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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0304500 |
| Transcript ID | LotjaGi6g1v0304500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT3G06330.1 RING/U-box superfamily protein; Swiss-Prot: sp|F4JKK0|SUD1_ARATH Probable E3 ubiquitin ligase SUD1; TrEMBL-Plants: tr|I1MF85|I1MF85_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0304500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62181928..62187486) extracted from Lotus japonicus Gifu genome v1.2.
CCACGGTCTTCTACAGTTCCTCGGAGTCCATGTGGTTCTTGTATCTTTGTTGGAATCTTTAACCTTTTCTTCTTCTTTCC TTTTTTATCTTTTCTTCTTCTTCTTCTTCTTCACCTTTTCTTATTCCACCCTTTTCACACTGCGATTTTCTGGAGCTTGC TATAATGCAAGCAACTCAACCATCACCCACTCATGAAGCTCCTCAGATTTCCCATCAGGTTTATTCTTACATCTAAACTA TGTTAAAGTTAATCTCTTTTCTTCTTTTCCTCCAACCCCTTTTAATCTGATTCATTTCTATGAGCTTCACAGTTGGTTAA TCCTCTCTTAGCATGCAGTGGTTGGTTGGTATTTGATTTTTAGGACAGGTTTTTAGCTGTTTGATTCAATTGATGATAAA GGGTTTCCAATTTCAGCTGAAGTTAGGCCTAGTACTTGCGATTTTTTCCTGAAAGCTCACTTTTTTTTTAATTGTTTTCA TGAACTGTGCTTCAGTTTCAGTTTTTAGAATAATGGGTCAGGATATGAATCTTCTCTTTCCATTTAAGTAACTGTGGTGT GTGGTTATCTGGATAACTTACTTGAAAGCAATTCAATGTTATGCATGTCCTGCAAACTTCAACTTGATTTAGTAGATCTA TTGGTGGAAAAGAGAATTAGGACATGCATGCCCTTGTTTTTGTAATGTTGGGAGAATTTATCCAGAATTGGTGGGCAGAA AATTTGTTCTTTTGTTTATAGGAGTTGCAATTGTAATGTTTGTGAAGGTCCTTGATGAGTCCTTCAGCTATGTGCTCCAA CTGATTTTGTAGTTTGTAAGGAGAGTTCTTGATATGCTATTTTTCTTCTTAATATCTGCGACATTTTGCTGTGTTTTGTA ATTTGTTCTGGAAGTTCGTGTAATGAAATTGGTAGATTTGACTAGTCGTGTCTTAAATTCAATGATTGATTCTAGATGTG AAACAAGCAAACTTCTGCTAGTGATTAGCATGTGGAGGATCGTTAGTTATTCATCATGGAATTATGTGGGAATGCAATTT CTGTAGTTCCTGCATTCTGTTTATTTCAATTTCTGAGGATCATTTCTATGTGTTGTCTGAGTCTCTGAGGTGCTTTGACA CATTATGTTACATTACATGCAGGCTGACAACCAGCTAAACAAAGAAGATTCAGATAACAGACCTAGCGGGAAGCGTCCAG ATATTTCACTTCAAGTTCCACCTAGACCTGCAGGATTTGGCACCACTAGTGGTGGAAAGGTTCTGAACCATTCTCAAAGT TTCTCCAAAGGGAACTCATCACCAAGAGGCTTTTTGCGGGCCTTAAGCTTCAAAAGAAAAGGAAATGTAACAGATGGCGA AAGAAGCAGCCTCCTTAATCCAGAACCCAAGACATCTGCAGACAATCCTAATATGGCCTCCATATCTGAAGTTCCATGGT CAAGGTGTACTTCTCTTCCCGTTACACCTGCAACAAATTTGTCCCCTGCAGTTTCTACGCCTATTTCCGCAAGGACATAT AATGAACAGATTAAGCCACATGTAAGTTCTCTTCCGTTTCATCACTTGCCTTGTAAAGGATTTTCAAAAGAAGAAAAATA ATGCTAACAGTATCTCAAGCCTTGGACAAAGACAAATTCAGTGGTAAAAGTTATATTACACTCAGACATCAAGATATTGT ATCAAACTCGTTACCAAAGATACTAAATATGTGCCTCTATCCAGAAAGGGGAAGATAAAACTGATCAGATTTGAAAATTT