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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0304500 |
| Transcript ID | LotjaGi6g1v0304500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT3G06330.1 RING/U-box superfamily protein; Swiss-Prot: sp|F4JKK0|SUD1_ARATH Probable E3 ubiquitin ligase SUD1; TrEMBL-Plants: tr|I1MF85|I1MF85_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0304500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62183014..62186928) extracted from Lotus japonicus Gifu genome v1.2.
TATGTGTTGTCTGAGTCTCTGAGGTGCTTTGACACATTATGTTACATTACATGCAGGCTGACAACCAGCTAAACAAAGAA GATTCAGATAACAGACCTAGCGGGAAGCGTCCAGATATTTCACTTCAAGTTCCACCTAGACCTGCAGGATTTGGCACCAC TAGTGGTGGAAAGGTTCTGAACCATTCTCAAAGTTTCTCCAAAGGGAACTCATCACCAAGAGGCTTTTTGCGGGCCTTAA GCTTCAAAAGAAAAGGAAATGTAACAGATGGCGAAAGAAGCAGCCTCCTTAATCCAGAACCCAAGACATCTGCAGACAAT CCTAATATGGCCTCCATATCTGAAGTTCCATGGTCAAGGTGTACTTCTCTTCCCGTTACACCTGCAACAAATTTGTCCCC TGCAGTTTCTACGCCTATTTCCGCAAGGACATATAATGAACAGATTAAGCCACATGTAAGTTCTCTTCCGTTTCATCACT TGCCTTGTAAAGGATTTTCAAAAGAAGAAAAATAATGCTAACAGTATCTCAAGCCTTGGACAAAGACAAATTCAGTGGTA AAAGTTATATTACACTCAGACATCAAGATATTGTATCAAACTCGTTACCAAAGATACTAAATATGTGCCTCTATCCAGAA AGGGGAAGATAAAACTGATCAGATTTGAAAATTTTATTAATGTATATTAAAAAGCATGATGATATACTCACAATTGCACT AAATTGAGGTTTGCCTGAAGAAGTTGAAGGATTTTTTTAGGAAAAGATTGATTGTGGTTAACTTTGTGCAGAAAGATGTT GTTCGTGCTAAGGTTTCAAGGTCCCTTTCTGTACCTGGACGAAATGTAGTTATTGTAAGATCTGTCTCCTTCTCTACCCG TAATGAACAGGAACAACAAGATATAAATGATGGTATGTTATGTCATTTACTCTATGCTATTACAGTTTCATATTCCTACT TTTTATCTATTTTAAATTCATATATATTCCTGAAGAAATCTAATACATTTCGCAAAGTTGAAATTTTCTATTTTTCACTC CATCATCATGTCCATTTGTTTCATGGAACTTATGTTAAAAAGTCCCTTAAGTGGTTTGTTTAATGTGCAGTTCTTTCGTT AATTGACTTTTATCATAAATAAATCATCCAAATCATGGGTTATAGTTCCTTTAATGGGGAAGGAAATGTTGTTTGCTGGC AATATGCAAAGTGACAGCCATTTTCATGTGAATCATACTGCTGGACTATTTTTTATCTGTTGATTTGTTATCAACGCTGA ATTATTTTCCATTTTTGTTGCACAAATCTCATTTTGATCTTATTGGAACTTTCCATACTAAAACAAAGTTTCCTGGCCAA TCAGATCAAATAACTCCTGCGCCAGTAGAAAGTGCTGCCGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATG TTTTGACGTTTGCGATGAAAGAAATACCTTCAAAATGGAATGCAGTTGCAAAGGTGACCTGACGTTGGTGCATGAAGAAT GTTTAATTAAATGGTTTAGCTTAAAAGGAAACAAGAAATGTGATGTATGTGGGCAAGAAGTTCAGAATTTACCTGTAACC TTGCTTCGTGTGTCCAGCTCTGTTCGACAGAACAGACAGTCACAGAATCAGCAGAACCTACGTTCAGAGTCAATAAGGTG ATTTGAAAGCCATGCTCTCAATTTAATTTATCCATGTTATTTTTCTCTTCTTATTGGTGTCCCTTTTGGCATTGCATCAT TACCTGTACAAAATTTCAAAATCTGTAGTTTTTTTTTTTATCATGGATACTTTATGCATAATTGATTATAGGTGTCCCTT TTAGCATTACATTACTTATACAAATTTCAAAATTTATATTCAGTGGTCTCTATTAGATATAAAACCAATCTTAAACCTTC ACCGAATAACTTAAGCTTTCGGGAGGTATGCCATTGACATGGTATTGGAGCCTCTATAATTACAGTATGATCCTTGCCAT