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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0290900 |
| Transcript ID | LotjaGi6g1v0290900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Proline synthase co-transcribed bacterial; TAIR: AT1G11930.2 Putative pyridoxal phosphate-dependent enzyme, YBL036C type; Swiss-Prot: sp|Q3T0G5|PROSC_BOVIN Proline synthase co-transcribed bacterial homolog protein; TrEMBL-Plants: tr|I3T823|I3T823_MEDTR Proline synthetase associated protein; Found in the gene: LotjaGi6g1v0290900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:60797803..60801113) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAAACATATTAAACCCATTATTTTAACACAAAATGTGCTAATTAGTGGTGGGTAACAACTAATTAACACCCTTTCAA AAAAAAAAACTAATTAGGGGTGTTTAGTTCTTTTAATATATGTGCTGTGCTGACTGCGGAGGAGAGGAAGAAAATGGCAT CGTCAGCCACCACAGACGGCGGCCCATCGCCACCGCTGAAGGCGGTGCTGGAACGCGTCCAACAGGCAGCGGAGCGGTCA GGGAGGGATGTGAAGGAGATCCGGGTGGTGGCTGCGAGCAAGATGAAGCCAGTATCTGCCCTCCAACAGGTGTATGATGC CGGACATCGATGCTTCGGCGAGAACTACGTTCAGGAACTCATTGAGAAAGTTCCCCAGGTTGGTTTCTCGATCATTGAAT CAACTGCTTGCTTCCCTCATTCATTGTTCCTCACTCCTGAATGCTTCTTCTTCTATTTCATTCCTGATTAACCGCAGCTT CCAGATGATATCGAATGGCATTTCATTGGGCACTTGCAGAGTAATAAAGTTAAGCTTCTTGTTGGTATGTATTTATTCTT TATCCCTCTTTCTTTCAATGATTTCAACTGATTTGATCCCACTCTGTCTGTTCCAAATTTGTTTATCTTGAATCAGAATC ATCCATTGTATAATATTAGATCAGCTTGAATATTCCATCCATTGTGTTCCAAGAAAAATACCAACGAGTTTCAATTTTTG AGAGAGAAAGAGAGAGTGTGAGTGAGAGTGCTATGATTCATGTGTGTCACATGAATTGGTTTATTGTGTATTTGGATGTC AGTTGAGTGCGACATGAACAAACTTTAAGAAGTGTTTCATTCACTTTTTATCTTGGAGTGCATGCTAAGCGTTAGTGCCA ACAAATATCGAAACATATCATGATTAGTATAATTTAGTTAAGGAGATTGCTAGCTAGATTGATATAAAGTTATAAACTAA AGTTAGTTCGATTGAAATATTATCCCTTTCTGAAACTTGACCTTGAACATGAAGGTCTCAAGCTCATATATTAGTTGAGC TCAGTTTCAGTAGGGTTCATGAATGAACCATTGAAATATAGACACTAGCAGAAGTGAAGCCTCGTTTTTATTAGAAGCCA TGCTTCCAAACTTTATTTGTTACACAGCTTCCATTTTGTGGAGATAGGTTCATGATGACATTCAAAATTTTGGTAAATTT TGGATGATTTTGGCAAATTTTGGATGATTTTGGCTTGATTTTGTTCTTCATTTGATGTTTCTCAGCTGGTGTTCCCAACC TCGCTTATGTAGAGACTGTAGATGACGAGAAGGTAAATGTTTAATTTTTGTTTCTTCCCATAATTTTATTTGGCAGAGAA GGTAAATAGATTTTGCCTGTGTATTCAAGTGTATTGAGTACATATATAAGAATGTGAATTTTACAATATGATGATGACTT TCATCTAAACATTCTCGGATTTCTCTTGGAAGGCAGAATTGGCTATATTTATGATTTATGATGTTGAAAGTGGTCCTTAT TCCTTAGTAAGGATGCACCTCAGTGGTATAGATGGGCCTTACTTTAGTTGCACTCCACACTAACTAGAAGTACCTGCAGC GTTGCCATTTCGTCAATAAGTTTTGGGAGTTGGAAGTTGTGTCAAGTTCAACTTTGTCCCATTGAATGTTAATCTTTGAT ATCAGTTTCTGTGGAATTATGTTTATGCAATAAAAATTAATTTTGCAATGATCAACCAATGTATTTTAATTCAGTGCATG CATGATCTTAGTATCTTTTCATATTCTATTGCAAATGATGCAAATTTCATCTCGTTTTTGTTCTCTTTGACAATTTTATA ATTTTCCTGACAGAAAGCAAATCTTCTTGATCGTGCTGTAGAAAAAATTGGCAGGAACCCGTTGAAAGTTTTTGTTGAAG TGAATACAAGTGGAGAAACATGTAAGTTACACTTGAAAGATTGCCAACTAATTCAGTATCTTAACAAAGTTAAATTGGTT GTGTTTGAAATTTATTAACCAAAGTAATTTTATTTTCTGTGGTTTCTTATAGAAATATATGAAAACAGAGTTAAAATCAG AAGAAAATGTAGGTCCTTATTCTTTTATTGAAATTATGTTTAGCAAATAACTGATTCTAACATCATTTTTCTAGATACAA ATATGCAACCTATATTTATTAGAACGGTGTGCTTGATATAGGAGTTTGCTGGTTTACAATCTGTGCCCTACATCTTTGTT