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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0287500 |
| Transcript ID | LotjaGi6g1v0287500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alkaline ceramidase 3; TAIR: AT4G22330.1 Alkaline phytoceramidase (aPHC); Swiss-Prot: sp|Q9D099|ACER3_MOUSE Alkaline ceramidase 3; TrEMBL-Plants: tr|I3S1V4|I3S1V4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0287500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:60489845..60491595) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGAAACAATGGCTAGCTTCTGGGGTCCAATCACAACGACTAAAAAGTATTGTGAAATAAATTATGCACATTCATC TTATATAGCAGAGTTTTATAACACAATATCCAACATTCCGACCATTCTTCTGGCTCTCATTGGTCTTACAAATGCTCTTA GACAAAGGTTTGAGAAAAGATTTAGTGTTCTTCATGTATCAAATATGACACTTGCCATCGGAAGCATGTTGTACCATGCT ACACTGCAATATGTGTAAGTACTGATCTCTATCATCTTGTGCAGTTATTTATATTTCATATTAGCTTTTGGTTGGTTGTT TTTATAGTTTTTTGAGATGCTTTGCATTATACAATATGAGGTTGGTGTTCTATACAAAATTTTGTTGAACAATGGAAGAA TTCAAACTTAAGGTTATAAGGATAGATCACAATTAGCCTCATGTTGTCATAGTAAAATATTCAACCACAAATACTGGAGG GGGTTTTGGCATAGTAATATGGCCACACACAAAGAATATCATTGTAAAATGCTAGTTTAGTTGTTTTATGTATTTTTCAA CAATTAGCACTGGTTTCTCTAATCTGATAAAGATTAAATTTATATTCTATCTCACTCATCAACATTGTTTTATCTAATGC AAGTATATTAGGATTGAAGACGAGGCACTTATGGATTTGAATTAGGACGGTAATTGCGTCCCTTTTTTCCTTGTAGTTCT ATGTTTCCATATGTTAGCAACACTAGTTTTATATTTGCCACCGTGAAAGAGTTTTTTTCCCCACCGTGAAGGAGGTTACT ATGATATTTTGGCTTTAAATTACTGTATAATTATGTTTGGATCTTGATTGTTGAAAGATTTTGGTAGTTGGTCACCATCA TTAAGAATTGGAAACTGAATGCATATTATAATATTTTGGGACAGTAGCACACATGATTACTTTCTTAACTCAGTTTCAAG TTTATAACATTTTGTCAAGTTCTAAGTCACGTTGGAACTTTAAGATAGTGCACATGCTTGAGGGTTTTATGGAGGCCACA TTCAGGAGAATTGTATTTGTGCTTATAAATGCATGACCCTTTTCTTTTGTTGAAGGGGATGTGTGTCCTCTATAGGAATG TGTCATTTAATTATTAACTTTGTCAATTTCTTTTATCAATAGAATTAAGTTTGTAATCAAGTAGTACTGTTTGTTTTGGG TGACCACTTATTCTTCAGATGTTTCACTTTAATTTAGGCAACAACAGAGTGATGAAACTCCGATGGTGTGGGAAATTCTG TTGTACATATATATCCTATACTCTCCGGATTGGCATTATCGGAGAACAATGCCCATCTTCCTGTTTTTGTATGGTGTTGC TTTTGCCATCGGCCATTCGGTGGTCCAATTTGGTATTGGCTTCATAGTCCATTATGTCATTCTCTGTCTCCTTTGCATTC CAAGAATGTACAAGTATTACATTTATACTGAAGATGTGTCTGCCAAGCTGCTCGCAAAGCTATATGTAGCCACTCTCATA TTGGGAAGTTTGTTTTGGTTATTTGACCGTTTTATCTGCGAGGAGGTATCTGGTTGGGCAATTAATCCTCAAGGCCATGC TTTGTGGCATGTCTTCATGGGGTTCAATTCCTACTTTGCGAACACGTTCTTGATGTTTTGCCGTGCTCAACAACGTGGCT GGTCTCCGAAAGTTGTTCGTGTAATGGGTGTTTTCCCCTATGTGAAGATTCAAAAGCCAAAAAGAAAGTAG
