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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0293200 |
| Transcript ID | LotjaGi6g1v0293200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aminomethyltransferase; TAIR: AT1G11860.1 Glycine cleavage T-protein family; Swiss-Prot: sp|P49364|GCST_PEA Aminomethyltransferase, mitochondrial; TrEMBL-Plants: tr|I3SSE7|I3SSE7_LOTJA Aminomethyltransferase; Found in the gene: LotjaGi6g1v0293200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61110072..61111686) extracted from Lotus japonicus Gifu genome v1.2.
ATGACTTAACATTTCAACTTTTTTTCTTCCGCAGATAACAGAAAATGAGGGGGGGCTTGTGGCAACTTGGGCAATCAATC ACCCGCCGTCTCACCCAGGGTGATAAGAAGGCTGTTGCTTGTCGGTATTTTGCGTCAGAGGCTGAGCTGAAAAAGACAGC TCTCTATGACTTCCATGTTGTTAATGGAGGGAAGATGGTGCCATTTGCTGGATGGAGCATGCCAATCCAATACAAGGACT CAATCATGGACTCAACCCTAAACTGTAGGGAGAACGGTAGCCTGTTTGATGTTTCCCATATGTGTGGGCTGAGCCTTAAG GGAAAGGATGCTGTTCCATTCCTTGAAAAGCTTGTCATTGCTGATGTTGCTTCACTTGCCCCGGGAACTGGATCATTGAC TGTTTTCACAAATGAAAAGGGAGGGGCAATTGATGATTCCGTGATTACCAAGGTGGCGGATGATCACATATACTTGGTTG TGAATGCTGGTTGCAGGGACAAAGATCTGGCTCACATCGAGGAGCATATGAAGGCATTCAAGGCAAAAGGTGGTGATGTG TCATGGCACATCCATGATGAGAGATCTCTTCTTGCCCTGCAGGTCATTTGTCACACTAGGGTCTTTTAAATTGATGAACC GTTCTTCATAGCATCATTTAATAAAGGACTCTTATTTCTCTGAAACAGGGTCCTCTTGCTGGTCCTGTTCTTCAACACCT GACAAAAGATGATCTGAGCAAGTTCTACTTTGGGGAGTTCCGCGTGTTGGACATCAATGGTTCCCAGTGCTTTCTCACGC GAACAGGGTATGTTTTCTTTCATTAGCAACTTATTTGAGTTGTAAGACAATAGTAATGCTACCTGAAATTTCATCTTAAG CCACTTTTGCTATTGATTTTAAAAATCTTTCATTTCGTTCTGAAATGCAGTTATGTCCTGGCTGATCACAGAGTACATTT GATAATTTCACTTTGTCTTTTTCTTCTGTTAGCTAATTCTTTCACTAGGACACATTGCTACATCCTACGGCAGTACTATG CATAATAGCACTCTTGACTAACTTTCAGGTATACCGGGGAAGATGGATTTGAAATCTCAGTTCCTTCAGAGAATGCATTG GATCTTACCAAGGCAATTCTGGAAAAATCTGAAGGGAAGATAAGATTGACAGGATTGGGTGCTCGAGACAGTCTACGACT TGAAGCTGGTTTGTGTTTATATGGCAATGACATGGAACAGCACATTACACCTGTTGAGGCAGGACTCACATGGGCCATAG GAAAGAGAAGGAGAGCAGAAGGGGGGTTTCTTGGAGCTGAAGTTATACTGAAACAGCTTGCTGAAGGTCCCAAGATCAGG CGTGTCGGTTTCTTTTCTTCCGGCCCACCTCCTAGAAGCCACAGTGAGGTTCAAGATGAAGGAGGAAACAACATTGGTGA AGTCACAAGTGGTGGATTCAGCCCTTGCCTTAAGAAGAACATAGCCATGGGATATGTGAAATCAGGACTGCACAAGGCAG GCACCAAAGTGAAGATTATTATTCGAGGAAAAGCCAATGAAGGGGTTGTTACAAAAATGCCTTTTGTACCAACAAAATAC TATAAGCCGACCTGA