TTTCTTATCTGCCCCATGATAAACCATTGGTGGCATAATGGCATTGTCAATGTTTTCATTTTGTTCTCAATCTCAGGATT GACATTTGACTGTGCTATTTCCTTGCAGCAAAATTTGGTGTTGAGCCAGCTCTTTGTGTAGACCTTTTAAAACATATTGT TACAAAATGCCCAAACCTTGAGTTCTGTGGCCTGATGACAATTGGCATGTTGGACTATTCATCCACCCCTGAAAATTTTA AGGTAGAAACTACACATTTGGGATATGATGTATTAGTTTTTCAGGGAACTTCTTTTCTAGTCTTATGATTAATTCTTCAA ACTAAATTTTCTTTTGTACTCTCCAGACATTGTCCAATTGTAGAAGTGAAGCTTGTACGGCACTTGGAATACCAGAAGAG AAATGTGAGCTGTCAATGGGCATGACTGCAGATTTTGAGCGAGCTGTAAGGAATCCTTTTTCTTAGAAAACATGGATTGT GGTGTGTCAATGGTCTAAGGGTAACTATTATATCTTCATGATAGTTTTTGACCAGCTAACTCAAATTTTGCAGATCGAGA TGGGAAGTACAACTGTTAGGGTTGGAACTGCCATATTTGGACCCAGAGATTATCCACTGAGAGAAGAGGAGTAGCTTTCC TCATTTTGTATCTTGTTTGTGATTGTATTATGGTGCTTAGATTCACATGTCAAAGCCATAGAGCAGCATGAACAGATCAT TTAAACTGGAAATAAATATTCATGAGCTCCAGAGAGAGCTTTGTATTCAGAATAAATGAATAATCTTCGAGACTGGACGA TTGATGCATTGTTGCTTTCTGTCAAATGTAAAATCAAACGTATTCAATTGAAGCCTAACCAGTATTATCTTTGGAAAGTT CTAACCTTGTAGCACATCAGGGCTTGGCTTGTCTTTCTATTTTACATGCATGATGTGGTATGTCAATGGTCTAAGGGCAA TGGGTATTTTTCCAATACACTTTTTTTTTGTCAATCCAATACACTTATAATGTGTAACATTACAAGAAAAAACATTGATA GAGGCATAGAGCCCAAGAATTGGTTGGGTGG
CDS sequence (LotjaGi6g1v0290900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCGTCAGCCACCACAGACGGCGGCCCATCGCCACCGCTGAAGGCGGTGCTGGAACGCGTCCAACAGGCAGCGGA GCGGTCAGGGAGGGATGTGAAGGAGATCCGGGTGGTGGCTGCGAGCAAGATGAAGCCAGTATCTGCCCTCCAACAGGTGT ATGATGCCGGACATCGATGCTTCGGCGAGAACTACGTTCAGGAACTCATTGAGAAAGTTCCCCAGCTTCCAGATGATATC GAATGGCATTTCATTGGGCACTTGCAGAGTAATAAAGTTAAGCTTCTTGTTGCTGGTGTTCCCAACCTCGCTTATGTAGA GACTGTAGATGACGAGAAGAAAGCAAATCTTCTTGATCGTGCTGTAGAAAAAATTGGCAGGAACCCGTTGAAAGTTTTTG TTGAAGTGAATACAAGTGGAGAAACATCAAAATTTGGTGTTGAGCCAGCTCTTTGTGTAGACCTTTTAAAACATATTGTT ACAAAATGCCCAAACCTTGAGTTCTGTGGCCTGATGACAATTGGCATGTTGGACTATTCATCCACCCCTGAAAATTTTAA GACATTGTCCAATTGTAGAAGTGAAGCTTGTACGGCACTTGGAATACCAGAAGAGAAATGTGAGCTGTCAATGGGCATGA CTGCAGATTTTGAGCGAGCTATCGAGATGGGAAGTACAACTGTTAGGGTTGGAACTGCCATATTTGGACCCAGAGATTAT CCACTGAGAGAAGAGGAGTAG
Protein sequence (LotjaGi6g1v0290900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSATTDGGPSPPLKAVLERVQQAAERSGRDVKEIRVVAASKMKPVSALQQVYDAGHRCFGENYVQELIEKVPQLPDDI EWHFIGHLQSNKVKLLVAGVPNLAYVETVDDEKKANLLDRAVEKIGRNPLKVFVEVNTSGETSKFGVEPALCVDLLKHIV TKCPNLEFCGLMTIGMLDYSSTPENFKTLSNCRSEACTALGIPEEKCELSMGMTADFERAIEMGSTTVRVGTAIFGPRDY PLREEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 3 | 244 | 242 | 4.5E-75 | ||
| Gene3D | 12 | 243 | 232 | 2.3E-88 | ||
| Hamap | 13 | 237 | 225 | 30.099 | ||
| PANTHER | 14 | 243 | 230 | 1.9E-115 | ||
| SUPERFAMILY | 14 | 236 | 223 | 3.2E-72 | ||
| PANTHER | 14 | 243 | 230 | 1.9E-115 | – | |
| Pfam | 15 | 238 | 224 | 6.9E-23 | ||
| CDD | 15 | 236 | 222 | 9.37695E-130 | – | |
| TIGRFAM | 17 | 238 | 222 | 1.2E-58 | ||
| ProSitePatterns | 82 | 96 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi6g1v0290900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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