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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0299500 |
| Transcript ID | LotjaGi6g1v0299500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT5G19020.1 mitochondrial editing factor 18; Swiss-Prot: sp|P0C8Q8|PP394_ARATH Pentatricopeptide repeat-containing protein At5g19020, mitochondrial; TrEMBL-Plants: tr|K7MAP7|K7MAP7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0299500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61739729..61745090) extracted from Lotus japonicus Gifu genome v1.2.
TGGCCAAAATGCCAAATTATTTTTGGGTTTGCAAAGTCATAATATTTGTCCTGCTAGAAGCCTATAATTATTTAGCGGTG AAATCACTAAGATAAGCGATGTTATTAAATACACCAGTAGCCAACAAAACCAGAAAAACAGTACCCAAACACGCCAACAA ACCAAACCAGTATACAAACACTTCAAATTGAACCGCTAATGATCACACACGTCTAATGTTGGTGTTGATTTCTGCGAGTT TCAGATTCAGAATCGTACATCGATCTCTTTCACTCGAGCTACCAAACCCAACTCTACTAAGATGGGTTTCAAGTTCCAGT TCCATCAAAGCCCCTTCACTCCTTCAAGACCCACAACACTGCATTCGCATTTTCTGCAATGCCAGGCAACACCAGAACCC TGCAGAGTGCGAGCTTGCATTGGTTTCCGCACTCAAGTCATGTTCTTCCATCTCATCCCCTTCTCAGGGCCGCCAAATCC ATTCACTGGCCTTGAAACTTGGATTCCACTCCAACACCTTCATTCAAAACAGCTTAATCAACATGTATGCCAAATGCGGT TCAATTTCTGATGCCCGGTTGCTTTTTCAGGCTTGTCCTGTGTTGGACCCTGTATCCTGTAACATTATGATTTCTGGGTA TGTGAAAGCTGGTCAATTGGACAATGCCTGCCAACTGTTTGACATAATGCCTGGTAAAGGTTGTGTCTCCTACACAACCA TGATCAAGGGTCTTGTGCAAAATGACTGCTTTGGAGAAGCCCTTGAGGTTTTCAAGGACATGATGTCTGATAGTGTGGTC CCTAATGACTTGACTCTGATGAATGTGATATCTGCTTGCTCGCGTTTTGGTGAAATTTGGAACTGTCGAATGATTCATGC CTTGGCGATTAAATTGGCCGTTGACGGGTTAGTCCTTGTTTCGACGAATTTGATGCATGCGTACTGCCTTTGCTCAGGCG TAGGGGAAGCGAGAAGGTTGTTTGATAAGATGCCTGAGCGGAATCTAGTTACGTGTAATGTGATGTTAAATGGATATTCA AAGACAGGCCTTGTTGACATGGCGAGGGAGTTGTTTGAGAGAATTCCTGATAAAGATGTGATTTCTTGGGGCACAATGAT TGATAGTTATACCCAATTGGATTGTTTGCGTGAAGCTTTAATGATGTATCGTGCAATGCTAAGAACTGGACTGGGACCTA ATGAAGTCATGATGGTGAATTTGATTTCAACATGCGGTCGTCGGACTGCAATTGGTGACGGTCGGCAATTGCATGGAACA GTTATTAAGAAAGGCTTTGACTATAACAATTTTATACAGACTACGATTATCTCTTTTTATGCAGCTTGTGGGATGATGGA CCTTGCCTCTTTGCAATTTGAAATGGGTGTAAAGGATCACCTAGAATCATGGAATGCTCTTGTTGCTGGATTCATAAAAT GTGGAATGACAGACCAGGCGAGGCAAGTCTTTGATAAGATGCCTGAAAGAGATGTGTTTTCGTGGAGTACCATGATTTCT GGCTATGCACAAACCGAACAGCCCAAGATGGCACTTGAAGTCTTCCATAAAATGGTAGCCAGTGGAATCAAACCAAATGA