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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0285400 |
| Transcript ID | LotjaGi6g1v0285400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein 4; TAIR: AT4G16490.1 ARM repeat superfamily protein; Swiss-Prot: sp|O22193|PUB4_ARATH U-box domain-containing protein 4; TrEMBL-Plants: tr|I1MFP6|I1MFP6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0285400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:60293988..60295440) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTTTCGTTAGAGGAATCTCGCTCCAATTCGAGCCGTTTCCCCTTATCGCAAACCTTCCTCCACCACCACCACCACTC CTCCAAAACGCAGCGTCACATAGGCAGGTCCATGCGCACCATCCGCTCCAACTTCTTCCAAGACGACAACAGCAGCACCT GCTCCTTCACCGAGAAATCCACCTGCTTCTCGGAAAATCTCACCGACTCCGTCGTCGACCTCCGCCTCGGTGAACTCGCC ACCCGGAGCAACAAATCTCACAGATCCTCGTTCGCCGACGAGGACCTTCTCGATCTCTCGCAGGCCTTCAGCGACTTCTC CGCCTGCAGCAGCGACATCTCCGGCGAGTTACAGCGCCTCGCTACACTTCCCTCGCCGGAGTATTTCCCCGACGCCGCCG GAGATGAAAATCCCCAGCCTGAGCCGGAGCCTTGCATGGGGTTTCTGCAGAGGGAGAATTTCTCAACCGAGATCATCGAG AGCATCTCCCCGGAGGATCTTCAGCCGACGGTGAAGCTCTGCATCGACGGGCTCCAGTCTACATCTGTCAACGTGAAGCG ATCCGCGGCGGCGAAGCTGAGGCTACTTGCGAAGAATCGCGCTGATAACCGTGTTCTGATCGGGGAATCTGGTGCGGTTC CTGTTCTCGTTCCGCTGCTTCGGTGCAGCGATCCGTGGACGCAGGAGCATGCGGTGACGGCGCTGTTGAACCTGTCACTC AATGATGAGAACAAGAAGCTGATAACCAATGCCGGAGCTGTGAAGTCGTTGATTTATGTGCTGAAGACGGGGACGGAGAC TTCGAAGCAGAACGCGGCGTGTGCTTTGCTGAGCCTTGCGTTGGTGGAGGAGAACAGGAGCTCGATCGGCGCTTCCGGGG CGATACCGCCGCTGGTTTCGCTGCTGATAAATGGTTCCAGTAGGGGGAAGAAGGATGCGCTGACAACGCTGTACAAGCTG TGCTCTGTGAAGCTGAACAAGGAGAGGGCGGTGAACGCTGGAGTGGTGAAGCCGCTGGTGGATCTTGTGGCGGAGCAAGG GACTGGTCTGGCGGAGAAGGCGATGGTGGTGCTCAACAGCTTGGCTGCGGTTCAGGATGGGAAGGATGCGATTGTGGAAG AAGGTGGGATAGCTGCTCTTGTGGAAGCCATTGAAGATGGGTCAGTGAAGGGGAAAGAGTTTGCTGTTTTGACACTTCTG CAGCTGTGTGTTGACAGTGTCAGGAACAGAGGGCTTCTTGTGAGAGAGGGTGGGATACCCCCTCTTGTTTCTCTTTCACA GTCTGGAACTCCTCGAGCTAAGCACAAGGTGAGCGAGTTCCTTCCAATTTCAATCTACCCAATCTACCCTTTTGAATTGA ACTCTAAATTCTTGTTTGCTTGGTATGATAGGATTCAAAACTTTTTCTGTGCATATATGGTAGTAATAGTAAAGTCTAGT TCAGATAATTTGA
CDS sequence (LotjaGi6g1v0285400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTCGTTAGAGGAATCTCGCTCCAATTCGAGCCGTTTCCCCTTATCGCAAACCTTCCTCCACCACCACCACCACTC CTCCAAAACGCAGCGTCACATAGGCAGGTCCATGCGCACCATCCGCTCCAACTTCTTCCAAGACGACAACAGCAGCACCT GCTCCTTCACCGAGAAATCCACCTGCTTCTCGGAAAATCTCACCGACTCCGTCGTCGACCTCCGCCTCGGTGAACTCGCC ACCCGGAGCAACAAATCTCACAGATCCTCGTTCGCCGACGAGGACCTTCTCGATCTCTCGCAGGCCTTCAGCGACTTCTC