CTCCATTCTTTCTATATGAAAGTTAAGTTTCATCACAAATGAAATGAGCTTGTGCATTTTCCATGCTTCAAGCCCAAAGT GCTCTTGCATGATGGGGCTTATTAAATATAAAACCAATCTTAAACCTGCACCCAAGAGCTTAAGCTTTTACGGGAGTTGG TGTTTGACAACTTATTTGTACTCTCACTCTTAGTTCATCTTATATTTAAGTAATATTCATAATTCATCATTAGTAGTACT GCGAACAAAGTTCAAATTGGGAGACTCATTCGGCACAAATTAATGGGTGTGATTCTATTCTCAAGCATTTAATCTCATCT ATTCATGTTGAAGTCTTTTCAACTAATTTTTCTTATCACTAATTTTTTATTAATACTGGTTGATATTTTTTTACAGTGCC TGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACAATATGCTATTTTTTCTTCCTTGAACAGCTACTGGTATGCCTGTT ACCCTTTCTAGAAAACTTCATCTAACATCTTTCAAAGAAGTACCGTGTCTGTCTGTATTATCTGAAAAAGTACAAAAAAG AGATTAGAGGAAGAGAGTAAGACAGAGTGACTCTGTTATTTCTTTTGTAGTGAGAAAAGAGAACAGGGTGGAGAAGCCAC CTTACAAAGGTTTCCCCTTAACCTGAAAGACTCATTTACTAAGTATTATTCCTGGATGGCCATACAACTCTACGTTTCCC ACGATTTAATCTGTAACCCCCATAACGGCCTGAGTAGCAGACTTTTTAACCAACCAACTAACTCCTTGTTGTCTATTTCT TGTTGTATACAATTTCCAAACTGGTTTTCCCTGTTGAGACTTGTGTCTAACTTATTCACAGCACTATGTATTTTACTCCT GAGGGGAGGGGTGAACAAATAATAAGCAGTACCCATGCATAACTATGATCACATATACCCTTCCCCAAAAGCAAAATGAA GTGGTACTACGATGTTCAATGTTCTGAGATGCTATCAAATTTACTTTCATTTTCAGTCATTTCTATGTTCAGTAATTTAT TTTGTATATTTCTTGCTGCATTTTTTAGCTTCCTGATTTGAAGACTCAAGCCATCATTATAGCAGGACCATTTGCCTTTA CCTTGGGCCTCCTGGCATCTATTTTTGCAATCATCCTTGGTATAACATCTGTATCAAAACTAAAATTGATTTTTATCTTG GGTTAAAACGATTGGTTTTTCTTTTAATGTTTTCTTATGTTGCTTGCAGCGATTAAAGAGTATATATGGACATACGCTGC ACTTGAGTTCGCACTTGTGGCTATAACTGTGCATATATTTTATAGTATGGTAAGTGAGAATGTAGAGATTTCTTGTTATC ATTTCGCAGGATTGATGCTATATAAATCAAATGCCTAATAATGGGGCAATGATTCTTGACTTCCTTCATTTCCTGAGCTG ACTCTTCTTGTTTACTTCAAGTCTATTATCTTACGAACTGCCATGATTAATACATGTTACTTTCTGCTTCCTCAGTTGCG AGTTGCAACTTTGCATGTATCTGCTGCATGCATGCATGCATCTTCCTACGAATAGATATTTTTTATGAGAATAGTAGTAG GTATAGCAGACTGTTGGCATCTATCTTCAAATTTATTGCCTAGTCTCCTCTTTTGGCTTGCATATAATGAGTGTTATTTC TTTGGTAATTAAAAGAACCCTTACATCCCTGCTCTTTAGTTGATTACTTGACTGACTAAGTGTACCCTTGATGTGCTAAA CCTTTGCGACTTTGTTGCAGTTTCACTTGACGGCCATTTATGCAATACTACTTTCATCAGTTTTGGGTTTTGGAATTTCT ATGGGCATCAACTATTTGTATATCCAGTATGTCACTTGGAGACTTCAGGTCACACACAATGATAGCCCAGTATGA
CDS sequence (LotjaGi6g1v0304500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTACATTACATGCAGGCTGACAACCAGCTAAACAAAGAAGATTCAGATAACAGACCTAGCGGGAAGCGTCCAGATAT TTCACTTCAAGTTCCACCTAGACCTGCAGGATTTGGCACCACTAGTGGTGGAAAGGTTCTGAACCATTCTCAAAGTTTCT CCAAAGGGAACTCATCACCAAGAGGCTTTTTGCGGGCCTTAAGCTTCAAAAGAAAAGGAAATGTAACAGATGGCGAAAGA AGCAGCCTCCTTAATCCAGAACCCAAGACATCTGCAGACAATCCTAATATGGCCTCCATATCTGAAGTTCCATGGTCAAG GTGTACTTCTCTTCCCGTTACACCTGCAACAAATTTGTCCCCTGCAGTTTCTACGCCTATTTCCGCAAGGACATATAATG AACAGATTAAGCCACATAAAGATGTTGTTCGTGCTAAGGTTTCAAGGTCCCTTTCTGTACCTGGACGAAATGTAGTTATT