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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0310000 |
| Transcript ID | LotjaGi6g1v0310000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G26900.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protein At1g26900, mitochondrial; TrEMBL-Plants: tr|G7IPV3|G7IPV3_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi6g1v0310000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62876894..62880974) extracted from Lotus japonicus Gifu genome v1.2.
GTTGCTAATATCTCGTTTTACCTAAAGCACAAGCTTCAACCTACGCAGGAGCGGACTTGGTCCCTGAAATTTTCACCCGC CGCCGCGCAGCCTCTCTCTCAGACTCTCACGCCAGTGATTAGTGAACGCGGGTTTAGGGTTTCCGTTCTGCTGCTGTTGC TTCCATGGATTATAATTTTGTACCTACCTTCTTCATTGTCGTTTATGGATTCTAATTTTGTTTCAAGCACATAAATTCAA TTTTCCCAGATGGAACAGTTTCAGTGGCTACTGCTTTTGCTGGTCACCAGGAAGGTAATGCTTCTGCACATAATATTCTG CTTGGTTCAGTTTAGTTATTTCAGAATCTTAATCTTATCATATCATTTCATTTGGTGGAAACCTGAGTTTATGATTTATA TTGGTGAACATTAGGCTTCATAAGCAAACCATATATCAAATCCTTCATAGCCCCTATATTTATATCAGTAAATTATTCAC ATTAGGTGCACTGCAAGTGCAAATGTGAAATGTTTTGAATCAATGGATTATGGAATGGAACCATGCTGGCTTGCTGCAAT GTTTTGATTGAATCAATGGTAAAATAATGAGTCTTTTTTTATTTCAGTTTATAGCTATTTATATATTGTGGCACATGTTG ATTTGCGGCTCTAAAATTTTCCTAGGCTTCACAAAATTTCTGGTTCTGCCTCTAAACCTATGACAACATGCATTGCATCA CAAACACCACTCTTGCATTGTTGAACTCATGCGAAAACACCTCTGATATTCGTCAAGTTCATGCCCGCATGGTCAGGACC GCTCTCACCAACGTTCCTTTCACTCTCAGCAAGCTTCTCTATGCTTCCATTCTCGACATGGACTATGCAGCTTCCATTTT CAGCGACATTCAAAACCCGAATCTATTCAGGTTCAACACAATGCTCAGAGGCTATTCAATCAGCAATTGCCCCAATAAAG CTTTGCCCATTTTCAATCAACTCAGGAATCAAAGGAGTGAGCTTGACCAGTTCTCTTTCGTCACGGTGCTCAAAGCGTGT GGTCGAGGTTCTCAGGTTAGTTTTGGCCAAGGGGTCCATGGGATTGCGGTGAGGTATGGGAATGAGATGTTTGTTGATGT TAAGAATACCCTTTTGTCGTTTCTATTGTGTTTGTAGAAGAATTGAAGATGCACATAAGCTGTTTGATGAGTTTCCTGAA GGAAATGACTTGGTCTCTTGGAACACTTTGATGGGTGGGTGTCTTGTTGTGTCTCAGCCTAATTCGGTTTTTGATTTGTT TACGAAGATGTGTTGGAGTGGGCTTAGAGCTAGTGCTGCCACCGCCTTGATCCTTTTGCCAGCAGCTGGTGATACATGGA ACTTTGTTGTTGGGAAGTCCCTCCATGGTTACTGTATCCAAATTGGACTTAGTTCTCATTTAAATGTCCTTACTGCATTG ATAGATATGTATGCGAAAACAGGACTTGTGCATTGGGGGCGTAAGATTTTTGATGGTCTTGTTGATAAGGATGTTGTCTT ATGGAATTGTTTAATAGGAAATTATGCAAGGAATGGTCTGGTAGGAGAAGCGGTGTATTTATTACAGCAAATGAGAATTC AAGGAATGAAAACTAATTCTTCTACCTTTGTGGGGCTGCTTTCAGCTTGCCCTGCATCCGGATCTATACATCTAGTTCGT CACGTTACTAGTTTTATTGAAGAGGAGAAACTACAACTGGATGCAGTTCTGAGAACAGCTCTTGTTGATATGTGTGCTAA ATGTGGCTTTCTAGATGAGTCTATGGGCATATTTGAGAGGATGGAAGATAAAGATGTGAAGTCTTGGACAGCCATGATTT CAGGTTATGGAGTTCATGGCCAGCCAACTAAGGCCATTAGGCTTTTCAATAGGATGGAGAATGAGGGGTTTAGACCAAAT GGAGTCACCTTTTTGGCAATTTTGACTGCTTGTAGTCATGGAGGACTTGTAATTGAGGGGATGGATATTTTTAAGCGCAT