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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0286500 |
| Transcript ID | LotjaGi6g1v0286500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|I1MFN9|I1MFN9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0286500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:60384849..60389916) extracted from Lotus japonicus Gifu genome v1.2.
CAGGCCAGGTCGTCAAATTAAATGGCTCAAAACATTAAAAACATGCTTCTTCTATGTTAAATTAATTGCATTTACCATTT GATTTGAACAAAACATTGGGAATTTGTTATTAATTTTAGGGAGGGCAGTGAAAAATACCCTTCCTCTTGTACATAACTAG TTTGTGTATGGTGTGGTCACGGAGGTCTCATGCCTGTCCTGTCCACTTGATTAATAATTAATATTTATTTCAAACATCAA CGCCAAAAATATCAACAAAAATATATGTGTTGTTCAAAGTGAATAGGCCAGGCTTGAGTTATTTTAACGTGTGGTCTTTC ATTCAGCCCAATACAACCATTTTCAGCATGGTAAAAAAAAACCCAGCCTGTTGCTTTAGTTTTGCCCTCATGTTCATTGA GACCTTTCTCTTTAATTAAATTTAAAATGTAGCAAGAAAAAAAAGAGCCCATTAGCTGAGCTGACTTGAGTACTTGACCA TTGAAGTTTGATAATGATCGCGTGGTGCTGATGATCTTATGGGTGCCCACTAGGGTAGATCATTAATATTTTGGTCCACC GGTGCACCATGCTTTATCACCATTTGATCTTGACATCTTGAAATATTCTTTAATTGAATGCTCAAGATTTGATAGATGAA AAAAGGGTAAAAATGTAAATGACTCAAACACTTCTTCCCCTCCCCTTCCCTTATTGTTGCAGAACTGAATCACCGTCCAA AGCCCTCAATTCAATCTGCAATTCCATTTGTTTCATAGCTCACGGCGCCGCCGCGCCACCTACAACCAAGCCTTACCGTC CTTCTCTTTCTATTGGCCTCGCCATCAACCTCGACCCCGATTCCGACAACATCGGTAAACTTTCGTCAACACCCGCTTGA AGGTGTGGCGGTGGTGAAAGGCTTAATCTTTCAAAGATGGGTGTTTCCTCTTCATCTTCGCCATGAAGCTCTGCCTCAAA ATCTCGTTCAGGTGGACTCACACCACCAGGAGCCATGACGCTGTTAGAAGCACAGCCGCTCCATCAAAGTTTCTCACCGT TGACGACATCCCAGATCTGACCCAAATCAACAGAGAGCCCAGAAAAATCGAACATAACCCATAACTATCGAAAGGATTTG AGAGAGGGAGGGATTCAGAGGAACAAAGAGACATTAGAACAATAACGAAAGAGATAAAGGTATTGGATCGTTAGGCACAC ACTGATAGTTGGCCGGAGATGGTTGCGCCACCGAGACGGCGAAATCAAATTCACCCTTTCTTCTAAGAAGTGTTCAGAAG AAAATGGAGAAATCAAAATTCCCACTGAAGTCAAAGAAGGAAGGCCATGGTTAGGGGGAACAAAGAGAAATCAAAATTGA AAAAAAAAAAGGAAGGAAAAGGGGAGAAGAGAAAAAGTCTAAAATACCCAGAGTGCAAAGTCTGAAATACCCCTAGTCCA CCGGTGGACCGAAATACTAATAGCCTACCCTAGTGTAGCCCACCCTGGTGGGCACCGATCTTATGCATTGTTGTACACTT