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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0294000 |
| Transcript ID | LotjaGi6g1v0294000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase 1; TAIR: AT1G11820.2 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|O65399|E131_ARATH Glucan endo-1,3-beta-glucosidase 1; TrEMBL-Plants: tr|K7MJE4|K7MJE4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0294000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61180550..61184109) extracted from Lotus japonicus Gifu genome v1.2.
AGTAGGGCCATTGCCAGCTGCAAACAATTTGGATTGTACAATTAATCCACTGTTTTTCTATACTTGGCATTCATTTCTCT TGGGAAAAACCAGCAGATGCCGGTTCACTTTCACCAGAACACCAAGAAGGATAATTTAGACAATTTAGCAGAGTAACAAA TCTGTTGAGCTTAACCAATGAGAGGCATAACACTAGAAATCAAGAAGGATCCAGCAAACTCCACTGAAGCTTCCTCATGG ATCCTTCTTCCCACCCACTTATGTATAGCCATTAGTACCATCAAGCCAACTTGATTCCAATTTCAGACCCAAAACCAGAA CACAAGACAATGCAAGGATATGGAACTGAAGCCCCACAACCACAGTATGAAGAATTGAACTGCAAGTTGCACAACCAACC AAAACCAAAACCAAAACCAAAACCAACCTCCCCTCTCTCCAAATCCAATGACAAAATCTAATCTCAACAACCTCACAATC TTACTCTTACTCCTCTTCACCTTCACCTCTCAAATCACCATTTCAGCACAAAACAACAACAACCAACAAGACCAGAGACA ACCCTTCGTCGGAGTCAACATTGGCACCGACGTTTCAAATCTCTTACCACCATCACAACTAGTATCCTTCCTCAACCACC AGAAAATCACTCACATCCGTCTCTACGATGCCAACCCCGACATCCTCGGAGCATTATCCGGCACCGACATCCACGTCACC ATCAGTGTCCCCAACAACCAGCTCATCGCAATTGGCTCATCAAACTCCACCGCTTCTGCCTGGATCCGCCGCAACGTCGC CGCTTTCTACCCCAAAACCCTCATCACCGGAATCTCCGTCGGCGACGAGGTTCTAACCACCGTCCCCTCCTCCGCTCCTC TCCTCCTCCCCGCCCTTAAATCCCTCTACTCCGCCCTCGTCGCTTCCAACCTTCACAACAAAATCACAATCTCAACTCCT CATTCCGCTTCCATCATCCTCGACCCTTTTCCTCCTTCTCAGGCTTTCTTCAACCAGAGCCTCTCTTCCATTCTCCTCCC TCTTCTCCAGTTCCATTCGCAAACCGGTTCGCCATTGATGCTCAACCTCTACCCTTACTATGTCTTCATGGAGAACAAGC GTGAGGTTCCTCTCGAAAGCACGCTGTTCAAGCCTCTTGCCAAGGAAATGGTGGACCCCAACACGCTGCTTCACTACACC AATGTTCTTGATGCCATGATTGATGCTGCTTATTTCTCCATGAAGAATCTCAATGTTACTGATGTTGTGGTGCTTGTCAC TGAAACTGGTTGGCCTAGTAAAGGGGATTCGAATGAGCCTTACGCGACGAAGGAGAACGCGGATACTTACAATTCCAACT TGATTAAGCATGTTTTCGATCGTAACGGAACCCCTTTGCATCCTGAAACAACTTCCAGTGTGTATGTGTATGAATTGTTC AATGAGGACTTGAGGTCAAGGCCAGTGAGTGAGGCTAATTGGGGACTCTTTTATGGGAATACTACGCCTGCGTATTTGCT TAGAGTTTCTGGGACTGGGAGTTTTCTTGCCAGTGATACTACTAATCAGACTTATTGCATTGCTATGGATGGTGTTGATT CGAAGACTTTGCAGACGGCGTTGGATTGGGTGTGTGGACCGGGGCGAGCGAATTGTTCTGAGATTCAACCTGGAGAGAGT TGCTATCAGCCTAATAATGTGAAGAATCATGCTTCTTATGCGTTTGATAGCTACTACCAGAATCAAGGCAAATCATCCGA GTCTTGTGACTTCAAAGGAGCAGCTATGATCACTACTAATGATCCTAGTAAGTGATTTTTTGACTCTTCTTGGTTAATTT