GGTTCAGGAATATGGCTTTTCACCACAGATTGAGCATTATGGATGCCTTATTGATCTCTTGGGTCGTGCAGGAATGCTAC ATGAAGCATATAAACTAATCAAGAACTTGCCAATTAAGGGTGATGCTACTGCATGGCGTACGCTGCTTTCTGCTTGCCGA GTCTATGGAGATGTTAAATTGGCGGAGTGTGTGAAAGATGTCTTAGACAACATTTATGCAGTGCGTCCAACAGATTCCCT CCTCATTTCAAGCACTTATGCAGTTGCTGGAAGAATCTCAGATCTTATACCAAAGCAAGAAATAAAACAAACAAATGTTA TAGTAGAAAATTATGGGTTACATGAAAAAAAGGGAGGAAGTACAGTAAAGGAAGCTGGACTCAGGAGGGTTGTAATTGAT AATTAGGGATAAGAATACTATAGGTTCACCAACAAGCAATATCTCTATTACACAAAATGGTGGCCTCTATTGTGCACGAA AACTGCAAATGCAAAGTCTGATTACGTTAGGTTGACTGTATTAGTTCTTTCTTCAATTGCTTTTGTTGGTTTTGACTTTT GACCATATATAAGATTTTAATCTTTATGTTGAAATTTATTCACTAGTTAGAAACTGAGAATGGGGACGGAGAGCGAAGCA CTGGAATCATTTAAGGATTTGGGCTCATCCATTGGCAGAAGCATCTGAAATTCTGGATTCAAAAAATCCATTAAAGATAC AGACAGAAGCAATTCCTCTTGTGAGGGCAGGTTAGTTTTATCTTTATTGTTTTGATTAGAAATTTTAGTCAGAGTTTTGT TGAATGTATGATTTCTCTTCTTTAGAGATATATTGCTTAATGATCATATTTATTGGACTGAATTCTAACCGTCAGTGTTT TATGAGATTGCTGACACAGAGTCTACTGTCAAAGGAAGTCGCAAGCTTGAACACACAAATGAGTTAAGGTAAACAAATAT TTACAAATTTCTCCATGACCAATTTATGTTTTTTTATTGCTCAGAATCAGAAGCAATTTTGATGTCATATTTGAATCTTT AGAGATACCCATTATATACCTCTTCTAATTCATTATTCTTCATTCGATGTTATATCCCTCTATTTGTTGTCAGGAGATAT TTTTACTAACTACCCTTGTCATTTTTCTGGTGTTCAGGAAAGAGGATGTGTCCATGTCAGTTTATCATGGTGATCATGCT AAGGCTCTGTTTATGTTGTAGCTGAGGCGTTTCTATGGAGTCATTCGGTTTAGGTAGCTTTTTGATTGACGAAGGAAGTA GGTGAAGGTGGTGTGAAGATTGAAGAAGGAAGATTCAATGGGAAGATGGTGATGGCAGGATGTGTTTTTTCAGTTTATGT ATTAGAAGGAGGAGGACTAGTAATGAGATGAAGGTTGCTTGGATGGAGATGGTGTTGAGTTGACGGAATGAAAATGGGTG AGGATGGAAGATGATGTTGGAGATGGAGGTTTTTTGGGTGGTCAAAGGTTTCCCCCTTTCTTTATAGACTCGCAAGGATC ATAAGAGTGTGGAGTGTGAGAGCTACAACATGAGTACATGACACAGGGATGAGTCCCTTTCTGTATCCGCTCTCTTTTCA TTTACTACGTTTTATGATGAGGCCATAAAACATGTACTTAGTCTGGAAATTGCAAAGGGGTTCAACGGCATTTAAAGGAC AATAATTAGATTCCAATGTTATGACGAGGCCATAGAAAATGTACTTAGTCTGTTGTTTGTTCAAAAAGTGAAACATACTT GTACAATAAGCATTGCAAATATGTACAAAATATAGGCAAAGGCTATGTTACAACAGTTATTAGGTCCAATGATATAATAT TAAATGGCTGAGATCAAATGAATAAAATGAAAGAAATACCCTCTAATCGGGAATTGGGTTTGCCACCCCATCTATTGGGT TTGGCACCTCACTTTATTCAATACGGGAATTAAATTTCCGTATTCAATACGGAATTTAAAATTTCGTATTTTTTTGTATG CAATGAATGGTTGAAAATGTGTCACATATGCTCAAATACAGTACGATTTTTTAAGTTCCGTATTATTCGTATTAAATACA G
CDS sequence (LotjaGi6g1v0310000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAATGAGATGTTTGTTGATGTTAAGAATACCCTTTTGTCGTTTCTATTGTGTTTGTAGAAGAATTGAAGATGCACA TAAGCTGTTTGATGAGTTTCCTGAAGGAAATGACTTGGTCTCTTGGAACACTTTGATGGGTGGGTGTCTTGTTGTGTCTC AGCCTAATTCGGTTTTTGATTTGTTTACGAAGATGTGTTGGAGTGGGCTTAGAGCTAGTGCTGCCACCGCCTTGATCCTT TTGCCAGCAGCTGGTGATACATGGAACTTTGTTGTTGGGAAGTCCCTCCATGGTTACTGTATCCAAATTGGACTTAGTTC TCATTTAAATGTCCTTACTGCATTGATAGATATGTATGCGAAAACAGGACTTGTGCATTGGGGGCGTAAGATTTTTGATG