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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0290000 |
| Transcript ID | LotjaGi6g1v0290000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal protein L4; TAIR: AT2G20060.1 Ribosomal protein L4/L1 family; Swiss-Prot: sp|B6IRQ7|RL4_RHOCS 50S ribosomal protein L4; TrEMBL-Plants: tr|I3S8B8|I3S8B8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0290000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:60719662..60724901) extracted from Lotus japonicus Gifu genome v1.2.
CCTGAAGTTGGGCCCAACACCAAAAGAAACAAAAAAAAAAACTGAGAAGAGGCTGGGTCCTATGACGCCTATTCTTGCTG AAACGTGAATTTGGGAAACCTCCCACGCCTATTCTTCGCCTGAGAAGAGAAGTGGTATGCAACCGCTCAGCCGCCGCCGC CGCACGTGAAGCTCCGGCGACCAACCTACATCATCGAACCTTGTGTGTTAGCTTTGGTAACTCGGTCTCTATCTCATTGC TTCATTTCCATATCGAATTTCTGATTTACGCTGAAACTGAAGTTGCTTTTGTGAATGAAATTGAGCACTTCATCTAATTT CAGTTCTCTTTTATAGATTGGTTGTTTCTTCAATTATGGCTGCTTTGATCTCCAAAAGACTGCTACGTTCTTCTGAATCC TTGCATTCACTAGGACGCCGCTGTTTTCATCAATCGCGTGGTAAGACATTTATGCAGCTTCATATCCATGTAATGTAACG ATGCTTTCTCCCTTTGATTTGATATTTATTTATTTTGCTGGCAGATATATGCAGCAGTTTATCTGGGGAGAGACGGTTTT CTGCACAACGTCCTGGCCTTCTCTTGGTACATTGCCATTGCATTTGATTTTTGTAACTTATTTTCAGGATTAGTGTTTAA TCAATGGAGCTCTCACTTGTGCTGGTTGTTTTCTGATGTGGTGTAGTTTATTTAATTGTAGGCCAGGTCAATGATCCAAC GGTTTTGTACTTCTGTTTCGGTTCCGGGGTACCACGAAGGTGCATTTCCGTCTGATTTATTGTCCAATAAGCCTCTCGCA ACATCTGAGCGTGATATAGGTATGAATTATATACTGGTGTTTCATAGTTTGATGCATTTTGATATTTCTAAAAGGAGAGC TGAGCTTATTTGCCTGCTAGGGGTGAATTTTTATCTGGCCTAGATGATTGAGATATGAGATATGTTTCAATGTCCATTTT GTGTCGTTAATGTATTTCATTATGATTTAGGGCTTTGTCAGGATCTTTTAATTCCAGTAACAAACTTTCATAATGAAGAC AAGGGCTTAATGGTTTTAGCTGGAGATGTTTTTGATGTGCCCATTCGCAAGGATATTATTCATCGTGTTGTTAGGTGGCA GCTTGCAAAACGACAACAGGTTGTGATTGCATAGTCTTTTCCTCTCTTAATGGTTTATTGGATATATAATTTGTCTAGTA GTATAGATCCACATTGTTGGTGATGAAAATTTCCCATGAGATTATTATGTGTTTCCTAATAGATATGGCCAACAGGGAAC TCACTCAACCAAAACCGTAAGTGAGGTCAGGGGGACTGGAAGAAAGATGTATAAACAAAAGGGATTGGGAAAAGCAAGGC ACGGATCACAGCGTGTGCATCTGGTAGTGTAACGTTCTGCTCATAATTGCCAGTCTATCTTTATTCATCCGCTACTGACA GTTTTCTGTTCTTTCCACCCTTATCGACACTGGAAATTAATAAATATAATTAATGATAACAGTTCAGGGGTGGTGCTGCC ATGCATGGCCCGAAGCCCCGTAGCCATGCTTTCAAACTCAATAAGAAGGTTCGCCGTCTGGGGCTGAAGATTGCTTTGTC AGCTCGTGCAGCAGAAGGAAAGGCAAGTCTCCGCCATCTCTGCCCTTGCCTTCTCCCTATAAACAATAACAACACATCTT TTCTACTTTATTCTGTCTGCTGCTTTTTTTTGCGTTCTTGCGTATACTCAATACGGTGATTATTTACCAGAAAAATAAAT AATAATTTGGTGTGACTTTTCACTTCTTAAAGATTTCATCTTTAGATTTTATAAATTTATTGGTTGAATTCTTATTTCTT TTAAGGGCTTCTTTGTTGTTGATATTTTTATTGATATCAAAATTTAAGACAGTTCAGGGAAGCCTACTGCATAGTCATTT TGCATTTAATATGTCATATGTATTTTCTCAGCCTCACTCAATCGTACTGTTTCTTTAATCCTTTTCTTGAGCTATAAAAA