AGTCACCATGGTGAGTGTATTCTCTGCAATTGCCACATTAGGCACATTGAAGGAAGGAAGGTGGGCCCATGATTACATAA GTAGCGAATGTATTCCTTTGAATGACAATTTGCGTGCTGCTCTGATCGATATGTATGCAAAATGTGGGAGCATCAACAGC GCCTTACAATTTTTCAATCAGATTCGAGACGAAGTCTCTTCTGTGTCCCCATGGAATGCAATTTTATGTGGGTTAGCCTC ACATGGATATGCAAGTATGTGCCTAGAGGTGTTTTCTGATTTGCATAGGTATCATATTAAACCCAATCCAATTACATTTA TAGGAGTCCTAAGTGCTTGTTGCCATGCGGGGCTGGTTGAGTCTGGGCGGAGAATATTTAAAAGCATGAAGAGTACATAC AATGTGGAACCAGATATCAAGCATTATGGTTGTATGGTTGATCTTTTGGGCAGAGCAGGGCTATTAGAGGAAGCTGAGGA AATTATTAGGAGCATGCCTATGGAGGCCGACATTGTGATATGGGGAACTTTATTAGCAGCATGTAGAACTCATGGAAATG TCAATATAGGAGAGAGGGCTGCAGAGAGTTTGGCAGGGTTGGCACCATCTCATGGTGGAGGTAAAGTACTACTATCAAAC ATATATGCAGATGCAGGAAGGTGGGAAGATGTATCACTGGTAAGAAGAGTCATGCAGGGTCAGAAAATGGAGAGAATGCC TGGGTGCAGTGGTGTTATAAGGTAGTGTATGGAGTTTCAATTCACTTACATTGTTTGCTAATTTTAAGGATGAAAATGCA TGACTCTTCTTACCAGATGCAGTGACTCTTCTTATCATGCATTTAGGTTTTGTAAATTGTCTAGAAATGCTCATTACCAG TTGTGCTTTATGCTTTACGTATAATGTTATTGTTATATTGGGCTTCAAATTTTGGTTTGGAACCTGGACTGGTGGAAATC AGGGAATTTAAGTGTTTGTTTTTTGGCTCCTTTCTTTGTTCAGTCTGCAATTTCTTTGTCCCTAGTCTGTGGCCCAATCT CTGGTGTCCATTTCTTCTCTGGTTTGTACTTGCCTTTACTAAAGTTGGGTATTGTTCTTATTCCAGATACGCATAATAGG AAGAGGCGCCTGTTTCCACAGGTGAAGGGAACAAAAACTGGGTTTTAGTTTGAACATACATAGAATGATTAAGTTTCTTG TGGTGGTATAGATGGGTTGACTGGGGTAGAAATGGGATAGTGCTGAAAAAGTCTAGAAATAAATCCAATCAGTATCCTTT AACAATTGTCCATAATTTGTGTCAAATGAGATTCAGCCTACTTATAGTTCATTTGAACCTACTACAGAAACTAACCATCA TCATGGTAATTGCAAAATTCTTCAATTATAGTTTTGCTCCAAGGTATAAATTATACGCTACTTATTGTGTTGTTTGCTTT TTCTCTTTAAAACTAGAAATATTGATATTTTTATGGTAATTTAGTTAACCTATTGGTTTGTACATTTATTTTCAAGAGAA CAGGACCTTATGTTCCTCAGTTTGATCTTACAATCCAATCTTTGGTGAACCTTGACCTGTCAGAGGAAAGATTGTAATTA TGATGAAAACAATGATATGAGCATGTAAAAGTAGTGGCCCACTTGGCTTTTGATTCCCCTGGATTGCATTAAGAAAAGTT ACCAGGAGGGTTTCTACTTTAGCATGAATGTTAAAGTCAATAACGTTCTTTGTTTGTTATATTCACCTTAAGTTTACAGA AAAATAATTGCAGAATAGAAGCTAGCTTAATTTTTGTTTGTTTTTTTTGGGGTAAAAATTGTCAATATCTAACTTTATGC ATCCCTAGATTTGCTAATTTAGCTGTCAGCTGATTAATATTTTGTTGGATAGTGCGTCATTTGGGTACGTAGAATAGTAT GGCTTTTGGCTGTGAGCATTTTGTATATGGGTCTTATCTCTTTCATCAAGGTGGATAGCATAGATACTTTGTGCTACTAC TTTGGCTTCCTATGGGCCTATTCTTGTCATCGCCTATAATACCTCTACCTCCCTGGGTTGGAAATATTCTTGTTATCTTG TACCTTAAAACGTGACTAGCTTTTCTGGAATTATGATTTGATTGTCTCCCCATGTTGAATGTTTAATTTTATATCTTTTC ACTAATTAAAATTGTTGGTGTCACCAGATACTGTGACTTTGAGCGTAGGTACTAAACGTAATTTGCTTTAAACAGAAGCA