GTACTGCTTTTTAATACTTTTTTCCATAATGATATTGTTGAGTCACTACATGACTTTAATCATCAACTTGACAAGAAAAT TACATCTAGTTTGGCCTAAAATTTTTGAGTTTTAATAATTTTATTTTATATTTCTTTTTCATCTCATTTTTAAAGCTCAT TTTTTCTTCTTATCTCTTTTTAAGAAAAATCTCACCTTCTTTTTATAACTTTATGAGCTTTTGCCCTCTAAAACCGCCAC AAAAGCAAACACAGATGTCGATTGAATGTCGAATTTTGCAGCTGTGGCCTATGAATGTACCGGAACTGTTGAATCTTGCC GTTTCAACTGAGGCAAAAGACTTTGACTGATAATGGTGGATAGAAAATTGTTAATTCACATGGTTGTCCATGCTTCTCAC ATCAACATCATGTGATTCATCATGATCATGTCATGAGTCACCCATGCCATACCATACCCACCACGAAACGCGTGCTCTAC CAAACCTGCCAAAACCTAACCAAACCTAAGGCTCAGAGCTCGCATCAGTCAACTCCTTCCATTTCCATTTCCATTTCCAC CGCAAAACCCTACCCTCATGGCGGAGGAGATCCCGGTGGAGGTCATCGCCGACATCCTCTCCCGTCTTCCGGTGACCTCC CTCCTCCGATTCCGGTCAATCTCCAAGTCATGGCGCTCCCTCATCGACAGCAAACACTTCATGAAACTCCACCTCAACAA CTCCCTTACCAATCCCAATCCCAATCTCACCAATCTCATCCTCCGCCACAACACCGACCTCTACCGCGCCGATTTCCCCT CCATCGGTGCCGCCGTTAACCTCAACCACCCCCTCATGTGCTACAGCAACCGCATCAACATCCTCGGCTCCTGCCACGGC CTCCTCTGCATCTGCAACGTCGCCGACGACATCGCCTTCTGGAACCCCTCCCTCCGCAAGCACCGCCTCCTCCCTTATCT CCCCACTCGCCGCACCCCGGAGCCGGAGAACACTATCTTCGCCGCCAGAGTCTACGGTTTCGGATTCGACCCCTTCGCCG CTGACTACAAGCTCGTCAGAATCTCCTACTTCGTCAACCTCCATGACCGCACCTTCGATTCGCAAGTTCGCCTCTACAGC TCCAGAACCAACGCGTGGAAAGCACTCCCCAGCATGCCGTACGCTCTCTGCTGCGCTCGCACCATGGGGGTTTTCGTCCA CCATGCTCTTCACTGGGTTGTGACCCGGAAGCTTCAACCGGATCAACCCGATTTGATTATCGCGTTTGATCTCAGCCTTG AAAGCTTCTCCGAGATGCCACTTCCTGAAACGGGTTACGGTGATGGTGATGATGATGGGGAATTTGAGATTGAGGTTGCG CTTTTCGAAGGGTGCTTATGCATGATTGTGAATTACCATAGTACTAGAGTTGATGTTTGGGTGATGAAGGAATATGGATT GAAAGAGAGTTGGTGTAAGCTTTTTAGTTTGATGGAATCACCTGATTTGAGATCATTGAAATGTTTGAGGCCTTTGGGTT ACTCTGTTGATGGGGTGAAGATTCTGCTAGAACACAATCGTAAGAAGCTTTGTTGGTATGACCTGAGAAGTAAACAAGTG AGTCATGTTAGGATTCCAGGAATGCCCAATTTGAATGAAGGGATGATTTGTGTCGGAAGCCTTGTGCCGCCGTCGTTACC GGTTGAAAATTGCCGGCGGCAACGCAAGCTGGGATGCGAAAATGCAAGGAAGACAAGGTACTTAAGGGACTACTACCTTG GTTTACCTGCATTTTTTCATGTATAAGATCAATTATCAATGGGCCCATCACATTTTATCCGTACTTAACTTTTTATTATA TGTCAATTTGAATCCTCCTCAATAGATAATTCAAGTATGCTTTATGTTACTATGAAATGTGAATGCTTTGTGTTCTGTTT ATGAGTTGACAAGGTCAACTCATGTTCTTCAGCCACCATTTTTGACCATTTGAAAAGTTGACTCTTAGACAAGGGAAGAA