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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0310300 |
| Transcript ID | LotjaGi6g1v0310300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/kelch-repeat protein family; TAIR: AT1G30090.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9C6Z0|FBK17_ARATH F-box/kelch-repeat protein At1g30090; TrEMBL-Plants: tr|A0A151RWB9|A0A151RWB9_CAJCA F-box/kelch-repeat protein family; Found in the gene: LotjaGi6g1v0310300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62911391..62915572) extracted from Lotus japonicus Gifu genome v1.2.
CAAACTAATCCATATTGTGATTGAATCGTGGAGTGGGGTGAAACAAACATGACGCATGAATCATGATCAACTAAACTGGA TTACGCGTGATGAAGCAGCATGGTTAACTTTAGATATATCTTGGACCCTTGGTTTGGTTGGTTCACATTCCTTTTACTAC TTTTCCGTCCCAAACCAGTAACCCATGAATAAAGCGCGTGCGTTTCTTTCTTTCTTTCTTTCTTTCTTTGCATGAACCTG CTCTCAGTTCTGTTCTGTTCTGCTCTGCTGGCACAATTTCCTGTCTTTAACTCCCTGACTTCAACTTCAATCTTAATCTC TGTTGCCACCACTTCCTTGCTTGCTTCTTCTTGTAAGTTTTGTGTTTTTCACTCTTCAATATTTTTTGCTACCGACATAG ATTCATTCCCTGTTGTTTTTCTTATAATCCAGAATTTTTATGTGGGAATCTTTAGTCTTATGATTTTTTCTTACTTATAT TTCAGATAAAGCTAGGATTTTTATTTATTTCCTGCTTCAGAGTTGTTGTTGGGTACTTGGGTTTAAGGGACCTGTGAATT ATTGGGTTATTTGAGGTTGGTTGGTATATTTGTTGGAGAAAGTTACGGCTTTTTGGATTCCCAAGTTGAAATATTGATGA TGAGTCTTGCTTTGTTTGTGGTTAAGTAACTGCTAGCTTTTGATGAAGAAAGTAGGAAGGTCCCAATTTCTGTTATGAGT AAAGTTGGATACTTTAACAAGGGGGAATCAGAAATTCTATTTATGTTGTATTCTATCAGCTTTTAGATCATTGTGGAGGA GGAATTGGTGCTTCTTCTCTTTATTCTGGATTGGGATTTAGGGATTCCTTTTATCTTCAGTAAAAATTTGTGGGGTGGAA TCATTTCAAGCTAATTAGGAATAGGTTCTCTCAGTGCCTTAATTGAAAATTGAGTGTTACTATCTGATATGATGTTATTC AAACCCATTTGAGAACATAGGAGGAACTAGGAATTTCATATTAGAGAAAGTGACAAGTTTTTGTGTTTCTGAAGGGTTTA GGTGTATTTAAAGATAAAGATGCAGCGTGTTAGATTTTCATCTCAACAAGCACCGGTACATAAGCTAGGAGATCCTCAAA TGACTCTATCTCCTAAGTTTAGGTTAGCTGTGATGCAATCTTCATTGGCAAATCCACCGCCGGAGTTGGAGCTTTCTCTC AGAGAAGAGCCGTTAATACCGGGGCTTCCTGATGATGTTGCTCTTAACTGTCTTCTTCGTCTTCCGGTACAGAGTCATTC ATCATGTAGAGCTGTCTGCAAGAGGTGGCATCTGCTACTTGGTAATAAGGAGAGGTTTTTTACCAACAGGAAGCAATTGG GTTTCAAAGACCCTTGGCTTTTTGTATTTGCCTACCATAAGTGCACTGGGAAGATCCAGTGGCAGGTTCTTGATCTTACT CACTTTTCTTGGCACACTATCCCTGCGATGCCTTGTAAGGACAAGGTTTGTCCTCATGGTTTTAGGTGTGTTTCGATTCC ACACGACGGCACTCTCTTTGTGTGCGGTGGTATGGTCTCTGATGTGGATTGCCCTCTTGACTTGGTGTTGAAATATGAGA TGCAGAAAAACCGTTGGACTGTGATGAATAGGATGATTACTGCTAGGTCATTTTTCGCCAGTGGATTGATTGATGGGATG ATTTATGTAGCTGGGGGTAATAGTACTGATCTTTATGAGCTAGATTCTGCAGAGATGTTGGATCCTCTCAACGGGAATTG GCGCTCTATTGCGAGCATGGGGACGAATATGGCATCCTATGACGCTGCGGTTCTCAATGGTAAACTTCTAGTGACAGAAG