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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0296200 |
| Transcript ID | LotjaGi6g1v0296200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pseudouridine synthase family protein; TAIR: AT4G21770.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q9SVS0|PUS6_ARATH RNA pseudouridine synthase 6, chloroplastic; TrEMBL-Plants: tr|I1M124|I1M124_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0296200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61390038..61395765) extracted from Lotus japonicus Gifu genome v1.2.
TCGGAGTCGAAGAAGATAGAGAATGGCTTCGGTGGCGGTGGCGTCAATGTTGTTCTCCGGCGGCTGCCGGAGCTTCACCG CGCCTGCTGTTTCGCGCGCACTTCGCAATTCGCTTACCAAGCACCTCAACAAGCACGCGTTGAGTTGGCGCCATCGGAGC TCACATAGTAGTAGTAACGCTGCACTCGCCGGAGAAACTGAATCCTCCACAACCGACGCCGGAAACTTACCGTCCTCCTC CTCTCCTTATCACAGGTACCTTCACCATTAACAAGATTACAGCTAATTTATTTCTCACAACCTCCACTTTTTGCGTGTTA CTAAGAGGCTCCGTTTCGTTTGAAGCTACCCGAAGTATGATCGGTTGCTTCCATGTCCACTGCACAAATCTCCACCAAGA ATCGAACACTTGGTTGTATCAGAAGGAGGACCTGTCTTGGAGTATATTTGCAGGTCACTGGATCTTCATCCTCTGTAAGT TAATCAATATCATACTGTTCTTGCATTATCTTCACACAAATTGGATTATCATGATTAGTTTCATTGTGTGAAGGTTTGTT GAAGATCTGATTCAATTTGGAGCTGTATACTATGCTCTTGTTTGCCCTCACCCTCCTCCTAATGCTACACCAGAGCAACT GAGGATATTCAAAGAAGTAACTGAGCCTTCCGTTTTGCGAAAAAGACCTTCCATTAAGGGCAAAACTTTTCGAGAGGCGC AGAAAACGTTCCGTATAACTCACGCCAATCAATTTGTTGAACCAGGAACTTATTTGCGAGTGCATGTGCACCCCAAACGC TTTCCCAGGTGCATTAGAATGTTAGTTGGAGTTGCCATATTTTTATTGTGGAGGAATGATAATGTTTGACATTTTAAAGC TGTTTTTTAGGTGCTATGAGATTGACTGGAGATCAAGGATCATCGCTGTGGCGGAATCGTATGTGGTTTTGGATAAACCT GCTGGTACTTCAGTATGTATTCATTCATTCCACTGTATGAACTCAGAAGAATGTTATTAATCCCCTTTTTTGTTATTTTG GATGCTAGAGATCTAAGTCCTGTAACTATTTTAACCAATGGTTATTTTCTTCACCAAGTGAGTGAAGGTTGTTAATGAGA TTAGGCTATTGAGATTGTTAGTTTGCATCCTTTTTTATTTCACTAGAGCTTCTGCATACTATAGTCCTGATTGAATTGTA CCTAAATTAAAATTTGCTAGACCAGATCAATGAGTTAGTTGTATGACATGGGTAGAAATGGATTTTTTTAGGAGGATGAA AATTAGGTTAACTATAGCAAGTTAGGGTCTGGGGATGGTTAGTAATAATGTACAAGGGTGAAGGGTGGAAATGTAGTAAG ATGAAGGTCTATTTGTCTGTTAAGGAAGCAAAGAACCTGAGACGTGAAACCTGTTAGATTAAGAATTGATAGGTTCTAGG GGATATTCAAGCAAGGAAGGGTGTCATTTTTTAAGGAAATGATGTTTAATTATTAAATGCTTTCTGTTTGATTAAGCTTT TTCACATTAGAAAATTTTAGAAAATAGCATGGAAGCTGAGAAGAAGAAATTAACTGAAGTTTTACACCTAGGGTTCCTTG GTTATTTTACAACCAAGAAGTTAACAGAGTAAATGATTGAACTGTTACATTGTAGCTGAAAGAAAGTATTCCACTGTTTT AGATGTAACTTGATAAGAATAATAAGGAATTGTTCTGTGAGTATATAAGCTGTCTAACCTAGTAAGGAACAGTCGAATAG