26 | 1.5E-7 | ||
| SMART | 575 | 602 | 28 | 4.5E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi6g1v0283700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…