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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0306400 |
| Transcript ID | LotjaGi6g1v0306400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CASP-like protein; TAIR: AT3G06390.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6SVQ5|CSPL7_SOYBN CASP-like protein 1D2; TrEMBL-Plants: tr|A0A151T767|A0A151T767_CAJCA CASP-like protein; Found in the gene: LotjaGi6g1v0306400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62359807..62361587) extracted from Lotus japonicus Gifu genome v1.2.
TTTCAATTGGCTCCCCAAAATTTCAAATCCACAAACACACACACTCAGAATATATATTCCTTCTCAACCATCTGTGCCCT GCATCTCTCAGTTGCAACTAGCTAGTCTCACTAAGCAACTACTAGTACCTTTCATTCAAGTCAAGTTCACCAGATACCTT GGTGAGGACTTCATGGCTTCAACAGAGTCTGACCCTGAGCACAAATCATCTTCAACTCCACCACCTCCTCCGGCCGGCGG TGTGGACTACTTTAAATTCGACGTGATCCTCAGATTCCTGTTATTGGCCGCATCAGTAGTGGCGCTTGCAGTGATTACCT CCAGTGACCAAACAGAGCTAGTGCTATTCCAAGGAAGGCCTGTGCTACAGCCAGCCAAGTTCAAATACTCACCAGCTTTT ATGTAAGTTGAGAATCATTCAAATTCTCTGCAATTTTACTCACCAGCTTTTATGTAAGTTGAGAATCATTCAAATTCTCT GCAAATTTTACTTTGTTTATTGCAAAATTCTCTTCTTTTCAAAATCAAGTTCAAAAGCTTCTTAGATATATGCTTGTCTA TATTTATTTATTTGCAAAATGATATCAATCAAATATCTCGATAATAGAAGAATCAATGATAAAAAACCTCTAAATGAATT TGAAGCATACCAACTTTTTAAAATCAGAAAATTCCTTAATTCCTTGAAGAGTTTTTCCCCTTAATTTTTTTTTCAGTTGA GTAGCTAGGGGTGTGGAAGCATTGAAATTTTCGCTTCTTCTTCCAGCTACATGGAAATAAGTTTAGAAATCAGCCTCTTG TCTTGGTTACTCTAAAGATCAGGGATGTAATAATATGTTGGCCTTTCTTGAGCATGCAAGTTTAGTAGCAAAATTGAATA GCTGCAGATTCTATTAACAGATTTACGAGTGAAAAGGTATAAGTCAATAACCGTTGTGCTTATGGCAATTTGTGTGTGTG TTTCTTTCCTCTGTTCCTGATGTCATGCTCCTCAAGTCTTTTCTTTTTAAATTTAAAAGGTCAAAAGTCTGAAATACATT TATGATTTATTATAAAGCCTCATTTTTGTTTACATCTTTTTTTCCCTGTCAAACAAGTCTTCTATGTTAAGATTTTTAAT TTGACACATAATATGGTATGCATGCAGATATTTTGTGGTTGCATTCTCTGTTTCTGGCCTTTATGCCCTTATTTCTGCTC TTGCATCTATCTCTGTCATCCAGAAGCCAGAATTCAAATTGAAGTTCCTCCTCCACTTTATCTTCTGGGATGCGGTAACT AATCAATTAACCTTTTATTCCACCATGCTATTCATCTTCTATTCTCAAATCTCTTGATTTTTTATATATATCAAAGTATC ATAAGGTAAATTGTTCACTATGGCTTTGTGCAGCTGATACTGGGGATAACAGCCTCAGCAACAGGAGCAGCTGGGAGTGT CGCATATATCGGTTTAAAGGGAAACAGCCATGTGGGTTGGAGTAAAGTTTGCAATGTTTATGATAAGTTCTGTAGGCATC TCGGTGGTTCAATAGCAGTGGCATTGTTTGGCAGCATTGTGACTGTGTTGCTCGTATGTCTTTCAGCTTACACCATTCAC AGTCGCGTCCCCAAGTAAATTGAAGGAGTATGGACAATTCAGTGTGTCAAGTTGATATTCTTAGATTGATGTGAATAACT TCATGAGTTGTGTTTTTTTTAGTGTTGATTATTTGTAAATGATGGCCTCCATGGCTCGCCAGTTATAATTTGCATTATGG TCATTTTGAAAATGGTGCCTC
CDS sequence (LotjaGi6g1v0306400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAACAGAGTCTGACCCTGAGCACAAATCATCTTCAACTCCACCACCTCCTCCGGCCGGCGGTGTGGACTACTT TAAATTCGACGTGATCCTCAGATTCCTGTTATTGGCCGCATCAGTAGTGGCGCTTGCAGTGATTACCTCCAGTGACCAAA CAGAGCTAGTGCTATTCCAAGGAAGGCCTGTGCTACAGCCAGCCAAGTTCAAATACTCACCAGCTTTTATATATTTTGTG GTTGCATTCTCTGTTTCTGGCCTTTATGCCCTTATTTCTGCTCTTGCATCTATCTCTGTCATCCAGAAGCCAGAATTCAA ATTGAAGTTCCTCCTCCACTTTATCTTCTGGGATGCGCTGATACTGGGGATAACAGCCTCAGCAACAGGAGCAGCTGGGA GTGTCGCATATATCGGTTTAAAGGGAAACAGCCATGTGGGTTGGAGTAAAGTTTGCAATGTTTATGATAAGTTCTGTAGG CATCTCGGTGGTTCAATAGCAGTGGCATTGTTTGGCAGCATTGTGACTGTGTTGCTCGTATGTCTTTCAGCTTACACCAT TCACAGTCGCGTCCCCAAGTAA
Protein sequence (LotjaGi6g1v0306400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTESDPEHKSSSTPPPPPAGGVDYFKFDVILRFLLLAASVVALAVITSSDQTELVLFQGRPVLQPAKFKYSPAFIYFV VAFSVSGLYALISALASISVIQKPEFKLKFLLHFIFWDALILGITASATGAAGSVAYIGLKGNSHVGWSKVCNVYDKFCR HLGGSIAVALFGSIVTVLLVCLSAYTIHSRVPK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| PANTHER | 9 | 191 | 183 | 3.6E-72 | – | |
| PANTHER | 9 | 191 | 183 | 3.6E-72 | – | |
| Pfam | 29 | 174 | 146 | 5.3E-34 | ||
| TMHMM | 31 | 50 | 20 | - | – | |
| Phobius | 31 | 49 | 19 | - | – | |
| TIGRFAM | 31 | 185 | 155 | 4.1E-43 | ||
| Phobius | 50 | 74 | 25 | - | – | |
| Phobius | 75 | 98 | 24 | - | – | |
| TMHMM | 75 | 97 | 23 | - | – | |
| Phobius | 99 | 109 | 11 | - | – | |
| Phobius | 110 | 140 | 31 | - | – | |
| TMHMM | 110 | 132 | 23 | - | – | |
| Phobius | 141 | 165 | 25 | - | – | |
| TMHMM | 165 | 187 | 23 | - | – | |
| Phobius | 166 | 187 | 22 | - | – | |
| Phobius | 188 | 193 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0306400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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