CDS sequence (LotjaGi6g1v0287500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAAACAATGGCTAGCTTCTGGGGTCCAATCACAACGACTAAAAAGTATTGTGAAATAAATTATGCACATTCATC TTATATAGCAGAGTTTTATAACACAATATCCAACATTCCGACCATTCTTCTGGCTCTCATTGGTCTTACAAATGCTCTTA GACAAAGGTTTGAGAAAAGATTTAGTGTTCTTCATGTATCAAATATGACACTTGCCATCGGAAGCATGTTGTACCATGCT ACACTGCAATATGTGCAACAACAGAGTGATGAAACTCCGATGGTGTGGGAAATTCTGTTGTACATATATATCCTATACTC TCCGGATTGGCATTATCGGAGAACAATGCCCATCTTCCTGTTTTTGTATGGTGTTGCTTTTGCCATCGGCCATTCGGTGG TCCAATTTGGTATTGGCTTCATAGTCCATTATGTCATTCTCTGTCTCCTTTGCATTCCAAGAATGTACAAGTATTACATT TATACTGAAGATGTGTCTGCCAAGCTGCTCGCAAAGCTATATGTAGCCACTCTCATATTGGGAAGTTTGTTTTGGTTATT TGACCGTTTTATCTGCGAGGAGGTATCTGGTTGGGCAATTAATCCTCAAGGCCATGCTTTGTGGCATGTCTTCATGGGGT TCAATTCCTACTTTGCGAACACGTTCTTGATGTTTTGCCGTGCTCAACAACGTGGCTGGTCTCCGAAAGTTGTTCGTGTA ATGGGTGTTTTCCCCTATGTGAAGATTCAAAAGCCAAAAAGAAAGTAG
Protein sequence (LotjaGi6g1v0287500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAETMASFWGPITTTKKYCEINYAHSSYIAEFYNTISNIPTILLALIGLTNALRQRFEKRFSVLHVSNMTLAIGSMLYHA TLQYVQQQSDETPMVWEILLYIYILYSPDWHYRRTMPIFLFLYGVAFAIGHSVVQFGIGFIVHYVILCLLCIPRMYKYYI YTEDVSAKLLAKLYVATLILGSLFWLFDRFICEEVSGWAINPQGHALWHVFMGFNSYFANTFLMFCRAQQRGWSPKVVRV MGVFPYVKIQKPKRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 31 | 31 | - | – | |
| PANTHER | 1 | 254 | 254 | 2.4E-152 | – | |
| PANTHER | 1 | 254 | 254 | 2.4E-152 | – | |
| Pfam | 8 | 246 | 239 | 1.2E-53 | ||
| TMHMM | 28 | 50 | 23 | - | – | |
| Phobius | 32 | 49 | 18 | - | – | |
| Phobius | 50 | 60 | 11 | - | – | |
| Phobius | 61 | 81 | 21 | - | – | |
| TMHMM | 63 | 85 | 23 | - | – | |
| Phobius | 82 | 92 | 11 | - | – | |
| Phobius | 93 | 110 | 18 | - | – | |
| Phobius | 111 | 116 | 6 | - | – | |
| Phobius | 117 | 134 | 18 | - | – | |
| TMHMM | 118 | 152 | 35 | - | – | |
| Phobius | 135 | 139 | 5 | - | – | |
| Phobius | 140 | 157 | 18 | - | – | |
| Phobius | 158 | 168 | 11 | - | – | |
| TMHMM | 165 | 187 | 23 | - | – | |
| Phobius | 169 | 187 | 19 | - | – | |
| Phobius | 188 | 206 | 19 | - | – | |
| TMHMM | 207 | 226 | 20 | - | – | |
| Phobius | 207 | 226 | 20 | - | – | |
| Phobius | 227 | 255 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ceramide metabolic process | The chemical reactions and pathways involving ceramides, any N-acylated sphingoid. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amide. |
Expression pattern of LotjaGi6g1v0287500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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