GCTGGTTATGGCCATTTTATGTCTCTCCGAGAGGCCAGGTGTATGATCCAAGGACTAATAACTGGGAAAGTATGGCTGTT GGGCTGAGAGAAGGGTGGACTGGTTCAAGTGTGGTTGTTTATGGGCACTTATTTGTTGTTTCTGAGCTCGAAAGGATGAA GCTTAAGGTTTACGACCCGGAAACGGATTCATGGGAAGCCATAGAGGGTCCCCCTTTGCCTGAGCAAATATGTAAGCCTT TTGCTGTGAATGCTTGCGATTGTCAAATTTATGTTGTGGGTCGAAATCTTCTGGTTGCTGTTGGTCATATTTCTAGATTG AATCTGAAAGAAAGTTGTGAGGGAAAACGGAAATTCAGCGTCCAATGGCATGTAATTGACGCGCCAGAAAGTTTATCTGA TCTGACTCCTTCAAGCTCCCAGGTGTTGTTTGCATAGTTTTTCATTATTATGTAATATTATGCTATGAATCTTGTCTGAA TAAAATGTAATTAAGTATAATTATTAGAGGTCTAAAAGTTGTAATAGCAGTGTGAAGGAGTGCTTTAAGCGGTTTTTGAA TTGTATTAATTGTAGCTGTGTAGCATCTTCTTGTGGTTCTTGGGCTATGTTAATATGTTGATATTTTATCCTTGAAGAAC ATCTTATGGGCATGATTTTATCATCACAAGTTGTAGCGATGTTTTTTTGCCAATCCATATTACATTCAATTTTTAAGGAC TAGAGTAAGATCTAACTTGTTTGTGTAGGCTTTTTCTTTGTCAATCCTTAATTGCTCTACTTGACTGCAAACTTAGATAT CAAAGTGCTAGGTCCTGGAATCTGTATATCTAAGGCTGGTAGATTGTGGGGTTACATTTGAGTGCAGCACAATTATAAAC GTGCAGACATCACTTTGCAAACGTATTGTTTTTCATACTTATTGCATAGTTGAATATGTGTGCTGGAATTTTGCATTTTA TTTCATTTGAAATATGAGTTGTCTCCATGTCGACCCTTTATCCTAAAAAGGCATAAAATCTATCTTCATCACACCCTGTT TCCCTTGATGGTGGTCACTCTCAATGAGAAATAAGTTCATGTTTGGATACACGGTGAAAAACCACGATGAACCAAAATCA CGTTGAACTGAAGCAACGTCCCTTAGCTTTTGTGATTATTTATCCATTGTGATTTTGTCTTTACCGTGATTACGTGTATC CAAACGTGTGCTAAGACTCTTGTGGTCGGATTTGGTCAAAGAAATCAAAGTTGATGCAGCCGGCGGGAGTGTAATATAGA AGAGGAGTGGAGCACCTCTAATTGCATACAGCAAGTGAAGGGAAGTTGACCAAGTGTTAATATTGGTGGATGCACACAAT ATTCAAGGCGGGTGAGGTCATTAAATTCTACAAAGAAAGTTCTTGCAATGCATTTAGCTTTAAGGTATGTACCTAGGATT CAAGTCTTTTGTCCCCAAACTGTGTCTCATTTTTGTGCTCAACCAATAAATTTTGACATGTCAATTAAAAATCACCATGC AAGTTTGTAATGGTCCAACTCATATCTTTTTAATTGACATGTTGAGATTTCATTGGTGGGACAAACAATTTGGGCATGAT TCCATGATAGAAGATTTTGATCCATGTAATCAGAGGTGAAGATGTTCTTACTTGTCACAAGAAAATTGTGCTGGAGGGTA TATTTGGCTCCTCTAAAGGAAGTATTGCATTGTAGTATGTAAAATACAGTTATGTTTAGTGAAAAAAGTAAGGTATAGAT TTTAAGAATGTTATAATTTATGTTGTACATTCATGCAATTTATCACAACTTTGATTACTAATTTTTAGTATTTAATGGGT GTAGTCCCATAACTTATGGAATGAGCCTAATTCAATAAAGCCTAATGGGGAAGGCCCTTGGTGAATTGAATGCCTTAGTC TTGTTTAGGTTTGGGGTGAATGATTAAAGCAAAGGGTTTTGAGATTTCTTTGGATGATGCATGATGAGATTCTTGTAATG TATATAAGACATAAGAATGATGAGTTCCTCGTGCTAAAATATTCATTTCTTGAGTCTGAAACAGTTTGGTCTATTAGGCC CACTCATTGGCTTTGGTGGGTGAACACAAATTATGAGGTGGTTCGGTTGTTGAAATCGATCTTTGCTTTCGTGTGAGACA GGATAGGGTTGGGTTGGTTGAATATAATTTTCGATTATTTTTGCAGAATGGCTGTTTATGGTAGTTGGAATCAATCTCAA TTTTGGATATTCGTTTAATGGCCAATGTCAATGATATACACGATATTGGATATTATTTGCCTGTGATACTCCTGCAAATA GAGATATTGCTTTTAATGCGAG