TTATGTAGACCTTTTGGTGGATCTTGTTCTTTCTGGAAATGAATTCATTTACATTGTAAACTTAATCCTGGATTATATGT TTTGACAACTTTTTGTTGGGGAATTTGGGATTTTAACATGATGTTAGACTTGGCTTTGCTCTTGAGGGGAAGGGTTTCCT GATTAGATTTCTTTATGATAAAGGAAGAATTGACAGTGAAAGAAAAAGAAAAAGGCTTGTGCTCAATAAGGATATCTACT TTTGATTTGGAAAAAAGGGAATATTGGAACCGTGGCTAGGCAATGATTCTGAAATTAAATGTGTTTGTGTGTGGCACCCA CATATTGCAAAGGCACTTTGACAGTTTGTCTTGACTCTATTTAAATTTCAAAAATTGAAATTTGAAGTGAAAAGTGGGGC TGGAGTTCACAGTGCCTTATTGAATAGGGGAACCATGAACCACTCAATGTGACTTGGCAGGGATGCTGGTTTGTCTGAAG GGTTCTGTTTCATTTCATAATGTATTCACCTGCTCAGTGTTTTTTTTTTTCAAACCCAAGTATGTCAATCAAGTATATGC ATGTACACTTTCGCTATTAGCATGTTTGGATCAACTTTTTTTCAAAATTCTGAAAACTTGAACATACACATAGAAATTTC TCTCCAAATTGATTCTGGCTTAATAATCAATTGTTAGAAGGATTTCCAAACGTGCACAATATCTATTTAGATATTACATT TGTTTTAAAGAGCTCCCCAATTTTGTATGTCTTTCCCTTTATTGTCTCTTCTAGGTCTAACAATTGTGATTAATATTTTC TTTGCCCTTTCTTGTTGGGAATACCTTTTCAGGTCATGGCAGCTGTATATTTCCTGGAAGGTAATAGCTTTTGTCTGCTG AGCTGCCCTGGACTTATTTTGTATTTTAATTTGACTACTTGTTTCTTTACCTAAGTGGCTAAATGTGTTTTGCATTTTGA TGTAATGTAGTAAGGAATTAAGCAGCAAGACAAAGGAAAATGTGAACTCTACTCAATCAAGCAATGCAGGGGAGAATTTA AGGCTCAGAACCTTTAGCGGCAAGAAAATGAGTGAAATCAACTACATTTTGCACATTTACTTGGTTGCTGCATTGCCCAC TTTGTTGCTATTCCTTTTGTGAGGTGCAAATAATACCTTTTTTGTTCTGGGTGGGGGTTGAGAGCGTTTGTATGATTGAT TGTTTTGATAATTCTTTTAGCAGAGGATAAAAGAAAAGGAGGTTCTGGATGACCTACTTCTCCAAACTTAGTGCTTAAGA TAGATGCTTGCTTTTGAGAAAGTAGGTGTGTAAAATTTTCACATGGAGGGTTCTTGTAATTAAATATGTTAATTAGTGTA GGATATGAACATCATGGAATCGACTTTCTTATGTGAATTTCTTACATGCGAAGACAGAGAGATACACACAAAAGATAAAT AAGGTCTCACAAATTTCAGATGGCCTTTGTGTCTATTTCTTTCTTAACATGGCTTATCATGTGAAAAATTTACATAAGTA GATCTATTTTAAAAAAAATGATGTATATTATGACATGTAGTTGGATGATTATAAGTATTTTAATACACACATTTGACTCC TCTAATGCTGATATTTTCGTCCCAAGATTCTGGGCCTTCTTGAAATTGTTAAAGTAATTGTTTTGTATGCTAACATCAAA TGCTTAGACATTTTATGGAGTAGGACTAAATACGTTCATG
CDS sequence (LotjaGi6g1v0294000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAAAATCTAATCTCAACAACCTCACAATCTTACTCTTACTCCTCTTCACCTTCACCTCTCAAATCACCATTTCAGC ACAAAACAACAACAACCAACAAGACCAGAGACAACCCTTCGTCGGAGTCAACATTGGCACCGACGTTTCAAATCTCTTAC CACCATCACAACTAGTATCCTTCCTCAACCACCAGAAAATCACTCACATCCGTCTCTACGATGCCAACCCCGACATCCTC GGAGCATTATCCGGCACCGACATCCACGTCACCATCAGTGTCCCCAACAACCAGCTCATCGCAATTGGCTCATCAAACTC CACCGCTTCTGCCTGGATCCGCCGCAACGTCGCCGCTTTCTACCCCAAAACCCTCATCACCGGAATCTCCGTCGGCGACG AGGTTCTAACCACCGTCCCCTCCTCCGCTCCTCTCCTCCTCCCCGCCCTTAAATCCCTCTACTCCGCCCTCGTCGCTTCC AACCTTCACAACAAAATCACAATCTCAACTCCTCATTCCGCTTCCATCATCCTCGACCCTTTTCCTCCTTCTCAGGCTTT CTTCAACCAGAGCCTCTCTTCCATTCTCCTCCCTCTTCTCCAGTTCCATTCGCAAACCGGTTCGCCATTGATGCTCAACC