TGATTTCTCAACCATGTTTTCCTTGTTCAACCAGTTTATAACTTCAAATCGGTGTTTATGAATCCTTTTTTGTCTGAGAC CCTCAGTATCCAGACTTATTTCATGACTAGTTTGAGTAGAGCATGTTAATCCACCTAAGGGGATAAAGTTCTCTTGATGC CTTTTTTTGCTTCCAATTCATAAGGTTCAAGACTTCAAGTATGAAATTTTGCTGAAGATTAAACAAACTCTTTCCTTCTC ATACCATTACGCAGTAGTATTAGGTGTTTTATGAATCCATTAATAGCTTGCTCGGTTATGCGGTCGGAAGCCCTATAAAC ACTTGTAAGGAGAAGGAACAAAGTGCAGCTTCTGGTGTTATCGTGTTTTGGACTGTGTACCAATAGTCATTCAAACATGC TATAAGTATAAAGCATATGATAGTTTAACTTTTCATCCTTTTCTGCTTATGTAAATGAATGCTCTATTGTCACCTATACT TCACCTCAGTCTGTTTTTTTCAGGGTGTTTGACTGTGAACTTTGTTCTGGAACTGTTACATGGTGTTATATTTTCCCTCC TAAACTTTCCTGTCATCCCACAAAATGTTTATTCTAAAGTTGTGGGCATCATTTACTTGAAAAAGAAAATTACATGAGTT CATGGTGATCTGTTTCAGAAACTATTGCCTATCCATTTAATCAAATTTATTGAATACTTGAAGTTTTGCTGTTTCAGAAA CTATTAGAGGAAGCTGAGGAAATTATTAGGAGCATGCCTATGGAGGCCGACATTCTGATTTGGGGAACTTTATTAGCAGC ATGTAGAACTCATGGAAATGTCAATATATGAGAGAGGATTGCAGAGAGGTTTGCAGGATTGACACCATCTCATGGTGGAG GTAAAGTTCTCCTATCAAACATATATGCAGATGCAGGAAGGTGGGGGAGGATGTATCATTGGTATGAAGAGTCATGCAGG GTCAGAGAATGGAGAGAATGCCTGGGTGCAGTGGTGTTATAAGGTAATTGAGTTTCAATTCACTTACATTTTTTGCTAAT TTTAAGGATGAAGATTCTGATCTTTCAGTATCAATTTTTTTAGGAATCATCAAGCATTTAGGTTTTGTAAATTGTCTAGA AATGCTCCTTACCAGTTGTGCTTTAAGTATAATATTATTGTTAGATTGGGCTTCAAATTTTGTTTTGGAACCTGGACAGG TGGAAATCAGGGAATACCTGTTTTTTATTCCACATTTCCACTACAAGAAATAAGAAATATACAAGGTTGCTGATACAAAA CGAGGGGGGATCCTGAATACAATCTCATCTAGAATGTGTAGATAACTATAGAAATGCAATAACGGTCAAGAAAGTGTTAA ATTTCTCTGATCACCTAGGTCCTGGTTTAAGCTTAACAAATTACAAATGTATTGGTGATTTTGTTATTTTTGGTTTTTGT AAGCTTAGATACCAAAACTTCGAGTCTGGTTTGTTTAACGTTAGAAAGTATGAAAATGGAAAAATATCACGTTCTGAGAT CC
CDS sequence (LotjaGi6g1v0299500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGTGTTGATTTCTGCGAGTTTCAGATTCAGAATCGTACATCGATCTCTTTCACTCGAGCTACCAAACCCAACTCT ACTAAGATGGGTTTCAAGTTCCAGTTCCATCAAAGCCCCTTCACTCCTTCAAGACCCACAACACTGCATTCGCATTTTCT GCAATGCCAGGCAACACCAGAACCCTGCAGAGTGCGAGCTTGCATTGGTTTCCGCACTCAAGTCATGTTCTTCCATCTCA TCCCCTTCTCAGGGCCGCCAAATCCATTCACTGGCCTTGAAACTTGGATTCCACTCCAACACCTTCATTCAAAACAGCTT AATCAACATGTATGCCAAATGCGGTTCAATTTCTGATGCCCGGTTGCTTTTTCAGGCTTGTCCTGTGTTGGACCCTGTAT CCTGTAACATTATGATTTCTGGGTATGTGAAAGCTGGTCAATTGGACAATGCCTGCCAACTGTTTGACATAATGCCTGGT AAAGGTTGTGTCTCCTACACAACCATGATCAAGGGTCTTGTGCAAAATGACTGCTTTGGAGAAGCCCTTGAGGTTTTCAA