Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0298500 |
| Transcript ID | LotjaGi6g1v0298500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ADP-ribosylation factor-like protein; TAIR: AT5G52210.1 GTP-binding protein 1; Swiss-Prot: sp|Q8BXL7|ARFRP_MOUSE ADP-ribosylation factor-related protein 1; TrEMBL-Plants: tr|A0A0B2RLY0|A0A0B2RLY0_GLYSO ADP-ribosylation factor-related protein 1; Found in the gene: LotjaGi6g1v0298500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61622695..61624898) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTTTCATTGTTTTATGGACTATGGAAGCACATGTTCAGCAAGTTAGAGCTTCACGTACTCATTCTGGGGATTGATAA AGCTGGCAAGACGGTAATACATCTTCAAATACCGTAATTTTAGCAAATCACTGAACTTTGATGTGGTGCTTTGAATTGCT ATATAATACATAATATTTTTGTAGACTTTGCTGGAGAAGATGAAGACAATGTACTCAAATGTGGAAGGCCTTCCTCCTGA TCGAATTGTTCCAACCGTGGGATTGAACATCGGTCGCACTGAAGTGGCAAATAGAAAACTTGTGTTCTGGGACCTTGGAG GCCAGGTATGACAATAAGTAGGCAATATTTTTTTGTTTGTTTAAGTTCTGTAATAATGATATTAGCATAAATTGTTAGTT TAGTTTGGCAAAGTAAATTTGCTCATTGATCCTAATGTTCAAATAATTTCATTTTATAAAGGTAATAGGTAAATCAATAA TCATCTACGTAGTGAGATGTAGTTTTTTATGCTTTTTCATATCTAAATGCGATTAATGAAAGAATAAGAAACTGTTTTGC CAAAAAATCATGGAAGAGCTATATCGAACTAGCTGGTTTAATGTTTTCTGAATTTTGTGTGCGCTATTTTATCTTCCATA CAGAACATCTGCTCTTTGCTTTGTAGATTGTTACGTGAGCGACATAATTTAAACCTTCTATTTTATCCTTTTGATGATGG AAGCTTGAACTGACTTGTTAAAGTTGGCAATGCTTAAGGAGATTTGTAATTGAAAAATCAATCAAACAGTGCTTCATTTT TAACTGTAACCTGTAGATAGCAGGAATAGAATGTATTGTTTGGTGCAGAGAACATACTCGAAGCTCTTTGTAATGATTTT ATATTATTCTGCTCCTTTTCATATTTTCTGTTTGTAATTTTGTGAGTGTTTAACTGGGACGGGGTAGGGTGTAAAAATGT TACAAGATATTAATATAAGTACCCTTCTTATCAGCCTGGTCTTCGCTCAATCTGGGAGAAATATTATGAAGAGGCACATG CTGTTATATTTGTCGTAGATGCTGCTTGTCCGTCACGCTTTGAAGATGCGAAGTCTGCACTTGGTTAGTGAAATTTGATT TTAGTATTTGTAAATAACTAAATATATACTTCTTAAAGTGTTGGTTTGAAGTTCTGATTATAGATATGGTAGAAACGAAC AGCACAGTGATGATTTAATAACTGACTTGTTTACCAGAAAAGGTGCTTCGGCATGAGGATCTCCAAGGAGCGCCTCTTTT GATATTAGCAAACAAGCAGGTGAGAGTAACTCTTTTATCCTTTTCCTATAGCATCATAGCTTGCCCTTTGCTCTAATGAA TGCGTCAAATAGTTCTAATATAGTCTAGTCTATATCCTTTCTGTACGCGTTCAATGCCTTGTTAAATATACCTCAGGGTA CCGGTTCTGCACTTCTGCTTATCCAAGCTCTAGGCAACTTAAGGGTACAAGATATTTTTCATTTTGGTTTTGAAAAAAGA ATGTTTTGTGACAAATTGATTTATGTAGCATTTCAGCACTATAAGCTCTCTTCTAATCTTCTTCCTCTTTTTCCCCTGAT ATATATGTCAACTTAGCCTCTTAGTCTTAGCCTTTTTGTGGAAGTTCACGAGTAAAATATAGCACAATGGTATTCTATCT