AGAATCAAGAATCTCAATATGGATCTCTTTTATTTTTCAGTTCACACTTATGTTATTAATTCGCAAGCTTATTTGGGAGT GTTGGCACTGTTCCTCCCAGCATTGACTTTTGTTTGACAACATCTCAATATTCAATTATGTGCATCTCATGATGAAATTT TTTGTTCTTTAGAAATTTGCTCACCATAAAATTTCTCTAATTTTATATCTAGTTCCTGTCAAGACTAGTGAGACCTTACC ATTTTGTGATCATGTTAAGCTTACTTCTTTGAGCCTCACGTTTTTACAGGGATGACTTCCTGTCACAAGGATTCAAATTG ACATTGTAAGAAAGAAAGAAAAAAGGGGTAAGATGGTATGTGGCTGAGACTGGATTGATGGTACCTTCTGGAACAAGGTA GTTAAAAGCCGGATTGATGATACCTTCTGAAGTTACATCTGGTGATGAAATTAGGCGCCTTGGTTCATGGGCAGTGTTGA GTTGATCAGGAACAGGGTTACTCTTTGTTAAGACGTTTTCCTTGTGCTGCCTTGGTTTTGCACGTTTTGTCTTGTTTATC GCCAGCAAAGAAGGATAAAGAAAGGCCCTGAGTGAAACAAAGGGCTCGAGTTCCCATTATCAAGATGAAGAAAACAGAAA TTGAAGAACAGATACAGGTTGTACATTGCTTCTTTACTTCCGCAATAGAAAGAAAATGGCCCTATGTCTTTTTGACTTTT TGTCGTGATGATGTGTTGAAAATTTTAATTTTCCCATGGTATTGTATATATGCGGATTGATATGGTTGTACCAGCACTAG AATACAAGGTTTACATTTGTCTATCATGCATGAACTGTATTTTTGGTTTGTTAATTCCTGATGAAGTGCTTGCATTATAA AGAAAAATATAAAATCTTAAGAAAGGCAAGAATGACTTGTTTTATGTAATAAACTAATAATATAACATAATACATAACAA AATAATGTCTTATGTGATAGTCATATGACATACATGTTCTATTGATAGTCGTAGCTAGCTTTTCTTTTCACTGTTTTGTG CGAGGGGAAAGGGAGGGGGAGGGGAGGCAGGGGTTGGGGTGGGAAGAGGAAGAGGAAGAGTTAAAAAGGGTAGGAGAAGG ACCAAAAGTGATTCATTGTAGAAATTTTGAAACGACAATCCTTTAACCCCATGAGGCCATGATGAAGATGAAAAAGGACG TGGCTGTCTAGGTTCGCAGCGGAGATTGTGGGTTGGTGACGAGGCATGTGAGAGAAGTTGATGAGGATGGAAATGGGGTG GGATTAATTAGAAAGAAGACAAGGATTAACGGGAAATAGGGTGGAATTGAGTATGTTGGATTTTGAGTGATGAGACTTAC GAATACTCATGAAGTTTCATTGAAAACACTTATGAGTTGAGTGATTGATTCATCAATAGTTTTAATCGAGAAATTAGGGA TTGAGGTTTAATTTTTGTTTTTTAATTCATAATTTTAATGTATTTTAATGATATTCCCTAATATGCACTATTTTTAGAGT GATGTAATTTTACACCACTTTTTTTAAG
CDS sequence (LotjaGi6g1v0286500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAGGAGATCCCGGTGGAGGTCATCGCCGACATCCTCTCCCGTCTTCCGGTGACCTCCCTCCTCCGATTCCGGTC AATCTCCAAGTCATGGCGCTCCCTCATCGACAGCAAACACTTCATGAAACTCCACCTCAACAACTCCCTTACCAATCCCA ATCCCAATCTCACCAATCTCATCCTCCGCCACAACACCGACCTCTACCGCGCCGATTTCCCCTCCATCGGTGCCGCCGTT AACCTCAACCACCCCCTCATGTGCTACAGCAACCGCATCAACATCCTCGGCTCCTGCCACGGCCTCCTCTGCATCTGCAA