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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0301000 |
| Transcript ID | LotjaGi6g1v0301000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|G7IKD2|G7IKD2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi6g1v0301000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61863577..61866645) extracted from Lotus japonicus Gifu genome v1.2.
CCACATTCTCATTCATGTAGCTTCTGCCACTCAGAAATGGCATCAGATACTCAAGGGCAACCTTCACTCCCTTCCTCTTC TCACCCTCCCAATGATTCACTTCACGCGTCGCTACTTCCAAGCCTTCCTTTCGACCTCGTGGTGGAAATCTTGTGCAGGC TCCCCGTGAAGTCCCTCTTGGAACTCCGCTATGTATGCAAGTCTTGGAATTCCTTAATCTCCGATCCCAAGTTCGCCAAA AAGAACCTCCGCTATTCATTGACAGACTTCACTCGCCACCACCTCATCGTAAGCAACTTCTCATACTACACACGCGAGTT ATCTTTCACAACTTACCCGCTACTCTCTATTTTCAACGTCGTAGCGCCTGCTCCCGCCATTCAACTTGAGTACCCTATGG GCAGTTACAAACGTTTGGATGAAATCAATGGATCTTGCCACGGCATCCTCTGCTTCAGCGATGATTATTCAAACTTTCCT TTTTTATGGAATCCTTCCACTCGGAGATTTAAGAAACTACCCCCTTTGGAAAATTTACCGCTAAAGAGATCATGTTACAC AATATATGGTTTTGGTTACGATCATTTCTCTGATTGCTATAAAGTAGTTGCAGTTTTCTGCTATCCAAGTGATAATGGGG GTTACAAAACACAAGTCAATGTTTATACTTTGGGTACATATTCTTGGAGGAGGATTCAAGAATTCCCTTTTGAAGATGTC CCAAAAGATCCAGGAAAATTTGTAAGTGGCACTATTAATTGGTTATCATTTGATGATTCTAATTGGGTTGTTGTTTCTCT TGACTTGGAGAAGGAAAGTTATCAAAAACTTAATCAACCTACTACTGGTTATGGAAAAGTGAATTTGACTTTGGGGGTGT TGAGAGATTGTTTGTGCATCATTTCTAAATATGATACGTTTTTTGATGTTTGGCTTATGAAGGAGTATGGAAATAAGGAG TCTTGGAGTAAATTATTCACCATAAGGGAACTAGGGTCTTCATATGCAAAGATACTTCATATGTCAGAGAGTGAGGAAGT GCTGCTGGAGTTAAAAGAGAATTTTGTTCTATACAATTTCAAAAATGGAACTTCTAAGACAGCCTACATTCAAATGGAAC TTCATATGTTAGAGGATGATGGCTCCCTGATGGGCTCAGAGGTCTATGTAGAAAGTTTGATGTCACCTTGTTCTTTGTAT TAAGATGTGGACGCTGCTATGCTTGAAGAATTTGTCAACCCATTAACTAGACCTTACATGTTTTCATTTCATTCAATGTA TCTTAATTATTTTTTGGCAAACTTAAAAATGCTGTTTGTGTTTTAAACAGCAGCAATGCCCCCCACTTATTGGCCAATAG CAAGATGCCTAATGTACTAGACTGCCATATCATCCATTTTGACTAGTAATTTTAATGTTTTAAATTTGGGTCCCTAAACT TCTTAAGTTTTCCATTTTATCCTCCAACTATTCACACTTTTAAATCATTTTTGAACTTAAGAAAATCAAATTAAACCTAA AATAAAATTTGAGAAACACATTCATTAACCTAAAACCTTTCTGCTTCATCCTAATCTCTCTTCAGCCGCAGCTTCCTCGC CGGTGATGGAGGCTCCACCACCGTGTTCCAGCTTCTAGGCCTATTCAACCGAAGTATCTCCTCCACCCGCGAGTCCTCCT CCACCCCCTCCCACGCCGCCGCAAGCATGGTTTATTCCGACCAGAAGCACCTTCGTCGCAAGCCCCTTTTCATATGAAAA TAATCACCTCATCCGTCGCAAGCACGCCTCTGGCACAAACTTTTGCGAGCCTATGTACGCTCCTATCACCCAGGTAGATA TTTTTATTATGTAATCAATACTGAAACTTGCTCCAGTACTTCATATCTGTGTCCATTTCATGTAGGAGGGGAGTCTGTAC ACCCACTGAGGTTCATCTTATCCGGACAATTATTTTGCATATGTGTGTATTCTGAGTACATATCAATTGCCTGTTTTTTT TTTGTCTCAAACTAAAAGATTTTTGAAGTTTTAATTAAATTATCTGGGTTAAGTTTCTTCCAGGGCTCTGCTTGATAGAT GCATTCGTTTAGGTTCTTGTAGTTTATTGGCAAGATCAGAACTCTTGACCTAGGCCTAGAATCCAGTTATTATCTATTGG CTAAAATTTCTAGCTGTGTTGGAGGCAGTGATGGATTTGGAGGAACTGCTAATAACTCTCTTCTCAAAATAACATTCTAA TACTGTTGCTCTCATGCTTCCTTTATTAATGTGAATTCTAAAATAAGACTTGGCTTGAAATAAATTATTAGTTCAAACTT TCCTGGAAAGAGCATGATGTGCTTTAATCAGCAAGTGTGGAACAGGTGTTGAATTGTTGATTGAATAATTATAATGTTCT GATAAGTGTAGCAGGAGACATATCAGGACATATTTAGAAATAAGTTATCACTAGTTTGAACTTGGAAATAGCAAGATAAT