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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0289100 |
Transcript ID | LotjaGi6g1v0289100.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | RING/U-box superfamily protein; TAIR: AT4G03965.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8LA32|LUL4_ARATH Probable E3 ubiquitin-protein ligase LUL4; TrEMBL-Plants: tr|Q2HTH7|Q2HTH7_MEDTR Zinc finger, RING-type; Found in the gene: LotjaGi6g1v0289100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:60641103..60642318) extracted from Lotus japonicus Gifu genome v1.2.
GAATTTGTACATTGTCCACGTCCATGGTTAGCTTTCCTAGCCCCAAGAAAGAGATTGATCAGTTTACTAATTTGAAGAGT ATAAAAAGAAGAGTCACACACACTCTGTAAAGAAACCTCATTTTCATTTCTTGTGCTATTTGTTCTATTTTGTCCTTATT TCTTTGCTTTCATTTCACACACAAAAGACAAGTAACGGAGCTTGCAATGCGTGCAGAGTGTCACTATTAAATAAACATAA ACCCCCACTCTGCATTTCGCAACAATTCCAATTCCTTTTCCCCTGTTATTCACTTTCACGAGATCTCTGTGCCACCACCG TCGCTAGTTACCATCATCATCATCATCCCTTCTTCAATGTCTCCCTCAACCTTCTTCTAACTCGCTAGCTAGCTCCACAG ATGAGTCAACTCGGTCTCATATTGCAGGAACCGCAGAGGGAGCAGAGAACCATTCTGGGCTTGCTAAGGGAGCAAATGGA CGGCGTAGATGGAGGCGCTCGGAGAAGGCGGAGCTTCAAGGAACGGTTAGGATTCATCGGCTTGGGTTGCTGTGGGGCCA ATTGGGGATTGCGTTCAACCTCGGTAACCGTCAGGCCTGAAGAACAACCGCAACGCTCTCCGGAACCGTTGCCGGGGCAC GACTGCGTGGGTCCGAGCTCGTCAGGAATGAATCTGGCGGCGGCGTTGGCGGCGGAACGACAGCTCCGGGGGCCACAGGG AGAACGGGAACGGGTTATGGGCGGGGGTAGGGCGCCGGGGACACCATGGAGGGTGTCGTTGATGAGGCTGCTGGAGGAGA CGGAGGTTGGGGACTCGGCGGCTGTGACGACGGAGAAAAGAGGAGGAGAAGAGGGGAATGATTCGGTGTGTTGCGTGTGC ATGGGAAGGAATAAAGGTGCGGCGTTCATACCATGCGGGCACACTTTTTGCAGGGTGTGTTCCCGGGAGCTGTGGCTGAA TCGAGGGTCTTGCCCACTTTGCAATCGTAGCATCATCGAGATTCTTGACATTTTCTAGAAATGAAATGAAAAATTCTTGG AATCAGAATGAGTGTGGTCTTTGTCTTCCCTTTTTCCTCCCTCTATTTCTATGAATGAGAGTATGCATGTATTTGTTAAC CCTCCAAATTTTGTTACCTCTCCAAATGTTTTTACTTTCTTTGTGTATTGTATATATATGCTATGAAATATTGAAATGAT ACAGAATGTTTATGGG
CDS sequence (LotjaGi6g1v0289100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTCAACTCGGTCTCATATTGCAGGAACCGCAGAGGGAGCAGAGAACCATTCTGGGCTTGCTAAGGGAGCAAATGGA CGGCGTAGATGGAGGCGCTCGGAGAAGGCGGAGCTTCAAGGAACGGTTAGGATTCATCGGCTTGGGTTGCTGTGGGGCCA ATTGGGGATTGCGTTCAACCTCGGTAACCGTCAGGCCTGAAGAACAACCGCAACGCTCTCCGGAACCGTTGCCGGGGCAC GACTGCGTGGGTCCGAGCTCGTCAGGAATGAATCTGGCGGCGGCGTTGGCGGCGGAACGACAGCTCCGGGGGCCACAGGG AGAACGGGAACGGGTTATGGGCGGGGGTAGGGCGCCGGGGACACCATGGAGGGTGTCGTTGATGAGGCTGCTGGAGGAGA CGGAGGTTGGGGACTCGGCGGCTGTGACGACGGAGAAAAGAGGAGGAGAAGAGGGGAATGATTCGGTGTGTTGCGTGTGC ATGGGAAGGAATAAAGGTGCGGCGTTCATACCATGCGGGCACACTTTTTGCAGGGTGTGTTCCCGGGAGCTGTGGCTGAA TCGAGGGTCTTGCCCACTTTGCAATCGTAGCATCATCGAGATTCTTGACATTTTCTAG
Protein sequence (LotjaGi6g1v0289100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQLGLILQEPQREQRTILGLLREQMDGVDGGARRRRSFKERLGFIGLGCCGANWGLRSTSVTVRPEEQPQRSPEPLPGH DCVGPSSSGMNLAAALAAERQLRGPQGERERVMGGGRAPGTPWRVSLMRLLEETEVGDSAAVTTEKRGGEEGNDSVCCVC MGRNKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSIIEILDIF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 205 | 205 | 1.9E-87 | – | |
PANTHER | 1 | 205 | 205 | 1.9E-87 | – | |
Gene3D | 134 | 205 | 72 | 1.0E-13 | ||
SUPERFAMILY | 151 | 202 | 52 | 1.97E-14 | – | |
Pfam | 154 | 200 | 47 | 1.7E-11 | – | |
CDD | 157 | 194 | 38 | 1.73971E-8 | – | |
SMART | 157 | 194 | 38 | 2.5E-6 | ||
ProSiteProfiles | 157 | 195 | 39 | 10.881 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0289100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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