CGTCGCCGACGACATCGCCTTCTGGAACCCCTCCCTCCGCAAGCACCGCCTCCTCCCTTATCTCCCCACTCGCCGCACCC CGGAGCCGGAGAACACTATCTTCGCCGCCAGAGTCTACGGTTTCGGATTCGACCCCTTCGCCGCTGACTACAAGCTCGTC AGAATCTCCTACTTCGTCAACCTCCATGACCGCACCTTCGATTCGCAAGTTCGCCTCTACAGCTCCAGAACCAACGCGTG GAAAGCACTCCCCAGCATGCCGTACGCTCTCTGCTGCGCTCGCACCATGGGGGTTTTCGTCCACCATGCTCTTCACTGGG TTGTGACCCGGAAGCTTCAACCGGATCAACCCGATTTGATTATCGCGTTTGATCTCAGCCTTGAAAGCTTCTCCGAGATG CCACTTCCTGAAACGGGTTACGGTGATGGTGATGATGATGGGGAATTTGAGATTGAGGTTGCGCTTTTCGAAGGGTGCTT ATGCATGATTGTGAATTACCATAGTACTAGAGTTGATGTTTGGGTGATGAAGGAATATGGATTGAAAGAGAGTTGGTGTA AGCTTTTTAGTTTGATGGAATCACCTGATTTGAGATCATTGAAATGTTTGAGGCCTTTGGGTTACTCTGTTGATGGGGTG AAGATTCTGCTAGAACACAATCGTAAGAAGCTTTGTTGGTATGACCTGAGAAGTAAACAAGTGAGTCATGTTAGGATTCC AGGAATGCCCAATTTGAATGAAGGGATGATTTGTGTCGGAAGCCTTGTGCCGCCGTCGTTACCGGTTGAAAATTGCCGGC GGCAACGCAAGCTGGGATGCGAAAATGCAAGGAAGACAAGGTACTTAAGGGACTACTACCTTGGTTTACCTGCATTTTTT CATGTATAA
Protein sequence (LotjaGi6g1v0286500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEEIPVEVIADILSRLPVTSLLRFRSISKSWRSLIDSKHFMKLHLNNSLTNPNPNLTNLILRHNTDLYRADFPSIGAAV NLNHPLMCYSNRINILGSCHGLLCICNVADDIAFWNPSLRKHRLLPYLPTRRTPEPENTIFAARVYGFGFDPFAADYKLV RISYFVNLHDRTFDSQVRLYSSRTNAWKALPSMPYALCCARTMGVFVHHALHWVVTRKLQPDQPDLIIAFDLSLESFSEM PLPETGYGDGDDDGEFEIEVALFEGCLCMIVNYHSTRVDVWVMKEYGLKESWCKLFSLMESPDLRSLKCLRPLGYSVDGV KILLEHNRKKLCWYDLRSKQVSHVRIPGMPNLNEGMICVGSLVPPSLPVENCRRQRKLGCENARKTRYLRDYYLGLPAFF HV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 72 | 72 | 1.0E-7 | – | |
| ProSiteProfiles | 1 | 44 | 44 | 12.253 | ||
| SUPERFAMILY | 3 | 68 | 66 | 1.83E-12 | ||
| PANTHER | 4 | 358 | 355 | 1.6E-63 | – | |
| PANTHER | 4 | 358 | 355 | 1.6E-63 | – | |
| SMART | 5 | 45 | 41 | 7.6E-10 | ||
| Pfam | 5 | 41 | 37 | 8.5E-10 | ||
| TIGRFAM | 98 | 336 | 239 | 3.8E-27 | ||
| Pfam | 204 | 318 | 115 | 6.4E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0286500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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