Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0303200 |
| Transcript ID | LotjaGi6g1v0303200.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WAT1-related protein; TAIR: AT1G68170.1 nodulin MtN21 /EamA-like transporter family protein; Swiss-Prot: sp|F4HVM3|WTR10_ARATH WAT1-related protein At1g68170; TrEMBL-Plants: tr|G7IL80|G7IL80_MEDTR WAT1-related protein; Found in the gene: LotjaGi6g1v0303200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62070994..62073844) extracted from Lotus japonicus Gifu genome v1.2.
CCTTTCCTTTACTCTAATGACTTATTATATTTCAGTTTCTCTATCTCTCATTCACTATCAGCTTATCACACACACTTGTC TTCTTCAGTGAAATTTAAGCCCGTATTCAGAGTGCACTGACTAAAGATGAAAGACAATATTGGCAATGTGGTGCAGGGGT TGAAACCAACGTTGCTAATGGTGGCTGTGCAGATAGCATTTGCAGGGGTGAATGTGCTCTACAAGCTCGCCTTAAACGAT GGCATGAACTTGAGGGTGGTTAGTGCCTACCGCTTTGTATTCGCCACTGCTTTCATGGCTCCACTTGCTCTTATCCTTGA AAGGTTAGTTCCTTCTTCAATTTATAAAAAAATTATTGATCCAACTGATCCATATATATGCTTTTATTTTGTCCATGGAT GTTTGTAGAAAGAACAGGACAAAGATGACTTGGATGGTGCTGTTTCAGTCTTTTCTGTGCGGTGTATTTGGGTAGGTATG TAGTGTCATACTCCCTCCGTTCCTAAATATAAGACCTAATACAAAAAATTGCGCTTATTAAGAAAACATTAAATGTGTTC AATTAGTGTATTGGTTTTTTAAAAATGCATACATTCCTCCATATTTACCCTTTGTCATTTTCTCTCACTAATTAATGATA AGTGGTAATCAAAACTTGGGAATTGAAAACATATAATTAATGTGGAGGGTAAAAATGGAAGAGTACAAAACCTTTTGTTA GATTATTGTAACTAGGTCTTATATTTAGGAACTTCAAAATTTTGAAACTAGGTCTTATATTTAGGAACGGAGGGAGTAAT GTTTATTGATATGTTCCTTTATTATATACCACTTAATTGATACTCCTTTCAATTTATTATGGACTAATTTATTAGCACAA GTTGGTACTTGCATGAATTTCTTTCACGTATCCTGATATTCATTTCATTGATTTGATTATGCAGAGGAGCATTGTCTCAA ATTTTGTACTTAGAGTCCCTGGCTTTAACTTCAGTGACATTTGCATCTGCCATGTCCAACCTTACACCAGCCATAACCTT TATCATTGCCGCTTCCTTCGGGTAATTAATTAAAGTAATTAACCATTGATTTTACTTCATTCATATTAAAGAATCGAATT TAATTTCCTTATTCAACAGATTGGAAAAAATAAATTTGAAAACAGTAGCAGGGAAGGCTAAGATAGTAGGTACAATAACT GGAATTGGTGGAGCAATGGTACTGACTCTGGTTAAAGGCATGGAAATTAAAATTTGGTCCTTCCATCACATACACCTTTT GCATCACCAAAATGGTGCTCACCAACACGCTACAAGCACTGGTAAGAACCTTTTGGGTGCTCTCTGTGCACTAGCCAGCA GCATCTCTTACGCATTGTGGCTTACTATTCAGGTCAGTTCAGTTTGCAGGTTCAGCAACTAATTAATCTTTTGTTTAGTG TTAACTGTTAATCCTTTTATGTTCTGCAATGTTTGGTTTTAAATTAATCTTGAACTGTTGTGTCTCAGAAAAAAATGACT GAAAGTTACCAGAGTTATTACACAAGCACCGCATTGTTGTCATTTTGGGCATCAGTACTATCCGTCCTGTTTGCTCTTTG CATTGAGAGGGATTTGAGTCAGTGGAGGCTGGGTTGGAATGTTAGATTACTAACTGTTGCTTATGCGGTATGTTATTTGA TCGCTTAATAATTATTTTAAGATAATGCTAACTTTAAGCTATCATCAATAATTATATATGAATTGACTGGCATAGGGTAC AGTGGTTTCTGGACTGGTGGTGGTTGTAATTTCATGGTGTATCCAAATGAGAGGTCCTTTGTTTGCCTCTGTTTTCATGC CTCTGGTTCTTGTGATTTTGGCCTTTCTTTGTTCTCCGCTATTGAACGAAACCCTATACCTTGGAAGGTACGTATCTCAG GCTTTACTTGTCATTCTCAAAACACACATCTCAACACATTAACTAAGAAATAAGATTTTGTCACATTCTTTTCAAAAACG ATTTGTCACATTGACAGAGAGTTAATTCAACAGAAATCCTCATGTATCATGTTTTGTGCTGTTTTATAGCTTATAAATTG TTCACCTATAGTGTGATTTTTAGCCATATATGTTAAAAATGGTTAGCTAATTAAACTATAATTGATTGGTTTTGCTAATT TCAGCATCATTGGAGCAGTGTTGATTGTATGTGGCTTATATGCTGTTATATGGGGTAAAAGCAAAGAGATGAAGATGAGT CCTTTGGTGTCTTCAAATGAATCCGATACAGTCGAAATAGTCTCGAAATCTACAGTATCAGAATCAGAAGAGAAAAGCAA