TAACCAGTGCAAGCTGTTCTTTTAAACTGCAAGCAACTTCTGAATACAATTGTGTTTGAGTAAAGGTTAACCGTACTTTA CGCAGCCCAGATCAAAATACATGCCCCTCTCTTAACTGAGCTATAAAGTTTTGTCATTAAAAGTGGGCGTGAAGGTCACA TGACTGCTTACTGCAGCAAAACTACCTATAGAAACTTCATAAGAAACAGGAAGATAACTCATGAAACACAAAGAAAAGGG CAATGCTTCTACATCAGCTGTCCTTGGACTGCTTCTGTCTTGTGACTTAGATTGTTCTTTGGGGCATGTATCTCTATCCT GATATTATAATATATTGTTTTCATTACCAAAATGTCTCATTGTCATTCTAATAGGGTTTATTACATTGTTCATTCTTGCA TTTGTTTTGTACATGAGGTGTTATTTGGATTTCTTTCTGATAGTAATAGCGATAGACCTGTTATAACAATGGTTTATCAG AGGAGGGGAAAGGAGAAGGTCGTCTGGTCATGCCATGTGGGCAGTTAGGATTTTCTATCTGATTTTTGGGGAAGAACAGT TGTTAGTGTCTGTTATAAATAGCTGGGCTTGTCTGTTAGTTAGTTAGACAGTTCTGGAGTAGGAAATTGTGGAGAGGGTT GGGACTCTCGAATTCCCCAACAACTTGTATCTGTTTACCTAATTTCCCAATTGGGATTAGGGTTCTATAGCAATAACAAT CAATTCAATATCTGCAGTTAGTTCTATCACTTTCATGCCATAATTTTTTTTTTTTTGTATTTATACAGCTTCTTGTCTTT GAGGATCTGGATGTTCTCACACATAAAACCAAGAACATTGTGAATTATTTCAAACAAATGGAGGACTCCAAGAAACTTCT GCTCGTAGATGGTGGCCCCATAAATGAAAAGCTAAAATTAGCTACACAAAATCTACATTATGTTAACGTCCTTCCCTCCA TTGTAAGTTTCTGTTTTATCCATGTTACTTCTAACATAGTTTGAATGGAAGTGATAATATCATTGTCATTGTGTTGTGTC GTGAGGGCCCCCCTCCCTGTCGTGGCATTGGAGGCGGCATAAATATATTTTTATACACCACATTAGACACTGCAACTTTC ACCCAAAACCTTTTGGCAATACGTGTACGGGTACTTTCACTTATATACTGTTCAACACTTTCTTTTTCATCAAACGTGTG AGATCTTTTTTATTTTTTACTCACACTTGAGTTCTCAACAATGTGAGTCATCACCATATTACCATCCTCACCCTTTGCAC TTTGCAGAAGGTTGTTAGTCAATCAGGATTGTAACCATTGGCTCAATCAAAAGACCAACTTTTTAGTAAAACCACTTATA ACAAGGTCTTTTTCAATGTTTTCTCCTGGTTGTTATCTAAACCCAACTATCTTCAATTTTATCGACTTTTGTCACTAGAG CCTCTATTGGTGGTCTTCTCATACAACCAAATTATTGTACGAGATTTTCCATCATCTTCTCCTTCATAGGGGCTACTCCT CCTTTCTTTCAGATAGTTGTCATTTTTAGTATTATATATTCACTCATCCACTACAGCATTGTCATCTTACATATGCTCAT TTGTTCGCTTCTATTGGCACTTCAATGCCTATCATCCACTATGATAAATCATTATTGATCTAATAATTATCCAATATAAT TTTATTTGTTGTTTGATAGTGTCAACTTGTGACTAGAAATGAGTGTAGCATGTCGATTTGTATGTGTGAGACATCTCCAT GGGCACTTTGCAAGATGGACATAAAGTAGTTAAATTGCACAGCTTATGATATGATGCAATATTCACAAAGTTTAACCTCC AAAACATCGCTAACTCTGTATCTTGGACTTTACCCCATGCCCTATTTCTGACTTCCATTTAGTTGAAAACCCATTGATTC CAAAGCTTCTTTGCAAATTTTACTCATTCCTTTGACTTATCAAGGACCATATCATCCACATAAGTATACATTGGCAGAGG CTTGTGGATGTGCATAATAATTAATAAGCACAACAATACTAAGGTGCAAACATAAAGTTGATGCTTGGTGCAAACACGTG GTTATAGGAAATATTCTTTTGCACATCCATTGAGTTTCCACACCAGTCCTTGTACCATCATGTATCCTTTATTCCTTGAT TAAGTAATACAATTATACAAACATTTTTCTATATCATTGATGACATGTGCTGGTCTTTTTTTGCTTTTTGTATGCCTGCA ATAGGGTTACAGCCTCCATTGTTAACTTCTTTGGCATCCAAGTTAGTTCAGTGACATGGTGTAACCTGCAAGCCTTATGA TGCTAATTGTTAAAAGTACCCAGTTTCTCCTAAAACCAGCACGCTTTTAAAGTATCGTTCAATCATTACTTAGGAAGTTT CATGATCACAAACCATATAATATAGAGATTTTCTTTCATGTATGATGCGTTTGACATGTTTTTGCAGGGCTTGAATGTCT