GTCTTGTTGATAAGGATGTTGTCTTATGGAATTGTTTAATAGGAAATTATGCAAGGAATGGTCTGGTAGGAGAAGCGGTG TATTTATTACAGCAAATGAGAATTCAAGGAATGAAAACTAATTCTTCTACCTTTGTGGGGCTGCTTTCAGCTTGCCCTGC ATCCGGATCTATACATCTAGTTCGTCACGTTACTAGTTTTATTGAAGAGGAGAAACTACAACTGGATGCAGTTCTGAGAA CAGCTCTTGTTGATATGTGTGCTAAATGTGGCTTTCTAGATGAGTCTATGGGCATATTTGAGAGGATGGAAGATAAAGAT GTGAAGTCTTGGACAGCCATGATTTCAGGTTATGGAGTTCATGGCCAGCCAACTAAGGCCATTAGGCTTTTCAATAGGAT GGAGAATGAGGGGTTTAGACCAAATGGAGTCACCTTTTTGGCAATTTTGACTGCTTGTAGTCATGGAGGACTTGTAATTG AGGGGATGGATATTTTTAAGCGCATGGTTCAGGAATATGGCTTTTCACCACAGATTGAGCATTATGGATGCCTTATTGAT CTCTTGGGTCGTGCAGGAATGCTACATGAAGCATATAAACTAATCAAGAACTTGCCAATTAAGGGTGATGCTACTGCATG GCGTACGCTGCTTTCTGCTTGCCGAGTCTATGGAGATGTTAAATTGGCGGAGTGTGTGAAAGATGTCTTAGACAACATTT ATGCAGTGCGTCCAACAGATTCCCTCCTCATTTCAAGCACTTATGCAGTTGCTGGAAGAATCTCAGATCTTATACCAAAG CAAGAAATAAAACAAACAAATGTTATAGTAGAAAATTATGGGTTACATGAAAAAAAGGGAGGAAGTACAGTAAAGGAAGC TGGACTCAGGAGGGTTGTAATTGATAATTAG
Protein sequence (LotjaGi6g1v0310000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGMRCLLMLRIPFCRFYCVCRRIEDAHKLFDEFPEGNDLVSWNTLMGGCLVVSQPNSVFDLFTKMCWSGLRASAATALIL LPAAGDTWNFVVGKSLHGYCIQIGLSSHLNVLTALIDMYAKTGLVHWGRKIFDGLVDKDVVLWNCLIGNYARNGLVGEAV YLLQQMRIQGMKTNSSTFVGLLSACPASGSIHLVRHVTSFIEEEKLQLDAVLRTALVDMCAKCGFLDESMGIFERMEDKD VKSWTAMISGYGVHGQPTKAIRLFNRMENEGFRPNGVTFLAILTACSHGGLVIEGMDIFKRMVQEYGFSPQIEHYGCLID LLGRAGMLHEAYKLIKNLPIKGDATAWRTLLSACRVYGDVKLAECVKDVLDNIYAVRPTDSLLISSTYAVAGRISDLIPK QEIKQTNVIVENYGLHEKKGGSTVKEAGLRRVVIDN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 13 | 92 | 80 | 1.2E-8 | ||
| ProSiteProfiles | 38 | 72 | 35 | 8.67 | ||
| Pfam | 40 | 69 | 30 | 0.0098 | ||
| PANTHER | 81 | 194 | 114 | 2.1E-82 | – | |
| Gene3D | 93 | 209 | 117 | 6.5E-17 | ||
| ProSiteProfiles | 108 | 138 | 31 | 5.766 | ||
| Pfam | 138 | 185 | 48 | 4.8E-9 | ||
| ProSiteProfiles | 139 | 173 | 35 | 10.611 | ||
| TIGRFAM | 141 | 173 | 33 | 1.9E-6 | ||
| ProSiteProfiles | 174 | 208 | 35 | 5.426 | ||
| ProSiteProfiles | 209 | 239 | 31 | 8.605 | ||
| PANTHER | 211 | 395 | 185 | 2.1E-82 | – | |
| Gene3D | 214 | 422 | 209 | 3.8E-37 | ||
| Pfam | 239 | 287 | 49 | 4.9E-11 | ||
| ProSiteProfiles | 240 | 274 | 35 | 12.825 | ||
| TIGRFAM | 243 | 275 | 33 | 5.0E-9 | ||
| ProSiteProfiles | 275 | 310 | 36 | 8.374 | ||
| TIGRFAM | 277 | 310 | 34 | 0.0024 | ||
| ProSiteProfiles | 311 | 345 | 35 | 7.256 | ||
| Pfam | 314 | 337 | 24 | 0.014 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0310000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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