TCTACCCTTACTATGTCTTCATGGAGAACAAGCGTGAGGTTCCTCTCGAAAGCACGCTGTTCAAGCCTCTTGCCAAGGAA ATGGTGGACCCCAACACGCTGCTTCACTACACCAATGTTCTTGATGCCATGATTGATGCTGCTTATTTCTCCATGAAGAA TCTCAATGTTACTGATGTTGTGGTGCTTGTCACTGAAACTGGTTGGCCTAGTAAAGGGGATTCGAATGAGCCTTACGCGA CGAAGGAGAACGCGGATACTTACAATTCCAACTTGATTAAGCATGTTTTCGATCGTAACGGAACCCCTTTGCATCCTGAA ACAACTTCCAGTGTGTATGTGTATGAATTGTTCAATGAGGACTTGAGGTCAAGGCCAGTGAGTGAGGCTAATTGGGGACT CTTTTATGGGAATACTACGCCTGCGTATTTGCTTAGAGTTTCTGGGACTGGGAGTTTTCTTGCCAGTGATACTACTAATC AGACTTATTGCATTGCTATGGATGGTGTTGATTCGAAGACTTTGCAGACGGCGTTGGATTGGGTGTGTGGACCGGGGCGA GCGAATTGTTCTGAGATTCAACCTGGAGAGAGTTGCTATCAGCCTAATAATGTGAAGAATCATGCTTCTTATGCGTTTGA TAGCTACTACCAGAATCAAGGCAAATCATCCGAGTCTTGTGACTTCAAAGGAGCAGCTATGATCACTACTAATGATCCTA GTCATGGCAGCTGTATATTTCCTGGAAGTAAGGAATTAAGCAGCAAGACAAAGGAAAATGTGAACTCTACTCAATCAAGC AATGCAGGGGAGAATTTAAGGCTCAGAACCTTTAGCGGCAAGAAAATGAGTGAAATCAACTACATTTTGCACATTTACTT GGTTGCTGCATTGCCCACTTTGTTGCTATTCCTTTTGTGA
Protein sequence (LotjaGi6g1v0294000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTKSNLNNLTILLLLLFTFTSQITISAQNNNNQQDQRQPFVGVNIGTDVSNLLPPSQLVSFLNHQKITHIRLYDANPDIL GALSGTDIHVTISVPNNQLIAIGSSNSTASAWIRRNVAAFYPKTLITGISVGDEVLTTVPSSAPLLLPALKSLYSALVAS NLHNKITISTPHSASIILDPFPPSQAFFNQSLSSILLPLLQFHSQTGSPLMLNLYPYYVFMENKREVPLESTLFKPLAKE MVDPNTLLHYTNVLDAMIDAAYFSMKNLNVTDVVVLVTETGWPSKGDSNEPYATKENADTYNSNLIKHVFDRNGTPLHPE TTSSVYVYELFNEDLRSRPVSEANWGLFYGNTTPAYLLRVSGTGSFLASDTTNQTYCIAMDGVDSKTLQTALDWVCGPGR ANCSEIQPGESCYQPNNVKNHASYAFDSYYQNQGKSSESCDFKGAAMITTNDPSHGSCIFPGSKELSSKTKENVNSTQSS NAGENLRLRTFSGKKMSEINYILHIYLVAALPTLLLFLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 8 | 8 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 9 | 20 | 12 | - | – | |
| PANTHER | 12 | 479 | 468 | 1.4E-250 | – | |
| PANTHER | 12 | 479 | 468 | 1.4E-250 | – | |
| Phobius | 21 | 26 | 6 | - | – | |
| Phobius | 27 | 500 | 474 | - | – | |
| Pfam | 41 | 358 | 318 | 1.7E-71 | ||
| SUPERFAMILY | 41 | 358 | 318 | 1.85E-76 | ||
| Gene3D | 41 | 359 | 319 | 2.6E-110 | – | |
| ProSitePatterns | 273 | 286 | 14 | - | ||
| Gene3D | 371 | 479 | 109 | 2.6E-5 | – | |
| SMART | 375 | 460 | 86 | 2.9E-50 | ||
| Pfam | 376 | 447 | 72 | 5.8E-22 | ||
| Phobius | 501 | 518 | 18 | - | – | |
| TMHMM | 501 | 518 | 18 | - | – | |
| Phobius | 519 | 519 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi6g1v0294000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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