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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0296900 |
| Transcript ID | LotjaGi6g1v0296900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G77170.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q3ECB8|PP128_ARATH Pentatricopeptide repeat-containing protein At1g77170; TrEMBL-Plants: tr|A0A151T3M8|A0A151T3M8_CAJCA Pentatricopeptide repeat-containing protein family; Found in the gene: LotjaGi6g1v0296900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61449828..61451825) extracted from Lotus japonicus Gifu genome v1.2.
CAAAATTAGATTGTAGGCTAAACCTGGACCGTGAAAAACTTGACTTGATCAGCGCAATGCATTAATAATAAACACATGTG GTGAGAATAGTAGAAACTAGAAAGTTGGTGGGAGAAGAATAGGCTCGGCCTTAGTGCCTTGCTATCGGTCTCGATTTCCC TGCTGCAATTGTTGTAGTCAAGGATTCTTGACCGTTCGATTAAGATTGAATGACTCAAATTTAAAGAGTAAACTATAACT CAAACCAATGTAATTAAATCAGAACCGTGTGATTTAATCCAAGGGCTATGAATGCATGACTTCACTAAATTCAATAGGAG GAATCTAAATTCCGCGCCCTCTGGGCTTAGCCACAACAGGAGGAAGAGGTGAAGACTAGTTTCCAACGCTCGGAGCAACC GCCACAAATTGGCTAATGTTGAGGTTCTTCTTCCAACTTGGCCGTCGCTGTTACTCTGTTTCCCAACGTAGTATCACACA AACTCTGCTGCTAGATTCAGCAAACAACCCAGTAACATTGATAGCTACCCAGTTGTGTAATTGCACTCACATTCACCAAT TGAACCAAGTTTATGCCCACATTCTCAGAACACACTTTCTGGAATCCAACCCTGCCCCCTTTAACTGGAACAACATCATA AGGTGCTACACTAGACTAGAAGCTCCACGCAATGCACTTCGTCTCCATGTTTTGATGCTGCGAGCTGGGGTTTTGCCTGA CCGCTACACTCTTCCAATTGTTCTCAAGGCAGTGTGTCAGTCTTTTGCCATTGAGCTGGGAAAACAGGTTCATTCGCTCG GTGTGAAGATTGGATTGCAAACCAATGAGTATTGTGAAACTGGGTTTATTAACTTGTATTGTAAATCTGGAGAATTTACG AGTGCCCGTATGGTGTTTGATGAAAATCCTGACCCGAAGCTAGGTTCTTGGAATGCTGTTATAGGTGGGCTTTCTCAAGG TGGTCTTGCCAGGGATGCGATCCGCGTGTTTGTTAATATGAGGAGACATGGGTTTGCCCCGGATGGGGTTACCATGGTTA GCCTCACGTCTGCTTGTGGAAGTGTTGGTGACTTGCAGTTGGGTCTACAATTGCATACATGTGTCTATCATGCTAAAGCA GCTGAGAGGACGGATATTTTGATGTGGAATTCGCTGGTTGACATGTATGGGAAGTGTGGGCGGATGGATTTGGCGTACAA AGTTTTTGCGACGATGGACGAGCGGAACGTGTCATCGTGGACATCGTTGATTGTGGGTTACGCGATGCATGGACATGTAA ATGAGGCGCTTGAATGCTTCTGGTGTATGAGGGAGGCAGGAGTAAGGCCTAATTATGTGACTTTTGTTGGAGTGCTTAGT GCTTGTGTGCATGGAGGGAAAGTTCAGGAAGGGAGATGCTACTTTGATATGATGAAGAATGTTTATGGCATAACCCCCCG ACTGCAGCATTATGGATGCATGGTTGACCTGCTGGGTCGAGCAGGGTTGCTTGATGAGGCCATGAAAATGGTGGAGGAGA TGCCTATGAAGCCAAATTCAATAGTATGGGGGTGTTTGATGGGTGCATGTGAAACATATGGGAATGTGGAGATGGGAGAG TACGTAGCTAAGCATTTGCAAGCATTGGAACCTTGGAATGATGGTGCTTATGTGGTATTGTCTAACATTTATGCCAATAA AGGCATGTGGAAAGAGGTGGAGAGAATAAGATCAAGCATGAAAGAAGGAAGACTTGCTAAGGTTCCTGCCTATAGCTTGA CAACAAATTCAGATTGAAGACACAACAATAATTTATTTGAACATTGGGGATTGCTCAATTATAGTTTCTGCTTGTGCCAA TGATACTAGAAATTTTGCTTCTTTTAGTGATAAATACTTCATAAATGGAAGAAATTTCCATAATCATTTTCTTTCTTGAG TTTAAAGGGGGAGGGAAACTAAGTTATGTATGATTAGCTTATAAGAAAGTAAGAAGTTTTTGTAGGCTTACTCAATCA