TTGAGTTTTTAGATAGAACTCCAAAGCACCTAAATAAGATAACTGAAGTCATTTACAACCCAATGCATAGGCTTTCCAAA ATAAGTAAACTATAGGTGCTGAAATATTGCGAATTAAAATAAAACCACTTCGACAGTTACTGTTTCTGTGTTTATGGAAT AGGTGACATTTAAAATGTCTATCCTAATTCCTACCCAGTGAATTCATCCATATTTGATAGGCTTTGAGGTCCACTCACTG GCTGTCCATATGAAGCAACAATGCTATCACGAAACAGTGTTAAATAGAGATATGACAGTTTCAAGAATTTATGAATTGAT TGGTTTGAGGTTTGACATACAGCATCATGAAAAGTTGAACGGTATTTAGGATCATATTTAGAGTGAAGTTTATTCATTTT ATTTAGGTGTTATGCTAGCCTTGAATGGTGTACAGTGTTAGACTACTAATATGAAGAGTAAATAATTCAAGATTCTGCAT AAGTCTTGAAGTTTTTTAATATATTTACATGAATAGTTAGTTAATTGTTCTGTGCATATTTTTTTTAAAATTTTGGTTAG GTAGGTGGCACTACTGACAACATTGAAGAAAGTTGTGTAACCTTTGCAACTCGTGCTTTGGGATTGACAACTCCTTTATT GACTACCCATCAGATTGATAATTGCACTGAAGGCTGGTAATGCATTTATGCTAGAAATAATTAGGCTTAAATACTTTAAG GGTCCCTGAAATTGTACCCCGTATCAAAATAAGTCCCTGAAAAAAATTTTTCCGATTCCGGATCCCTGGAATTGTTTTTT AAATCAGAATAAGTCCCTACGCCGGAGAAGACGGTGGTTGACGACGGCGGTCATGGCGGCGCTACGACCAGGGTGTTGGG CCGGCTTCGTCTCGTCCTCAGGAACTCAGTGGTGGTGGTCTCGTGGGCTGGGTCGTCACAGTTGAAGAGAAAAGGTCAGT CGCAAGTTGATTTCTTCTCGCCGGAATTTATGGAGCTTCTCGGTTTCTTCGTTTTAGCTTTGTTTCTTGCGATTTCTTCT CCCAGATCAGATATATGAAGGTCTAGGAGTGTTTTAAACATGTTATTTCATGGTTTGTGGAAACAATGAGGAGGCAACCA CTGTCTTCTCCGGCGTAGGGACTTATTTTGATCAAACAAATTTTTCTAGGGACCCGGAATCGGAAAAAAAAATTTCAGGG ACTTATTTTGATACGGGGTACAATTTCAGGGACCTACAGAGTATTTAAGCCAAATAATTATGACTCTGTAATTCTGACTG TCTAAATTTTAATGGATGGCAGTTTATGTGCAGTGTGGTATTGGCTAGGACTAAAGAGTATTGCTCTGTGTTTCATGGAA AAATCAGGGTAAGTCTGTGATGCCATTTCATATCTTATACTGGAACATTTTTCTATTGTTTAACTTCTTAAAAAGGCAAA TTCTCACAAGGCATGAGGTGTTCAATCTTCATCAAGAGCTCGGGTTCTACATTTTGGATTTGGAAGAGTGCCTTTGACAC CAAGTGGATGTCCAAATTAATTGTTTCTGGTTTTACGTTGATCATATGTTATTAAACACTTGTGCCATTTATTTATTTAT TTTCAGGAGAAAAAAGTAAAGAAACTCTATCTTGCTCTTACTGCTTCTCCTTTACCAACTGGAATCATTACCCACTATAT GCGGCCTGTTAACATGGCTCCTCGACTTATTTCTGAAGGTAACCTCACAATTCGGGGTGATTGCCAAAGATTTTTGAAAA CCCTGAAATAGATAAATAGTGATAAATAAGTGTGCTTTTATTGACTTCTTTTTCAACAACTTCCACTAGAGAAGCCAATG TCATGCCTTGTGGTATTGGTGGCTCAGAAGCATAACTTGAGACCCTAGCTTTGCCTTTGGTTGATGTTCAATATTCTACT TACTGAAAGAATAAAAGGAAAGAGATAACAATAGAAGACAAAGTGATGCTCTTGAATTATATATTAGTTTTAAACTACTT GAAGGAATTGAGATTAACAATATTATTCTGTTTTAGGTGCATTAACCATGATGGATACTAGCTACTTTGTGAACATGTAT TGTTGGTACATTCTTTGACTATAATTTGAATGTTTTGATATGTGTTAGCCTTACCTAGAGTACTCCACCAACATGATTTG CCAATGGTCTAGGGTATTTCCACCGCAAAGTTAAAATTTGAAACATGTGTTTGCTCTGTGGTTTGGGTAATAAGTTTCCA AATAGGGTCTTGTATTGTGTAATCAACTCAGTATATTTATTGGGTGCAGATTTTATCAAGGGATGGCATCGTTGTCAACT