GTAAGATCTGTCTCCTTCTCTACCCGTAATGAACAGGAACAACAAGATATAAATGATGATCAAATAACTCCTGCGCCAGT AGAAAGTGCTGCCGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTTTTGACGTTTGCGATGAAAGAAATA CCTTCAAAATGGAATGCAGTTGCAAAGGTGACCTGACGTTGGTGCATGAAGAATGTTTAATTAAATGGTTTAGCTTAAAA GGAAACAAGAAATGTGATGTATGTGGGCAAGAAGTTCAGAATTTACCTGTAACCTTGCTTCGTGTGTCCAGCTCTGTTCG ACAGAACAGACAGTCACAGAATCAGCAGAACCTACGTTCAGAGTCAATAAGTGCCTGGCAAGACTTTGTGGTGCTTGTCC TGATAAGCACAATATGCTATTTTTTCTTCCTTGAACAGCTACTGCTTCCTGATTTGAAGACTCAAGCCATCATTATAGCA GGACCATTTGCCTTTACCTTGGGCCTCCTGGCATCTATTTTTGCAATCATCCTTGCGATTAAAGAGTATATATGGACATA CGCTGCACTTGAGTTCGCACTTGTGGCTATAACTGTGCATATATTTTATAGTATGTTTCACTTGACGGCCATTTATGCAA TACTACTTTCATCAGTTTTGGGTTTTGGAATTTCTATGGGCATCAACTATTTGTATATCCAGTATGTCACTTGGAGACTT CAGGTCACACACAATGATAGCCCAGTATGA
Protein sequence (LotjaGi6g1v0304500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLHYMQADNQLNKEDSDNRPSGKRPDISLQVPPRPAGFGTTSGGKVLNHSQSFSKGNSSPRGFLRALSFKRKGNVTDGER SSLLNPEPKTSADNPNMASISEVPWSRCTSLPVTPATNLSPAVSTPISARTYNEQIKPHKDVVRAKVSRSLSVPGRNVVI VRSVSFSTRNEQEQQDINDDQITPAPVESAADEEIPEEEAVCRICFDVCDERNTFKMECSCKGDLTLVHEECLIKWFSLK GNKKCDVCGQEVQNLPVTLLRVSSSVRQNRQSQNQQNLRSESISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIIIA GPFAFTLGLLASIFAIILAIKEYIWTYAALEFALVAITVHIFYSMFHLTAIYAILLSSVLGFGISMGINYLYIQYVTWRL QVTHNDSPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 61 | 61 | - | – | |
| Phobius | 1 | 284 | 284 | - | – | |
| PANTHER | 7 | 409 | 403 | 1.2E-208 | – | |
| PANTHER | 7 | 409 | 403 | 1.2E-208 | – | |
| MobiDBLite | 43 | 61 | 19 | - | – | |
| MobiDBLite | 74 | 99 | 26 | - | – | |
| MobiDBLite | 78 | 99 | 22 | - | – | |
| Gene3D | 187 | 258 | 72 | 6.8E-16 | ||
| ProSiteProfiles | 194 | 255 | 62 | 21.173 | ||
| SUPERFAMILY | 198 | 252 | 55 | 3.05E-13 | – | |
| SMART | 201 | 249 | 49 | 7.4E-20 | ||
| CDD | 202 | 249 | 48 | 9.84846E-15 | – | |
| Pfam | 202 | 248 | 47 | 2.3E-13 | ||
| TMHMM | 282 | 304 | 23 | - | – | |
| Phobius | 285 | 304 | 20 | - | – | |
| CDD | 290 | 397 | 108 | 0.00408196 | – | |
| Phobius | 305 | 315 | 11 | - | – | |
| Phobius | 316 | 338 | 23 | - | – | |
| TMHMM | 317 | 339 | 23 | - | – | |
| Phobius | 339 | 343 | 5 | - | – | |
| TMHMM | 344 | 366 | 23 | - | – | |
| Phobius | 344 | 363 | 20 | - | – | |
| Phobius | 364 | 369 | 6 | - | – | |
| Phobius | 370 | 393 | 24 | - | – | |
| TMHMM | 371 | 393 | 23 | - | – | |
| Phobius | 394 | 409 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi6g1v0304500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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