GGACATGATGTCTGATAGTGTGGTCCCTAATGACTTGACTCTGATGAATGTGATATCTGCTTGCTCGCGTTTTGGTGAAA TTTGGAACTGTCGAATGATTCATGCCTTGGCGATTAAATTGGCCGTTGACGGGTTAGTCCTTGTTTCGACGAATTTGATG CATGCGTACTGCCTTTGCTCAGGCGTAGGGGAAGCGAGAAGGTTGTTTGATAAGATGCCTGAGCGGAATCTAGTTACGTG TAATGTGATGTTAAATGGATATTCAAAGACAGGCCTTGTTGACATGGCGAGGGAGTTGTTTGAGAGAATTCCTGATAAAG ATGTGATTTCTTGGGGCACAATGATTGATAGTTATACCCAATTGGATTGTTTGCGTGAAGCTTTAATGATGTATCGTGCA ATGCTAAGAACTGGACTGGGACCTAATGAAGTCATGATGGTGAATTTGATTTCAACATGCGGTCGTCGGACTGCAATTGG TGACGGTCGGCAATTGCATGGAACAGTTATTAAGAAAGGCTTTGACTATAACAATTTTATACAGACTACGATTATCTCTT TTTATGCAGCTTGTGGGATGATGGACCTTGCCTCTTTGCAATTTGAAATGGGTGTAAAGGATCACCTAGAATCATGGAAT GCTCTTGTTGCTGGATTCATAAAATGTGGAATGACAGACCAGGCGAGGCAAGTCTTTGATAAGATGCCTGAAAGAGATGT GTTTTCGTGGAGTACCATGATTTCTGGCTATGCACAAACCGAACAGCCCAAGATGGCACTTGAAGTCTTCCATAAAATGG TAGCCAGTGGAATCAAACCAAATGAAGTCACCATGGTGAGTGTATTCTCTGCAATTGCCACATTAGGCACATTGAAGGAA GGAAGGTGGGCCCATGATTACATAAGTAGCGAATGTATTCCTTTGAATGACAATTTGCGTGCTGCTCTGATCGATATGTA TGCAAAATGTGGGAGCATCAACAGCGCCTTACAATTTTTCAATCAGATTCGAGACGAAGTCTCTTCTGTGTCCCCATGGA ATGCAATTTTATGTGGGTTAGCCTCACATGGATATGCAAGTATGTGCCTAGAGGTGTTTTCTGATTTGCATAGGTATCAT ATTAAACCCAATCCAATTACATTTATAGGAGTCCTAAGTGCTTGTTGCCATGCGGGGCTGGTTGAGTCTGGGCGGAGAAT ATTTAAAAGCATGAAGAGTACATACAATGTGGAACCAGATATCAAGCATTATGGTTGTATGGTTGATCTTTTGGGCAGAG CAGGGCTATTAGAGGAAGCTGAGGAAATTATTAGGAGCATGCCTATGGAGGCCGACATTGTGATATGGGGAACTTTATTA GCAGCATGTAGAACTCATGGAAATGTCAATATAGGAGAGAGGGCTGCAGAGAGTTTGGCAGGGTTGGCACCATCTCATGG TGGAGAAACTATTAGAGGAAGCTGA
Protein sequence (LotjaGi6g1v0299500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVLISASFRFRIVHRSLSLELPNPTLLRWVSSSSSIKAPSLLQDPQHCIRIFCNARQHQNPAECELALVSALKSCSSIS SPSQGRQIHSLALKLGFHSNTFIQNSLINMYAKCGSISDARLLFQACPVLDPVSCNIMISGYVKAGQLDNACQLFDIMPG KGCVSYTTMIKGLVQNDCFGEALEVFKDMMSDSVVPNDLTLMNVISACSRFGEIWNCRMIHALAIKLAVDGLVLVSTNLM HAYCLCSGVGEARRLFDKMPERNLVTCNVMLNGYSKTGLVDMARELFERIPDKDVISWGTMIDSYTQLDCLREALMMYRA MLRTGLGPNEVMMVNLISTCGRRTAIGDGRQLHGTVIKKGFDYNNFIQTTIISFYAACGMMDLASLQFEMGVKDHLESWN ALVAGFIKCGMTDQARQVFDKMPERDVFSWSTMISGYAQTEQPKMALEVFHKMVASGIKPNEVTMVSVFSAIATLGTLKE GRWAHDYISSECIPLNDNLRAALIDMYAKCGSINSALQFFNQIRDEVSSVSPWNAILCGLASHGYASMCLEVFSDLHRYH IKPNPITFIGVLSACCHAGLVESGRRIFKSMKSTYNVEPDIKHYGCMVDLLGRAGLLEEAEEIIRSMPMEADIVIWGTLL AACRTHGNVNIGERAAESLAGLAPSHGGETIRGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 35 | 162 | 128 | 1.4E-17 | ||