CGCCTGCAGCAGCGACATCTCCGGCGAGTTACAGCGCCTCGCTACACTTCCCTCGCCGGAGTATTTCCCCGACGCCGCCG GAGATGAAAATCCCCAGCCTGAGCCGGAGCCTTGCATGGGGTTTCTGCAGAGGGAGAATTTCTCAACCGAGATCATCGAG AGCATCTCCCCGGAGGATCTTCAGCCGACGGTGAAGCTCTGCATCGACGGGCTCCAGTCTACATCTGTCAACGTGAAGCG ATCCGCGGCGGCGAAGCTGAGGCTACTTGCGAAGAATCGCGCTGATAACCGTGTTCTGATCGGGGAATCTGGTGCGGTTC CTGTTCTCGTTCCGCTGCTTCGGTGCAGCGATCCGTGGACGCAGGAGCATGCGGTGACGGCGCTGTTGAACCTGTCACTC AATGATGAGAACAAGAAGCTGATAACCAATGCCGGAGCTGTGAAGTCGTTGATTTATGTGCTGAAGACGGGGACGGAGAC TTCGAAGCAGAACGCGGCGTGTGCTTTGCTGAGCCTTGCGTTGGTGGAGGAGAACAGGAGCTCGATCGGCGCTTCCGGGG CGATACCGCCGCTGGTTTCGCTGCTGATAAATGGTTCCAGTAGGGGGAAGAAGGATGCGCTGACAACGCTGTACAAGCTG TGCTCTGTGAAGCTGAACAAGGAGAGGGCGGTGAACGCTGGAGTGGTGAAGCCGCTGGTGGATCTTGTGGCGGAGCAAGG GACTGGTCTGGCGGAGAAGGCGATGGTGGTGCTCAACAGCTTGGCTGCGGTTCAGGATGGGAAGGATGCGATTGTGGAAG AAGGTGGGATAGCTGCTCTTGTGGAAGCCATTGAAGATGGGTCAGTGAAGGGGAAAGAGTTTGCTGTTTTGACACTTCTG CAGCTGTGTGTTGACAGTGTCAGGAACAGAGGGCTTCTTGTGAGAGAGGGTGGGATACCCCCTCTTGTTTCTCTTTCACA GTCTGGAACTCCTCGAGCTAAGCACAAGGATTCAAAACTTTTTCTGTGCATATATGGTAGTAATAGTAAAGTCTAG
Protein sequence (LotjaGi6g1v0285400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSLEESRSNSSRFPLSQTFLHHHHHSSKTQRHIGRSMRTIRSNFFQDDNSSTCSFTEKSTCFSENLTDSVVDLRLGELA TRSNKSHRSSFADEDLLDLSQAFSDFSACSSDISGELQRLATLPSPEYFPDAAGDENPQPEPEPCMGFLQRENFSTEIIE SISPEDLQPTVKLCIDGLQSTSVNVKRSAAAKLRLLAKNRADNRVLIGESGAVPVLVPLLRCSDPWTQEHAVTALLNLSL NDENKKLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENRSSIGASGAIPPLVSLLINGSSRGKKDALTTLYKL CSVKLNKERAVNAGVVKPLVDLVAEQGTGLAEKAMVVLNSLAAVQDGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLL QLCVDSVRNRGLLVREGGIPPLVSLSQSGTPRAKHKDSKLFLCIYGSNSKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 441 | 441 | 3.8E-219 | – | |
| PANTHER | 1 | 441 | 441 | 3.8E-219 | – | |
| SUPERFAMILY | 168 | 434 | 267 | 2.59E-46 | ||
| Gene3D | 169 | 362 | 194 | 2.2E-38 | ||
| SMART | 200 | 240 | 41 | 0.0056 | ||
| Pfam | 202 | 239 | 38 | 1.2E-7 | ||
| ProSiteProfiles | 211 | 253 | 43 | 12.652 | ||
| SMART | 241 | 281 | 41 | 3.3 | ||
| SMART | 282 | 322 | 41 | 0.88 | ||
| Pfam | 284 | 322 | 39 | 1.8E-5 | ||
| SMART | 323 | 363 | 41 | 200.0 | ||
| ProSiteProfiles | 334 | 376 | 43 | 10.237 | ||
| Gene3D | 363 | 448 | 86 | 1.9E-12 | ||
| SMART | 364 | 404 | 41 | 8.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0285400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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