ACAGTATTTTGCTGCACGACACTTTGGTGATGTCTCGAGATGCGGTGAACAAAATTGTTGAGCGTATGCATACTCCAATA AGTCGTTGAGGCAGTAACTATTTTTGTGCTCCACTTTATTTATTCAGAATCAGGAATAGTGTCCCATCTCCCCATTTCTG TAACATAAGTAATCCAATGATAATGTTTTTTGTATGACTGTTCTGTTAAAATTACTCAAGCTAGGAAAGTTCATACCATT TCTATGGCGTTCAAGACTGCAACTTAGGAATTTGATGGTTGAATTTTAATGCTCAAGCGGTTAGGTTTGTCAGTGTCCAA TGGTCAGATATAATTTTTACCGTTCTTTCAAATGCATAAGGATCTGAGAAACGTGTACTTCATTCTCGCCTCTGTCAATG AGTTTATCCTATATATAATCTCTGACTTCAAATGATTGAATTTGATTTGTTGGCATCAAATTAGGGATGGCCATTCAAAA GTTTTAGTTCTGCTCTACCCCTGCCTCCCTTTCTCACTTAGTAGTACTTCTTAGGGATACAGTTTGTTGGATAAGAATAT AGCTTAGAAGTCTCTTGGTGCCCCTGTTGTAGTTCATTTCCTACTCACTTGCAGTAACTATTAACATTCACATAATGGCG CTTCATAATAATTCAATGATTTCTTTTTTCACTCGACAGATATTAACATTATGTATCTCTTTTACGCTTTTAAGGATAAT AGTCTGGAAAGTTTACTCTTTCTCTCTATCTTTTCTGTAG
CDS sequence (LotjaGi6g1v0290000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCTTTGATCTCCAAAAGACTGCTACGTTCTTCTGAATCCTTGCATTCACTAGGACGCCGCTGTTTTCATCAATC GCGTGATATATGCAGCAGTTTATCTGGGGAGAGACGGTTTTCTGCACAACGTCCTGGCCTTCTCTTGGCCAGGTCAATGA TCCAACGGTTTTGTACTTCTGTTTCGGTTCCGGGGTACCACGAAGGTGCATTTCCGTCTGATTTATTGTCCAATAAGCCT CTCGCAACATCTGAGCGTGATATAGGGCTTTGTCAGGATCTTTTAATTCCAGTAACAAACTTTCATAATGAAGACAAGGG CTTAATGGTTTTAGCTGGAGATGTTTTTGATGTGCCCATTCGCAAGGATATTATTCATCGTGTTGTTAGGTGGCAGCTTG CAAAACGACAACAGGGAACTCACTCAACCAAAACCGTAAGTGAGGTCAGGGGGACTGGAAGAAAGATGTATAAACAAAAG GGATTGGGAAAAGCAAGGCACGGATCACAGCGTGTGCATCTGTTCAGGGGTGGTGCTGCCATGCATGGCCCGAAGCCCCG TAGCCATGCTTTCAAACTCAATAAGAAGGTTCGCCGTCTGGGGCTGAAGATTGCTTTGTCAGCTCGTGCAGCAGAAGGAA AGGCAAGTCTCCGCCATCTCTGCCCTTGCCTTCTCCCTATAAACAATAACAACACATCTTTTCTACTTTATTCTGTCTGC TGCTTTTTTTTGCGTTCTTGCGTATACTCAATACGGTGA
Protein sequence (LotjaGi6g1v0290000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAALISKRLLRSSESLHSLGRRCFHQSRDICSSLSGERRFSAQRPGLLLARSMIQRFCTSVSVPGYHEGAFPSDLLSNKP LATSERDIGLCQDLLIPVTNFHNEDKGLMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTVSEVRGTGRKMYKQK GLGKARHGSQRVHLFRGGAAMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKASLRHLCPCLLPINNNNTSFLLYSVC CFFLRSCVYSIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 233 | 233 | - | – | |
| PANTHER | 67 | 216 | 150 | 4.0E-74 | – | |
| PANTHER | 67 | 216 | 150 | 4.0E-74 | ||
| Gene3D | 91 | 217 | 127 | 1.9E-49 | ||
| SUPERFAMILY | 95 | 214 | 120 | 5.1E-46 | ||
| Pfam | 111 | 218 | 108 | 9.3E-42 | ||
| TIGRFAM | 111 | 214 | 104 | 7.2E-41 | ||
| Phobius | 234 | 251 | 18 | - | – | |
| Phobius | 252 | 252 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi6g1v0290000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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