CDS sequence (LotjaGi6g1v0310300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCGTGTTAGATTTTCATCTCAACAAGCACCGGTACATAAGCTAGGAGATCCTCAAATGACTCTATCTCCTAAGTT TAGGTTAGCTGTGATGCAATCTTCATTGGCAAATCCACCGCCGGAGTTGGAGCTTTCTCTCAGAGAAGAGCCGTTAATAC CGGGGCTTCCTGATGATGTTGCTCTTAACTGTCTTCTTCGTCTTCCGGTACAGAGTCATTCATCATGTAGAGCTGTCTGC AAGAGGTGGCATCTGCTACTTGGTAATAAGGAGAGGTTTTTTACCAACAGGAAGCAATTGGGTTTCAAAGACCCTTGGCT TTTTGTATTTGCCTACCATAAGTGCACTGGGAAGATCCAGTGGCAGGTTCTTGATCTTACTCACTTTTCTTGGCACACTA TCCCTGCGATGCCTTGTAAGGACAAGGTTTGTCCTCATGGTTTTAGGTGTGTTTCGATTCCACACGACGGCACTCTCTTT GTGTGCGGTGGTATGGTCTCTGATGTGGATTGCCCTCTTGACTTGGTGTTGAAATATGAGATGCAGAAAAACCGTTGGAC TGTGATGAATAGGATGATTACTGCTAGGTCATTTTTCGCCAGTGGATTGATTGATGGGATGATTTATGTAGCTGGGGGTA ATAGTACTGATCTTTATGAGCTAGATTCTGCAGAGATGTTGGATCCTCTCAACGGGAATTGGCGCTCTATTGCGAGCATG GGGACGAATATGGCATCCTATGACGCTGCGGTTCTCAATGGTAAACTTCTAGTGACAGAAGGCTGGTTATGGCCATTTTA TGTCTCTCCGAGAGGCCAGGTGTATGATCCAAGGACTAATAACTGGGAAAGTATGGCTGTTGGGCTGAGAGAAGGGTGGA CTGGTTCAAGTGTGGTTGTTTATGGGCACTTATTTGTTGTTTCTGAGCTCGAAAGGATGAAGCTTAAGGTTTACGACCCG GAAACGGATTCATGGGAAGCCATAGAGGGTCCCCCTTTGCCTGAGCAAATATGTAAGCCTTTTGCTGTGAATGCTTGCGA TTGTCAAATTTATGTTGTGGGTCGAAATCTTCTGGTTGCTGTTGGTCATATTTCTAGATTGAATCTGAAAGAAAGTTGTG AGGGAAAACGGAAATTCAGCGTCCAATGGCATGTAATTGACGCGCCAGAAAGTTTATCTGATCTGACTCCTTCAAGCTCC CAGGTGTTGTTTGCATAG
Protein sequence (LotjaGi6g1v0310300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQRVRFSSQQAPVHKLGDPQMTLSPKFRLAVMQSSLANPPPELELSLREEPLIPGLPDDVALNCLLRLPVQSHSSCRAVC KRWHLLLGNKERFFTNRKQLGFKDPWLFVFAYHKCTGKIQWQVLDLTHFSWHTIPAMPCKDKVCPHGFRCVSIPHDGTLF VCGGMVSDVDCPLDLVLKYEMQKNRWTVMNRMITARSFFASGLIDGMIYVAGGNSTDLYELDSAEMLDPLNGNWRSIASM GTNMASYDAAVLNGKLLVTEGWLWPFYVSPRGQVYDPRTNNWESMAVGLREGWTGSSVVVYGHLFVVSELERMKLKVYDP ETDSWEAIEGPPLPEQICKPFAVNACDCQIYVVGRNLLVAVGHISRLNLKESCEGKRKFSVQWHVIDAPESLSDLTPSSS QVLFA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 405 | 405 | 6.1E-249 | – | |
| PANTHER | 1 | 405 | 405 | 6.1E-249 | – | |
| SUPERFAMILY | 51 | 131 | 81 | 5.63E-10 | ||
| Pfam | 53 | 89 | 37 | 2.7E-6 | ||
| Gene3D | 55 | 91 | 37 | 9.1E-6 | – | |
| SMART | 56 | 96 | 41 | 1.4E-4 | ||
| Gene3D | 103 | 368 | 266 | 3.2E-39 | ||
| SUPERFAMILY | 104 | 356 | 253 | 1.15E-47 | ||
| SMART | 158 | 206 | 49 | 0.0068 | ||
| Pfam | 195 | 241 | 47 | 1.9E-7 | ||
| SMART | 207 | 254 | 48 | 3.4E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0310300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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