TATTAATGTATATTAAAAAGCATGATGATATACTCACAATTGCACTAAATTGAGGTTTGCCTGAAGAAGTTGAAGGATTT TTTTAGGAAAAGATTGATTGTGGTTAACTTTGTGCAGAAAGATGTTGTTCGTGCTAAGGTTTCAAGGTCCCTTTCTGTAC CTGGACGAAATGTAGTTATTGTAAGATCTGTCTCCTTCTCTACCCGTAATGAACAGGAACAACAAGATATAAATGATGGT ATGTTATGTCATTTACTCTATGCTATTACAGTTTCATATTCCTACTTTTTATCTATTTTAAATTCATATATATTCCTGAA GAAATCTAATACATTTCGCAAAGTTGAAATTTTCTATTTTTCACTCCATCATCATGTCCATTTGTTTCATGGAACTTATG TTAAAAAGTCCCTTAAGTGGTTTGTTTAATGTGCAGTTCTTTCGTTAATTGACTTTTATCATAAATAAATCATCCAAATC ATGGGTTATAGTTCCTTTAATGGGGAAGGAAATGTTGTTTGCTGGCAATATGCAAAGTGACAGCCATTTTCATGTGAATC ATACTGCTGGACTATTTTTTATCTGTTGATTTGTTATCAACGCTGAATTATTTTCCATTTTTGTTGCACAAATCTCATTT TGATCTTATTGGAACTTTCCATACTAAAACAAAGTTTCCTGGCCAATCAGATCAAATAACTCCTGCGCCAGTAGAAAGTG CTGCCGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTTTTGACGTTTGCGATGAAAGAAATACCTTCAAA ATGGAATGCAGTTGCAAAGGTGACCTGACGTTGGTGCATGAAGAATGTTTAATTAAATGGTTTAGCTTAAAAGGAAACAA GAAATGTGATGTATGTGGGCAAGAAGTTCAGAATTTACCTGTAACCTTGCTTCGTGTGTCCAGCTCTGTTCGACAGAACA GACAGTCACAGAATCAGCAGAACCTACGTTCAGAGTCAATAAGGTGATTTGAAAGCCATGCTCTCAATTTAATTTATCCA TGTTATTTTTCTCTTCTTATTGGTGTCCCTTTTGGCATTGCATCATTACCTGTACAAAATTTCAAAATCTGTAGTTTTTT TTTTTATCATGGATACTTTATGCATAATTGATTATAGGTGTCCCTTTTAGCATTACATTACTTATACAAATTTCAAAATT TATATTCAGTGGTCTCTATTAGATATAAAACCAATCTTAAACCTTCACCGAATAACTTAAGCTTTCGGGAGGTATGCCAT TGACATGGTATTGGAGCCTCTATAATTACAGTATGATCCTTGCCATCTCCATTCTTTCTATATGAAAGTTAAGTTTCATC ACAAATGAAATGAGCTTGTGCATTTTCCATGCTTCAAGCCCAAAGTGCTCTTGCATGATGGGGCTTATTAAATATAAAAC CAATCTTAAACCTGCACCCAAGAGCTTAAGCTTTTACGGGAGTTGGTGTTTGACAACTTATTTGTACTCTCACTCTTAGT TCATCTTATATTTAAGTAATATTCATAATTCATCATTAGTAGTACTGCGAACAAAGTTCAAATTGGGAGACTCATTCGGC ACAAATTAATGGGTGTGATTCTATTCTCAAGCATTTAATCTCATCTATTCATGTTGAAGTCTTTTCAACTAATTTTTCTT ATCACTAATTTTTTATTAATACTGGTTGATATTTTTTTACAGTGCCTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCA CAATATGCTATTTTTTCTTCCTTGAACAGCTACTGGTATGCCTGTTACCCTTTCTAGAAAACTTCATCTAACATCTTTCA AAGAAGTACCGTGTCTGTCTGTATTATCTGAAAAAGTACAAAAAAGAGATTAGAGGAAGAGAGTAAGACAGAGTGACTCT GTTATTTCTTTTGTAGTGAGAAAAGAGAACAGGGTGGAGAAGCCACCTTACAAAGGTTTCCCCTTAACCTGAAAGACTCA TTTACTAAGTATTATTCCTGGATGGCCATACAACTCTACGTTTCCCACGATTTAATCTGTAACCCCCATAACGGCCTGAG TAGCAGACTTTTTAACCAACCAACTAACTCCTTGTTGTCTATTTCTTGTTGTATACAATTTCCAAACTGGTTTTCCCTGT TGAGACTTGTGTCTAACTTATTCACAGCACTATGTATTTTACTCCTGAGGGGAGGGGTGAACAAATAATAAGCAGTACCC ATGCATAACTATGATCACATATACCCTTCCCCAAAAGCAAAATGAAGTGGTACTACGATGTTCAATGTTCTGAGATGCTA