CDS sequence (LotjaGi6g1v0296900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGAGGTTCTTCTTCCAACTTGGCCGTCGCTGTTACTCTGTTTCCCAACGTAGTATCACACAAACTCTGCTGCTAGA TTCAGCAAACAACCCAGTAACATTGATAGCTACCCAGTTGTGTAATTGCACTCACATTCACCAATTGAACCAAGTTTATG CCCACATTCTCAGAACACACTTTCTGGAATCCAACCCTGCCCCCTTTAACTGGAACAACATCATAAGGTGCTACACTAGA CTAGAAGCTCCACGCAATGCACTTCGTCTCCATGTTTTGATGCTGCGAGCTGGGGTTTTGCCTGACCGCTACACTCTTCC AATTGTTCTCAAGGCAGTGTGTCAGTCTTTTGCCATTGAGCTGGGAAAACAGGTTCATTCGCTCGGTGTGAAGATTGGAT TGCAAACCAATGAGTATTGTGAAACTGGGTTTATTAACTTGTATTGTAAATCTGGAGAATTTACGAGTGCCCGTATGGTG TTTGATGAAAATCCTGACCCGAAGCTAGGTTCTTGGAATGCTGTTATAGGTGGGCTTTCTCAAGGTGGTCTTGCCAGGGA TGCGATCCGCGTGTTTGTTAATATGAGGAGACATGGGTTTGCCCCGGATGGGGTTACCATGGTTAGCCTCACGTCTGCTT GTGGAAGTGTTGGTGACTTGCAGTTGGGTCTACAATTGCATACATGTGTCTATCATGCTAAAGCAGCTGAGAGGACGGAT ATTTTGATGTGGAATTCGCTGGTTGACATGTATGGGAAGTGTGGGCGGATGGATTTGGCGTACAAAGTTTTTGCGACGAT GGACGAGCGGAACGTGTCATCGTGGACATCGTTGATTGTGGGTTACGCGATGCATGGACATGTAAATGAGGCGCTTGAAT GCTTCTGGTGTATGAGGGAGGCAGGAGTAAGGCCTAATTATGTGACTTTTGTTGGAGTGCTTAGTGCTTGTGTGCATGGA GGGAAAGTTCAGGAAGGGAGATGCTACTTTGATATGATGAAGAATGTTTATGGCATAACCCCCCGACTGCAGCATTATGG ATGCATGGTTGACCTGCTGGGTCGAGCAGGGTTGCTTGATGAGGCCATGAAAATGGTGGAGGAGATGCCTATGAAGCCAA ATTCAATAGTATGGGGGTGTTTGATGGGTGCATGTGAAACATATGGGAATGTGGAGATGGGAGAGTACGTAGCTAAGCAT TTGCAAGCATTGGAACCTTGGAATGATGGTGCTTATGTGGTATTGTCTAACATTTATGCCAATAAAGGCATGTGGAAAGA GGTGGAGAGAATAAGATCAAGCATGAAAGAAGGAAGACTTGCTAAGGTTCCTGCCTATAGCTTGACAACAAATTCAGATT GA
Protein sequence (LotjaGi6g1v0296900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRFFFQLGRRCYSVSQRSITQTLLLDSANNPVTLIATQLCNCTHIHQLNQVYAHILRTHFLESNPAPFNWNNIIRCYTR LEAPRNALRLHVLMLRAGVLPDRYTLPIVLKAVCQSFAIELGKQVHSLGVKIGLQTNEYCETGFINLYCKSGEFTSARMV FDENPDPKLGSWNAVIGGLSQGGLARDAIRVFVNMRRHGFAPDGVTMVSLTSACGSVGDLQLGLQLHTCVYHAKAAERTD ILMWNSLVDMYGKCGRMDLAYKVFATMDERNVSSWTSLIVGYAMHGHVNEALECFWCMREAGVRPNYVTFVGVLSACVHG GKVQEGRCYFDMMKNVYGITPRLQHYGCMVDLLGRAGLLDEAMKMVEEMPMKPNSIVWGCLMGACETYGNVEMGEYVAKH LQALEPWNDGAYVVLSNIYANKGMWKEVERIRSSMKEGRLAKVPAYSLTTNSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 38 | 235 | 198 | 2.9E-26 | ||
| PANTHER | 54 | 227 | 174 | 9.2E-87 | – | |
| ProSiteProfiles | 67 | 101 | 35 | 9.131 | ||
| Pfam | 71 | 99 | 29 | 0.068 | ||
| ProSiteProfiles | 137 | 167 | 31 | 5.7 | ||
| Pfam | 144 | 163 | 20 | 0.3 | ||
| ProSiteProfiles | 168 | 202 | 35 | 10.622 | ||
| Pfam | 171 | 200 | 30 | 9.2E-5 | ||
| TIGRFAM | 171 | 203 | 33 | 5.4E-6 | ||
| PANTHER | 225 | 436 | 212 | 9.2E-87 | – | |
| Gene3D | 236 | 331 | 96 | 1.3E-25 | ||
| ProSiteProfiles | 240 | 270 | 31 | 10.063 | ||
| TIGRFAM | 243 | 272 | 30 | 2.9E-5 | ||
| ProSiteProfiles | 271 | 305 | 35 | 11.564 | ||
| Pfam | 271 | 318 | 48 | 1.8E-8 | ||
| TIGRFAM | 274 | 306 | 33 | 6.1E-4 | ||
| ProSiteProfiles | 306 | 336 | 31 | 6.708 | ||
| Gene3D | 332 | 406 | 75 | 6.0E-7 | ||
| ProSiteProfiles | 342 | 372 | 31 | 7.958 | ||
| TIGRFAM | 346 | 369 | 24 | 0.0011 | ||
| Pfam | 346 | 370 | 25 | 3.1E-4 | ||
| ProSiteProfiles | 408 | 442 | 35 | 7.289 | ||
| Pfam | 412 | 437 | 26 | 0.91 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0296900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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