CDS sequence (LotjaGi6g1v0293200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGGGGGGCTTGTGGCAACTTGGGCAATCAATCACCCGCCGTCTCACCCAGGGTGATAAGAAGGCTGTTGCTTGTCG GTATTTTGCGTCAGAGGCTGAGCTGAAAAAGACAGCTCTCTATGACTTCCATGTTGTTAATGGAGGGAAGATGGTGCCAT TTGCTGGATGGAGCATGCCAATCCAATACAAGGACTCAATCATGGACTCAACCCTAAACTGTAGGGAGAACGGTAGCCTG TTTGATGTTTCCCATATGTGTGGGCTGAGCCTTAAGGGAAAGGATGCTGTTCCATTCCTTGAAAAGCTTGTCATTGCTGA TGTTGCTTCACTTGCCCCGGGAACTGGATCATTGACTGTTTTCACAAATGAAAAGGGAGGGGCAATTGATGATTCCGTGA TTACCAAGGTGGCGGATGATCACATATACTTGGTTGTGAATGCTGGTTGCAGGGACAAAGATCTGGCTCACATCGAGGAG CATATGAAGGCATTCAAGGCAAAAGGTGGTGATGTGTCATGGCACATCCATGATGAGAGATCTCTTCTTGCCCTGCAGGG TCCTCTTGCTGGTCCTGTTCTTCAACACCTGACAAAAGATGATCTGAGCAAGTTCTACTTTGGGGAGTTCCGCGTGTTGG ACATCAATGGTTCCCAGTGCTTTCTCACGCGAACAGGGTATACCGGGGAAGATGGATTTGAAATCTCAGTTCCTTCAGAG AATGCATTGGATCTTACCAAGGCAATTCTGGAAAAATCTGAAGGGAAGATAAGATTGACAGGATTGGGTGCTCGAGACAG TCTACGACTTGAAGCTGGTTTGTGTTTATATGGCAATGACATGGAACAGCACATTACACCTGTTGAGGCAGGACTCACAT GGGCCATAGGAAAGAGAAGGAGAGCAGAAGGGGGGTTTCTTGGAGCTGAAGTTATACTGAAACAGCTTGCTGAAGGTCCC AAGATCAGGCGTGTCGGTTTCTTTTCTTCCGGCCCACCTCCTAGAAGCCACAGTGAGGTTCAAGATGAAGGAGGAAACAA CATTGGTGAAGTCACAAGTGGTGGATTCAGCCCTTGCCTTAAGAAGAACATAGCCATGGGATATGTGAAATCAGGACTGC ACAAGGCAGGCACCAAAGTGAAGATTATTATTCGAGGAAAAGCCAATGAAGGGGTTGTTACAAAAATGCCTTTTGTACCA ACAAAATACTATAAGCCGACCTGA
Protein sequence (LotjaGi6g1v0293200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRGGLWQLGQSITRRLTQGDKKAVACRYFASEAELKKTALYDFHVVNGGKMVPFAGWSMPIQYKDSIMDSTLNCRENGSL FDVSHMCGLSLKGKDAVPFLEKLVIADVASLAPGTGSLTVFTNEKGGAIDDSVITKVADDHIYLVVNAGCRDKDLAHIEE HMKAFKAKGGDVSWHIHDERSLLALQGPLAGPVLQHLTKDDLSKFYFGEFRVLDINGSQCFLTRTGYTGEDGFEISVPSE NALDLTKAILEKSEGKIRLTGLGARDSLRLEAGLCLYGNDMEQHITPVEAGLTWAIGKRRRAEGGFLGAEVILKQLAEGP KIRRVGFFSSGPPPRSHSEVQDEGGNNIGEVTSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIIIRGKANEGVVTKMPFVP TKYYKPT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 406 | 402 | 1.9E-175 | – | |
| PANTHER | 5 | 406 | 402 | 1.9E-175 | – | |
| PIRSF | 10 | 407 | 398 | 3.0E-85 | ||
| SUPERFAMILY | 34 | 319 | 286 | 5.49E-87 | – | |
| TIGRFAM | 35 | 400 | 366 | 4.5E-107 | ||
| Gene3D | 36 | 272 | 237 | 2.2E-88 | ||
| Pfam | 40 | 295 | 256 | 1.9E-88 | ||
| Gene3D | 86 | 176 | 91 | 2.2E-88 | – | |
| Gene3D | 273 | 317 | 45 | 1.4E-23 | – | |
| SUPERFAMILY | 312 | 405 | 94 | 5.72E-25 | ||
| Gene3D | 321 | 395 | 75 | 4.4E-28 | – | |
| Pfam | 324 | 399 | 76 | 1.7E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Aminomethyltransferase activity | Catalysis of the reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Glycine catabolic process | The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid. |
Expression pattern of LotjaGi6g1v0293200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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