| PANTHER | 48 | 158 | 111 | 2.0E-123 | – | |
| ProSiteProfiles | 100 | 130 | 31 | 6.39 | ||
| Pfam | 105 | 125 | 21 | 0.18 | ||
| ProSiteProfiles | 131 | 165 | 35 | 11.981 | ||
| Pfam | 133 | 163 | 31 | 1.4E-7 | ||
| TIGRFAM | 133 | 164 | 32 | 1.8E-7 | ||
| PANTHER | 144 | 212 | 69 | 2.0E-123 | – | |
| Gene3D | 163 | 221 | 59 | 1.5E-8 | ||
| Pfam | 164 | 209 | 46 | 2.6E-8 | ||
| TIGRFAM | 164 | 197 | 34 | 6.1E-10 | ||
| ProSiteProfiles | 166 | 196 | 31 | 8.199 | ||
| PANTHER | 219 | 290 | 72 | 2.0E-123 | – | |
| Gene3D | 222 | 348 | 127 | 7.3E-25 | ||
| ProSiteProfiles | 232 | 262 | 31 | 6.599 | ||
| Pfam | 237 | 263 | 27 | 0.024 | ||
| ProSiteProfiles | 263 | 297 | 35 | 10.841 | ||
| Pfam | 265 | 294 | 30 | 2.2E-6 | ||
| TIGRFAM | 265 | 293 | 29 | 2.2E-5 | ||
| PANTHER | 273 | 351 | 79 | 2.0E-123 | – | |
| Pfam | 296 | 325 | 30 | 2.6E-4 | ||
| TIGRFAM | 296 | 330 | 35 | 1.2E-5 | ||
| ProSiteProfiles | 298 | 328 | 31 | 7.169 | ||
| ProSiteProfiles | 329 | 363 | 35 | 5.579 | ||
| Gene3D | 349 | 483 | 135 | 6.3E-27 | ||
| PANTHER | 349 | 422 | 74 | 2.0E-123 | – | |
| ProSiteProfiles | 395 | 425 | 31 | 9.887 | ||
| TIGRFAM | 398 | 427 | 30 | 8.7E-6 | ||
| PANTHER | 400 | 483 | 84 | 2.0E-123 | – | |
| ProSiteProfiles | 426 | 460 | 35 | 12.891 | ||
| Pfam | 426 | 472 | 47 | 3.2E-11 | ||
| TIGRFAM | 428 | 462 | 35 | 6.7E-9 | ||
| ProSiteProfiles | 461 | 495 | 35 | 5.119 | ||
| PANTHER | 480 | 659 | 180 | 2.0E-123 | – | |
| ProSiteProfiles | 496 | 526 | 31 | 7.004 | ||
| Gene3D | 496 | 672 | 177 | 5.0E-37 | ||
| Pfam | 502 | 525 | 24 | 0.2 | ||
| ProSiteProfiles | 529 | 563 | 35 | 8.462 | ||
| Pfam | 533 | 558 | 26 | 0.075 | ||
| TIGRFAM | 533 | 564 | 32 | 0.0021 | ||
| ProSiteProfiles | 564 | 594 | 31 | 8.583 | ||
| TIGRFAM | 567 | 600 | 34 | 1.1E-4 | ||
| Pfam | 567 | 593 | 27 | 0.017 | ||
| ProSiteProfiles | 600 | 630 | 31 | 8.309 | ||
| TIGRFAM | 604 | 634 | 31 | 6.2E-4 | ||
| Pfam | 604 | 628 | 25 | 0.0036 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0299500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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