TGAGGTCATGGAATGCAGAAAAGTTCCCTGGCCAACTACTGTTATTCAAGACAAGTATTGTGTTGAAGACTGTGGGTGGC CTTCTCAAGATCATGCATATGAGTGTAAAATAAACCTTCTTACTGGTAAAACTCATCAGGTATGTGAGCTGTCCTTTTTA TGTATTGCTTGTGCCTTCACTGAAGCGTCCTATTTTGTTAACCAGTTAATTGATAATTCATATTTTATATCCCCCTGTAA ACTAAGAAGTGGTTCATTGGCTACTTTATTTTGTGTTATTGTGTCACATGCCTTTGTTAATTAAACCTTATTGAGTTGCT ACATATCACAATAGTACAGAGTCACAGACTATCGTTTTATGAATTTTTGGGTCAAATATTAGTATAATACACTACTGGCC AGAAGGGTTTCAATTTTAAAATATCCCCCCTTCCTTCCCTCCCTATCCATTTGTTTCCTGGATATCTATATGTGCCAAAA TCTGTCATCAACCAGCGACCAATTGAAAGTTTGATTCCTTAAATGAACGGTGAACCAGTTGGTAGCCATTGAGTAGTGTT TCAAAGGTTATAACTATATTGAATAAGTAAAGAAAAATTGTTCTTCCAATATCATTTATGAAGCGGAAACGATGTTTTGT AACTGTATAGTAACTTCAATTTTAATGCAGATTCGTGCTCAGTTTGCTGCCTCTAAGGCACCGTTAATTGGTGATTCTAT GTATATGCCAGCTGCAATTGCAGAGATTTCTAATCCTGGGCTTAATCCATTTGGAAAATACAAGAAAGAATTCAGTAGTG AGAGTGAAAAAGAAATAGCTGTTATGAATTGGATTGCGCAGCATGGTAAAGAGCCGAGTGTTGTAATCGGCCTTCAAGCA TGTCAAATTTCATGGGATGACAATGAACACTTTTACCAAGCTGGGTCCCCTTGGTGGAGGTGTTAAATCGCTGGAAATAA TTCAATGTATGCTTGCGTTGAGGATAAGGATGAACTATGAAGTTGGTTTTAATTTTGCCTCAGCTTTGTGTGAGTATACA ATCTTTCAAGTTGGAAACATCCAAATTCAGGACAACAGATTTTGAAAGCCTAAAAATAGTGTTTTTATATGCAGATACAG ATTTTCAAAGGAGGAAGCTTTGGTAATGGATCTTTATATGCTGTTTCTCATTCTAAAGGAAGGATGCAAGATTCCCTTAC GGTTGTAGAGGAAGACAGTGAGGCTGTTGCTGGTTTGGAAAGAGGAAACCCAAATAAAAAGGAAAAAAGAAAGGAGCTTC ATTGGAAGATCATGCGCGCTGGTGAATTTTACCACCATCTAACTTTTCTATCAGAATCAACTCTGAACAGGTAGACTAGA AGGATATGTTATTCCGAGAGTAAGATGTCTTTTTGAAAATGGTATATTTTACTAGGGGATGAAGAACTAGGAAAGTCACA AGTAATTAGAAATATAGCTGATTAGGCTGCGATATTAATGCCTTATGCTATTGACAACTTATAATTGGACACTGGCTTTT TCTGTTATCAGTAGCTTTGGCATTTCGGCAAAGAGGTTTTTTTGTTTATGCTTGCCAGTCAGTCACTTGTACTATAATAG ATTTTGACTAGGTATTTATTGCATTGTGTTTCTTACAGATTTAGCTTC
CDS sequence (LotjaGi6g1v0296200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCGGTGGCGGTGGCGTCAATGTTGTTCTCCGGCGGCTGCCGGAGCTTCACCGCGCCTGCTGTTTCGCGCGCACT TCGCAATTCGCTTACCAAGCACCTCAACAAGCACGCGTTGAGTTGGCGCCATCGGAGCTCACATAGTAGTAGTAACGCTG CACTCGCCGGAGAAACTGAATCCTCCACAACCGACGCCGGAAACTTACCGTCCTCCTCCTCTCCTTATCACAGCTACCCG AAGTATGATCGGTTGCTTCCATGTCCACTGCACAAATCTCCACCAAGAATCGAACACTTGGTTGTATCAGAAGGAGGACC TGTCTTGGAGTATATTTGCAGGTCACTGGATCTTCATCCTCTGTTTGTTGAAGATCTGATTCAATTTGGAGCTGTATACT ATGCTCTTGTTTGCCCTCACCCTCCTCCTAATGCTACACCAGAGCAACTGAGGATATTCAAAGAAGTAACTGAGCCTTCC GTTTTGCGAAAAAGACCTTCCATTAAGGGCAAAACTTTTCGAGAGGCGCAGAAAACGTTCCGTATAACTCACGCCAATCA ATTTGTTGAACCAGGAACTTATTTGCGAGTGCATGTGCACCCCAAACGCTTTCCCAGGTGCTATGAGATTGACTGGAGAT