AAGCCATCCTTGAGGTTTCAACGTTTCACCATTATTGTCTACATTTTCAGTTTCCTCATTTGTTGTCCTCCTCTTTCTTG CCCTCTTCTATGTGTTTTATCAATACAGTGATAGCCATATGTGACATTCTTGTAATTGCAGGATCTTCCTGAGGCAGTAA CAGCTGAAGAACTCGCTCGATATCTAGACTTAAAGAAGCTGGATGAAAGACTTTTCATGTTTGAAGCCGTTTCAGCATAT GATGGGTAAGTAGAAGTTGATAAAGTTGTGTCAACTTCTGTGATGACTGATTATCAATTACCATTTCAGTAACGATTGAG ATATGAGTTCTGGAGTACACGTTCTTCTGTATTGTTTGTAAAAAAATAACATAATGAAGCACTTAACTGAAGGGGCTTTC TTTCGAAATTTGCAGGTTGGGTATTAGGGAAAGTGCAGAATGGTTGGTGCAAGTTATGGACAGAAGCAAGAGGACTGAAA TGTTGAGAGAGCGGGCAGGGGCAATGGGTTCAGGTCCTTCATAG
CDS sequence (LotjaGi6g1v0298500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTTCATTGTTTTATGGACTATGGAAGCACATGTTCAGCAAGTTAGAGCTTCACGTACTCATTCTGGGGATTGATAA AGCTGGCAAGACGACTTTGCTGGAGAAGATGAAGACAATGTACTCAAATGTGGAAGGCCTTCCTCCTGATCGAATTGTTC CAACCGTGGGATTGAACATCGGTCGCACTGAAGTGGCAAATAGAAAACTTGTGTTCTGGGACCTTGGAGGCCAGCCTGGT CTTCGCTCAATCTGGGAGAAATATTATGAAGAGGCACATGCTGTTATATTTGTCGTAGATGCTGCTTGTCCGTCACGCTT TGAAGATGCGAAGTCTGCACTTGAAAAGGTGCTTCGGCATGAGGATCTCCAAGGAGCGCCTCTTTTGATATTAGCAAACA AGCAGGATCTTCCTGAGGCAGTAACAGCTGAAGAACTCGCTCGATATCTAGACTTAAAGAAGCTGGATGAAAGACTTTTC ATGTTTGAAGCCGTTTCAGCATATGATGGGTTGGGTATTAGGGAAAGTGCAGAATGGTTGGTGCAAGTTATGGACAGAAG CAAGAGGACTGAAATGTTGAGAGAGCGGGCAGGGGCAATGGGTTCAGGTCCTTCATAG
Protein sequence (LotjaGi6g1v0298500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSLFYGLWKHMFSKLELHVLILGIDKAGKTTLLEKMKTMYSNVEGLPPDRIVPTVGLNIGRTEVANRKLVFWDLGGQPG LRSIWEKYYEEAHAVIFVVDAACPSRFEDAKSALEKVLRHEDLQGAPLLILANKQDLPEAVTAEELARYLDLKKLDERLF MFEAVSAYDGLGIRESAEWLVQVMDRSKRTEMLRERAGAMGSGPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 188 | 188 | 1.3E-37 | – | |
| PANTHER | 1 | 200 | 200 | 9.5E-103 | – | |
| PANTHER | 1 | 200 | 200 | 9.5E-103 | – | |
| SMART | 2 | 200 | 199 | 8.5E-15 | – | |
| Pfam | 10 | 183 | 174 | 8.4E-48 | ||
| ProSiteProfiles | 11 | 184 | 174 | 18.898 | – | |
| SUPERFAMILY | 14 | 185 | 172 | 3.49E-42 | ||
| SMART | 18 | 187 | 170 | 5.0E-5 | – | |
| TIGRFAM | 19 | 142 | 124 | 7.2E-20 | ||
| PRINTS | 19 | 42 | 24 | 7.0E-10 | ||
| Gene3D | 19 | 184 | 166 | 5.1E-51 | – | |
| CDD | 20 | 181 | 162 | 4.35331E-90 | – | |
| PRINTS | 126 | 147 | 22 | 7.0E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi6g1v0298500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…