TCAAATTTACTTTCATTTTCAGTCATTTCTATGTTCAGTAATTTATTTTGTATATTTCTTGCTGCATTTTTTAGCTTCCT GATTTGAAGACTCAAGCCATCATTATAGCAGGACCATTTGCCTTTACCTTGGGCCTCCTGGCATCTATTTTTGCAATCAT CCTTGGTATAACATCTGTATCAAAACTAAAATTGATTTTTATCTTGGGTTAAAACGATTGGTTTTTCTTTTAATGTTTTC TTATGTTGCTTGCAGCGATTAAAGAGTATATATGGACATACGCTGCACTTGAGTTCGCACTTGTGGCTATAACTGTGCAT ATATTTTATAGTATGGTAAGTGAGAATGTAGAGATTTCTTGTTATCATTTCGCAGGATTGATGCTATATAAATCAAATGC CTAATAATGGGGCAATGATTCTTGACTTCCTTCATTTCCTGAGCTGACTCTTCTTGTTTACTTCAAGTCTATTATCTTAC GAACTGCCATGATTAATACATGTTACTTTCTGCTTCCTCAGTTGCGAGTTGCAACTTTGCATGTATCTGCTGCATGCATG CATGCATCTTCCTACGAATAGATATTTTTTATGAGAATAGTAGTAGGTATAGCAGACTGTTGGCATCTATCTTCAAATTT ATTGCCTAGTCTCCTCTTTTGGCTTGCATATAATGAGTGTTATTTCTTTGGTAATTAAAAGAACCCTTACATCCCTGCTC TTTAGTTGATTACTTGACTGACTAAGTGTACCCTTGATGTGCTAAACCTTTGCGACTTTGTTGCAGTTTCACTTGACGGC CATTTATGCAATACTACTTTCATCAGTTTTGGGTTTTGGAATTTCTATGGGCATCAACTATTTGTATATCCAGTATGTCA CTTGGAGACTTCAGGTCACACACAATGATAGCCCAGTATGAGTCTCCTCAGAAAGGAAACAACTTCATGGATTTTCTTTG TACCTACTGACATGATGGCATTCTGTTAAAGGGTTTCTAATAGGAACCTTATGGTTGTTGATCAATGTATCTTTGCTAAA TAAACTTCATCAAGTGTAAATGCAGGAAAGCCAGTGAAACAGAATCTTTTAAGACATGGATCTTTTGGAATATTGTTAGA TGCCAAAGGAGAAACCCCTTCCTATAATGTTTTCTCCATATTTTTTGTCAAATATATACATGGATTAAATGATCGAATTA AGGACCATATTCCACTTGAATCTGTAATATTGATAAAATAGAAGTGCAACCAGCAAGACCTAAGGCAATAATTTATTGAC AATGAGGGTAATTACATATATTGTTCCATATTCTCTATACCTTTTTATTTGCTTTAGAACTATGAAGCAAAGTATCTTGA TAAATATGGGTGTGGATTCAGTTACTTCATAAGTAACTTTGTAAGTTGTAACCCTGGTCAAGTAATTTAGACCAATAACT TTTTCTCAGAATATGAATTTTTTGTGAAAGTAATTTCAG
CDS sequence (LotjaGi6g1v0304500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGCAACTCAACCATCACCCACTCATGAAGCTCCTCAGATTTCCCATCAGGCTGACAACCAGCTAAACAAAGAAGA TTCAGATAACAGACCTAGCGGGAAGCGTCCAGATATTTCACTTCAAGTTCCACCTAGACCTGCAGGATTTGGCACCACTA GTGGTGGAAAGGTTCTGAACCATTCTCAAAGTTTCTCCAAAGGGAACTCATCACCAAGAGGCTTTTTGCGGGCCTTAAGC TTCAAAAGAAAAGGAAATGTAACAGATGGCGAAAGAAGCAGCCTCCTTAATCCAGAACCCAAGACATCTGCAGACAATCC TAATATGGCCTCCATATCTGAAGTTCCATGGTCAAGGTGTACTTCTCTTCCCGTTACACCTGCAACAAATTTGTCCCCTG CAGTTTCTACGCCTATTTCCGCAAGGACATATAATGAACAGATTAAGCCACATAAAGATGTTGTTCGTGCTAAGGTTTCA AGGTCCCTTTCTGTACCTGGACGAAATGTAGTTATTGTAAGATCTGTCTCCTTCTCTACCCGTAATGAACAGGAACAACA AGATATAAATGATGATCAAATAACTCCTGCGCCAGTAGAAAGTGCTGCCGATGAAGAAATTCCTGAAGAGGAAGCAGTGT GCAGGATATGTTTTGACGTTTGCGATGAAAGAAATACCTTCAAAATGGAATGCAGTTGCAAAGGTGACCTGACGTTGGTG