CAAAAATGGCATCAAATGATTAGGCAATGAATATACCAAAGGCTGATTGAGCAAGAGTTAAAGCACATAATATTGGAAGT GGCAAAGTGAGTGGGAGTTGATATTATATGCCCCATAATACATTTCTTAGTTTTTAATTTCACTTTTTCTAGAAGTTGCT TGCTGTGGTGCCTCCTCCCAAATGTAGATATGGTGCCGCCGCTTAGTTGGACCAGTAGAAAAGTACTATGTTTTATATGA GTCAGCAAGTATATTTTTCCTATGATTTTTTTTTATAATATTATTTTTGAAAATATAGTTATTATTTTTTGCTAATTGGT CCCTTCACCTAAATATAAGAGTTTAACCTTGGTAACTGTTAAAGTTAGTGTCCATCAACGTCAAAAAAAAAGTTTTCCAT CCATCTTCTCTCTCAATTGGAAATTATATTTGTTCTTCTTCTTCTCCCACTTTTCTTCTGGGATTTATTCATATCCATCT CCTCCCTCCTCCTCCTTAACCCAAACCCATAACATATGAACCCAAACCCAG
CDS sequence (LotjaGi6g1v0303200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCAACCTTACACCAGCCATAACCTTTATCATTGCCGCTTCCTTCGGATTGGAAAAAATAAATTTGAAAACAGTAGC AGGGAAGGCTAAGATAGTAGGTACAATAACTGGAATTGGTGGAGCAATGGTACTGACTCTGGTTAAAGGCATGGAAATTA AAATTTGGTCCTTCCATCACATACACCTTTTGCATCACCAAAATGGTGCTCACCAACACGCTACAAGCACTGGTAAGAAC CTTTTGGGTGCTCTCTGTGCACTAGCCAGCAGCATCTCTTACGCATTGTGGCTTACTATTCAGAAAAAAATGACTGAAAG TTACCAGAGTTATTACACAAGCACCGCATTGTTGTCATTTTGGGCATCAGTACTATCCGTCCTGTTTGCTCTTTGCATTG AGAGGGATTTGAGTCAGTGGAGGCTGGGTTGGAATGTTAGATTACTAACTGTTGCTTATGCGGGTACAGTGGTTTCTGGA CTGGTGGTGGTTGTAATTTCATGGTGTATCCAAATGAGAGGTCCTTTGTTTGCCTCTGTTTTCATGCCTCTGGTTCTTGT GATTTTGGCCTTTCTTTGTTCTCCGCTATTGAACGAAACCCTATACCTTGGAAGCATCATTGGAGCAGTGTTGATTGTAT GTGGCTTATATGCTGTTATATGGGGTAAAAGCAAAGAGATGAAGATGAGTCCTTTGGTGTCTTCAAATGAATCCGATACA GTCGAAATAGTCTCGAAATCTACAGTATCAGAATCAGAAGAGAAAAGCAACAAAAATGGCATCAAATGA
Protein sequence (LotjaGi6g1v0303200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNLTPAITFIIAASFGLEKINLKTVAGKAKIVGTITGIGGAMVLTLVKGMEIKIWSFHHIHLLHHQNGAHQHATSTGKN LLGALCALASSISYALWLTIQKKMTESYQSYYTSTALLSFWASVLSVLFALCIERDLSQWRLGWNVRLLTVAYAGTVVSG LVVVVISWCIQMRGPLFASVFMPLVLVILAFLCSPLLNETLYLGSIIGAVLIVCGLYAVIWGKSKEMKMSPLVSSNESDT VEIVSKSTVSESEEKSNKNGIK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 252 | 252 | 1.0E-121 | ||
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| PANTHER | 1 | 252 | 252 | 1.0E-121 | – | |
| Phobius | 4 | 12 | 9 | - | – | |
| Phobius | 13 | 17 | 5 | - | – | |
| Phobius | 18 | 80 | 63 | - | – | |
| TMHMM | 26 | 48 | 23 | - | – | |
| TMHMM | 81 | 98 | 18 | - | – | |
| Phobius | 81 | 99 | 19 | - | – | |
| Pfam | 82 | 220 | 139 | 2.5E-11 | ||
| Phobius | 100 | 110 | 11 | - | – | |
| TMHMM | 111 | 133 | 23 | - | – | |
| Phobius | 111 | 131 | 21 | - | – | |
| SUPERFAMILY | 124 | 225 | 102 | 1.15E-7 | – | |
| Phobius | 132 | 150 | 19 | - | – | |
| TMHMM | 148 | 170 | 23 | - | – | |
| Phobius | 151 | 170 | 20 | - | – | |
| Phobius | 171 | 176 | 6 | - | – | |
| TMHMM | 175 | 197 | 23 | - | – | |
| Phobius | 177 | 197 | 21 | - | – | |
| Phobius | 198 | 202 | 5 | - | – | |
| TMHMM | 201 | 220 | 20 | - | – | |
| Phobius | 203 | 222 | 20 | - | – | |
| Phobius | 223 | 262 | 40 | - | – | |
| MobiDBLite | 235 | 262 | 28 | - | – | |
| MobiDBLite | 248 | 262 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0303200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…