CAAGGATCATCGCTGTGGCGGAATCGTATGTGGTTTTGGATAAACCTGCTGGTACTTCAGTAGGTGGCACTACTGACAAC ATTGAAGAAAGTTGTGTAACCTTTGCAACTCGTGCTTTGGGATTGACAACTCCTTTATTGACTACCCATCAGATTGATAA TTGCACTGAAGGCTGTGTGGTATTGGCTAGGACTAAAGAGTATTGCTCTGTGTTTCATGGAAAAATCAGGGAGAAAAAAG TAAAGAAACTCTATCTTGCTCTTACTGCTTCTCCTTTACCAACTGGAATCATTACCCACTATATGCGGCCTGTTAACATG GCTCCTCGACTTATTTCTGAAGATTTTATCAAGGGATGGCATCGTTGTCAACTTGAGGTCATGGAATGCAGAAAAGTTCC CTGGCCAACTACTGTTATTCAAGACAAGTATTGTGTTGAAGACTGTGGGTGGCCTTCTCAAGATCATGCATATGAGTGTA AAATAAACCTTCTTACTGGTAAAACTCATCAGATTCGTGCTCAGTTTGCTGCCTCTAAGGCACCGTTAATTGGTGATTCT ATGTATATGCCAGCTGCAATTGCAGAGATTTCTAATCCTGGGCTTAATCCATTTGGAAAATACAAGAAAGAATTCAGTAG TGAGAGTGAAAAAGAAATAGCTGTTATGAATTGGATTGCGCAGCATGGTAAAGAGCCGAGTGTTGTAATCGGCCTTCAAG CATGTCAAATTTCATGGGATGACAATGAACACTTTTACCAAGCTGGGTCCCCTTGGTGGAGGTGTTAA
Protein sequence (LotjaGi6g1v0296200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASVAVASMLFSGGCRSFTAPAVSRALRNSLTKHLNKHALSWRHRSSHSSSNAALAGETESSTTDAGNLPSSSSPYHSYP KYDRLLPCPLHKSPPRIEHLVVSEGGPVLEYICRSLDLHPLFVEDLIQFGAVYYALVCPHPPPNATPEQLRIFKEVTEPS VLRKRPSIKGKTFREAQKTFRITHANQFVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVAESYVVLDKPAGTSVGGTTDN IEESCVTFATRALGLTTPLLTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALTASPLPTGIITHYMRPVNM APRLISEDFIKGWHRCQLEVMECRKVPWPTTVIQDKYCVEDCGWPSQDHAYECKINLLTGKTHQIRAQFAASKAPLIGDS MYMPAAIAEISNPGLNPFGKYKKEFSSESEKEIAVMNWIAQHGKEPSVVIGLQACQISWDDNEHFYQAGSPWWRC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 12 | 11 | - | – | |
| Phobius | 13 | 17 | 5 | - | – | |
| Phobius | 18 | 475 | 458 | - | – | |
| MobiDBLite | 42 | 74 | 33 | - | – | |
| MobiDBLite | 45 | 74 | 30 | - | – | |
| PANTHER | 53 | 474 | 422 | 6.6E-170 | – | |
| PANTHER | 53 | 474 | 422 | 6.6E-170 | – | |
| SUPERFAMILY | 208 | 408 | 201 | 7.4E-28 | ||
| Gene3D | 215 | 437 | 223 | 2.9E-26 | – | |
| CDD | 223 | 415 | 193 | 1.48E-26 | ||
| Pfam | 223 | 391 | 169 | 3.9E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Pseudouridine synthesis | The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA modification | The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. | ||
| Molecular function | Pseudouridine synthase activity | Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. |
Expression pattern of LotjaGi6g1v0296200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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