TTAATTGCTTGGAAATTAAATAAATTTACAGAAAACTACATTTTACCTTTTATGAAGGAGAGCATCTTTATGATAATGTA TCAGGGTTTTCACTTTGTATATAGATCTTGTTTTCATACCTTAAGAAAGATTGTAAAGCTTGTCATTTGATTATTGCTTG TTTCCTTCCTTTTGTTTTAATGTAATTGGATAGTTCCTAATTGTCTGAATGTTTCAAATGTGCAAATTATGGGAGATTTA GTGTGAAATTTGGTTTATCGAATTTGAGAGAACACAATTTCAAAGTGATAAAGCTAAAGCAGTGCATATGAAATTTCAAA GTGCTAGGAAGTCCCAAGTTGGAAGACTTGAAGTACAGCAAGGGCAGCAAATAATGGTTTTAAAGTGGAAGTCCCAAAAA TGCTTTGAGGAGTGGTAGAAGATATTGCTCCCCTTCTTTATGGATTTCTTGATGTAACATGCCTGCAAAGCAATTGCTTT CCATTTTCTATAAAAAAAATTGTAAATTGATCTCATTAACTCTCTTATTGTCTGTTTCAACCAATAAAATTATGTCATGT TAACTAACAATGCATGGATATGACATTTT
CDS sequence (LotjaGi6g1v0301000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCAGATACTCAAGGGCAACCTTCACTCCCTTCCTCTTCTCACCCTCCCAATGATTCACTTCACGCGTCGCTACT TCCAAGCCTTCCTTTCGACCTCGTGGTGGAAATCTTGTGCAGGCTCCCCGTGAAGTCCCTCTTGGAACTCCGCTATGTAT GCAAGTCTTGGAATTCCTTAATCTCCGATCCCAAGTTCGCCAAAAAGAACCTCCGCTATTCATTGACAGACTTCACTCGC CACCACCTCATCGTAAGCAACTTCTCATACTACACACGCGAGTTATCTTTCACAACTTACCCGCTACTCTCTATTTTCAA CGTCGTAGCGCCTGCTCCCGCCATTCAACTTGAGTACCCTATGGGCAGTTACAAACGTTTGGATGAAATCAATGGATCTT GCCACGGCATCCTCTGCTTCAGCGATGATTATTCAAACTTTCCTTTTTTATGGAATCCTTCCACTCGGAGATTTAAGAAA CTACCCCCTTTGGAAAATTTACCGCTAAAGAGATCATGTTACACAATATATGGTTTTGGTTACGATCATTTCTCTGATTG CTATAAAGTAGTTGCAGTTTTCTGCTATCCAAGTGATAATGGGGGTTACAAAACACAAGTCAATGTTTATACTTTGGGTA CATATTCTTGGAGGAGGATTCAAGAATTCCCTTTTGAAGATGTCCCAAAAGATCCAGGAAAATTTGTAAGTGGCACTATT AATTGGTTATCATTTGATGATTCTAATTGGGTTGTTGTTTCTCTTGACTTGGAGAAGGAAAGTTATCAAAAACTTAATCA ACCTACTACTGGTTATGGAAAAGTGAATTTGACTTTGGGGGTGTTGAGAGATTGTTTGTGCATCATTTCTAAATATGATA CGTTTTTTGATGTTTGGCTTATGAAGGAGTATGGAAATAAGGAGTCTTGGAGTAAATTATTCACCATAAGGGAACTAGGG TCTTCATATGCAAAGATACTTCATATGTCAGAGAGTGAGGAAGTGCTGCTGGAGTTAAAAGAGAATTTTGTTCTATACAA TTTCAAAAATGGAACTTCTAAGACAGCCTACATTCAAATGGAACTTCATATGTTAGAGGATGATGGCTCCCTGATGGGCT CAGAGGTCTATGTAGAAAGTTTGATGTCACCTTGTTCTTTGTATTAA
Protein sequence (LotjaGi6g1v0301000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASDTQGQPSLPSSSHPPNDSLHASLLPSLPFDLVVEILCRLPVKSLLELRYVCKSWNSLISDPKFAKKNLRYSLTDFTR HHLIVSNFSYYTRELSFTTYPLLSIFNVVAPAPAIQLEYPMGSYKRLDEINGSCHGILCFSDDYSNFPFLWNPSTRRFKK LPPLENLPLKRSCYTIYGFGYDHFSDCYKVVAVFCYPSDNGGYKTQVNVYTLGTYSWRRIQEFPFEDVPKDPGKFVSGTI NWLSFDDSNWVVVSLDLEKESYQKLNQPTTGYGKVNLTLGVLRDCLCIISKYDTFFDVWLMKEYGNKESWSKLFTIRELG SSYAKILHMSESEEVLLELKENFVLYNFKNGTSKTAYIQMELHMLEDDGSLMGSEVYVESLMSPCSLY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 15 | 97 | 83 | 4.5E-9 | – | |
| SUPERFAMILY | 19 | 155 | 137 | 1.7E-14 | ||
| ProSiteProfiles | 24 | 70 | 47 | 12.147 | ||
| Pfam | 27 | 70 | 44 | 3.3E-10 | ||
| PANTHER | 28 | 369 | 342 | 9.7E-71 | – | |
| PANTHER | 28 | 369 | 342 | 9.7E-71 | – | |
| SMART | 30 | 70 | 41 | 1.0E-7 | ||
| TIGRFAM | 133 | 348 | 216 | 2.5E-36 | ||
| SUPERFAMILY | 136 | 314 | 179 | 9.55E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0301000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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