CATGAAGAATGTTTAATTAAATGGTTTAGCTTAAAAGGAAACAAGAAATGTGATGTATGTGGGCAAGAAGTTCAGAATTT ACCTGTAACCTTGCTTCGTGTGTCCAGCTCTGTTCGACAGAACAGACAGTCACAGAATCAGCAGAACCTACGTTCAGAGT CAATAAGTGCCTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACAATATGCTATTTTTTCTTCCTTGAACAGCTACTG CTTCCTGATTTGAAGACTCAAGCCATCATTATAGCAGGACCATTTGCCTTTACCTTGGGCCTCCTGGCATCTATTTTTGC AATCATCCTTGCGATTAAAGAGTATATATGGACATACGCTGCACTTGAGTTCGCACTTGTGGCTATAACTGTGCATATAT TTTATAGTATGTTTCACTTGACGGCCATTTATGCAATACTACTTTCATCAGTTTTGGGTTTTGGAATTTCTATGGGCATC AACTATTTGTATATCCAGTATGTCACTTGGAGACTTCAGGTCACACACAATGATAGCCCAGTATGA
Protein sequence (LotjaGi6g1v0304500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQATQPSPTHEAPQISHQADNQLNKEDSDNRPSGKRPDISLQVPPRPAGFGTTSGGKVLNHSQSFSKGNSSPRGFLRALS FKRKGNVTDGERSSLLNPEPKTSADNPNMASISEVPWSRCTSLPVTPATNLSPAVSTPISARTYNEQIKPHKDVVRAKVS RSLSVPGRNVVIVRSVSFSTRNEQEQQDINDDQITPAPVESAADEEIPEEEAVCRICFDVCDERNTFKMECSCKGDLTLV HEECLIKWFSLKGNKKCDVCGQEVQNLPVTLLRVSSSVRQNRQSQNQQNLRSESISAWQDFVVLVLISTICYFFFLEQLL LPDLKTQAIIIAGPFAFTLGLLASIFAIILAIKEYIWTYAALEFALVAITVHIFYSMFHLTAIYAILLSSVLGFGISMGI NYLYIQYVTWRLQVTHNDSPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 73 | 73 | - | – | |
| MobiDBLite | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 296 | 296 | - | – | |
| PANTHER | 10 | 421 | 412 | 1.9E-209 | – | |
| PANTHER | 10 | 421 | 412 | 1.9E-209 | – | |
| MobiDBLite | 55 | 73 | 19 | - | – | |
| MobiDBLite | 86 | 110 | 25 | - | – | |
| MobiDBLite | 90 | 110 | 21 | - | – | |
| Gene3D | 199 | 270 | 72 | 7.1E-16 | ||
| ProSiteProfiles | 206 | 267 | 62 | 21.173 | ||
| SUPERFAMILY | 210 | 264 | 55 | 3.18E-13 | – | |
| SMART | 213 | 261 | 49 | 7.4E-20 | ||
| Pfam | 214 | 260 | 47 | 2.4E-13 | ||
| CDD | 214 | 261 | 48 | 8.91825E-15 | – | |
| TMHMM | 294 | 316 | 23 | - | – | |
| Phobius | 297 | 316 | 20 | - | – | |
| CDD | 302 | 409 | 108 | 0.00221992 | – | |
| Phobius | 317 | 327 | 11 | - | – | |
| Phobius | 328 | 350 | 23 | - | – | |
| TMHMM | 329 | 351 | 23 | - | – | |
| Phobius | 351 | 355 | 5 | - | – | |
| Phobius | 356 | 375 | 20 | - | – | |
| TMHMM | 356 | 378 | 23 | - | – | |
| Phobius | 376 | 381 | 6 | - | – | |
| Phobius | 382 | 405 | 24 | - | – | |
| TMHMM | 383 | 405 | 23 | - | – | |
| Phobius | 406 | 421 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi6g1v0304500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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