Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0311900 |
| Transcript ID | LotjaGi6g1v0311900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9M0U9|SKI19_ARATH F-box protein SKIP19; TrEMBL-Plants: tr|I1M1I2|I1M1I2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0311900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63046969..63050324) extracted from Lotus japonicus Gifu genome v1.2.
CTAAGCCTAATCCGTATAACTGGGCCTTGTAACAGAACCTCTCGCTCTCAGAACACGAGAAAATGGAGAATTTCAGTTTG TGACCGTCACAACGTAACAACCTCTCTCCCTCTTCCTCCTCCTTGCCCTCGATTCCTCCGATGGACACACCGTCGTCGTC GAATTCGAAGGCACTCGCCGATTCCGGCGAAGAACGAAACTGGCTCGACCTTCCACGTGACGTGGCGTCCACCATTTTCC TGAAGCTCGGCGCGATCGAGATCCTGACCACCGTTCAGCGTGTTTGCTCCGTGTGGCGCAACATCACCAAGGACCCTACC ATGTGGCGCACCATCGACATGCATAATTTGGGGGATTCTCGCTACAATTTAGACACCATCTGCCGCCGCGCTATCGACTA CAGCTCCGGCCACTTGCTCGATATCAACATCGAGTATTTCGGTACCGATGATCTCCTTGACTATATCACTGATTCGTGAG TTCCACCTGCTTCTCCATTTTCCATGCTTTTGATTGTTTTGTGAAATTTGCGATTGGATATTTGAATCATGTGAATTATG CGAATTAGGGTATGTGAGTAACTATGCTTCAAATTTGAATTAGGTTTTCAATTTCCAACCACAATCATGCATCTATTTTT TTGTTAAGAGAAAGCATGACATGCATACACTGAATTGAATTGAAACTAATGAAAACTGGAGAAATGCTGGCAATTTGGCT CTCCCTTTTGATTGCTTTATTGTGAAATGATGTTCCTTACTGGTTCAGTTAATAGAGAGTATCCTGGGTTTGTTAAGGGG TCAGCGTGTGAAATCACACCGAATAGTAGAAGAGGGTTGAAACGAGAATTCGTGAGTCCCTTGTCATGGGCACTTTGAGC AGAATCTAATGAAACCTGTTTGTTCGTTTGATATGTACCTCAAGTATTAGGCCCAAGTATTATTCGAGTCTCAAATTTCA TTTCGAATTCAATGTGTTTTGGAGTGAAAAGTTTGTTTTTTGAATGAAGCAATTTTTGTCTTGGTGGATTTAATCTTGAA AATAATGGACTGGAGTTCTTACCATGAAGCTGAAACAAAACCTGAATGAATATGAAGTAGATCTAGAGGATAGAGCTCCG CGTAGCTAACAGTGGCAGGATTTGTAGGGGGATTGGACTTGGATGGGATTAGTATGCAGGATTTTGAATAAAAATGTGCA AAACTTGGAAACCCAATTTTAGTACAGAAGCATATGTATGCAGTCAGAGTTTTGGTCAAGTGTAACTCTCAGAAAGGATT GGAAAAAATCATTACAATACTCTTCCATGTCATTTTAATCTAGTCATTGATAAGGGAGTAGGGCTCCAAAGAAAAATAGA ATATCAAGTGTAATTAGGGCAAACCTCCAGAGAGTTGATATTAATTTTATTTGAAGTTTCATAACTTTTGTCACTCATCC TGTAGGTTGTTTTGCTGTTAAATGAAGAAAGTTCACTTATCTAATAGTTCAAAGCCAAGTTTTATTTTTTATTTCTTCAT TTCTCTTTTGTTTTTATTAGAACTTGAAATCATGTTCAGCATTGTCCGGGATTCGTTGTATGAATAATTATTAGTACACT GATCAGTGATATTTTGTTTTAATGATAACTGACAATCATCTTTTGTTTTTATTTTTACTTCCATGTGTATGTTTGATGTA GTTATTTCTGAAAGTATTCTGTGTCATAACTAAATTATTTTTTGGTGCTTCTGTTTGAAATGTAAAGTGTAAGATGTTTT ACAAGCGCAGAATTTCACATTTTGGCTTAAAAATAATCATAAATCACATTGTCAGATAGTTAACCAAAATCACAGCAGTT CTTTTGCAAGCATATCATCTAGTTTGCTTGCCAGTGTCATGGCTGATCTTTTGGCTGCATCTCTATGTAACACTTTACCC CCCCTGTTTTGGCTTACTGATTTACAGGACAAGTCATCTACGACGCCTACGTCTTGCATGTTGTTATAGCATATCAGATG AAGGATTAAGTGAAATTGCAAAAAAGTTTCCTCAGCTGGAGGAACTTGATATATCAATCAGCAGCTTGTCCAAAGAGCCG CTAGAAGTTATTGGCCGAAGTTGCCCTCGCTTGAAAACCTTGAAATTCAACATGGAAGGGTATAGACGTCCACACATAGA GAGTGATGAGGAGGCATTTGCTGTTGCAGAAACCATGCCTGAGTTACGCCATCTCCAGCTTTTCGGAAACAAGCTGACTA ATGATGGCTTGCTTGCCATTCTTGATGGCTGTCCTCACCTTGAAACTCTCGACTTACGACAATGTTTCAATGTTAATCTC GCAGGAAGTTTGGGGAAGAGATGTGCTGAACAGATCAAAGATTTACGGCTTCCGAATGATCCTGCTGATGACTACCCATT TGAAGCTGAAATCGATTATGGATCACTTGATGAAGACTACCCATCTGGGTTCTCAGACATAGCTTTCTTGTCTGATGACG ATTATGACTATTATGGATTCTCAGGTGGGAGTGAACTTTCTGATTATGATTATGATTATGATGAGTATTATGCCTTTTGA CAAATTTGAAATATTTCAGCACTCGGAAAATGTGTGCTGTGATTAGTGAATATTATAGTTGCTGTCTTTGTTTTTTATCT CTGTAACATTGGGATCAAAAGAAAGCCAGGAAACTCCCATGCATTTGATTAAAGTATCTACGCCTTCTAAAGACACTCAA TGTAGTGATGCTGTTTTAATGAATTTATTAGGTGGAGTCAGCCTAACCGTCTTTTATACGGGCAGAAGCTGATAATCATC TGCAAGACTGCAGCCTTGGTCAAGTGCAGTCATTGTTTACAACTTGTATTTATCTTATATATGTGAGAAGCAACTTCTCT GGCTTTATTGTAGCAAATCTATGATTCTTAACTTTGGTTTTCTTGAAGTTTTTGGTAGAAGCAGCCAACTTTTTATGCAT ACCCTGCCTGATTTGAGTTGTAGTAAAATAAATGGTACTCCTGGCTTAGTATTGAAGAGTTCTTGGTAAAGGGTTCTGGA CTTCTGGCTTAACTAATCCCATTAAGGGCAGTTAATGTTGTGTCAAGGTGTGATCTATGTATGAAAAGTACATCGAAATT AGTTTTGTGTAGGTTATTCGCGTTTGAATCCTATATCGCTTAATGTATTGATCGTGAGGCGAGGTAGTCTCATTGTTATC AGTTGTGATGATACTTTGATTAAAATTTACATTAAGATATGAAGTCATAAAGAAATGCACAGCACTAGCTAATGCCACAA TGTCTTTTTGACCATAGTTTGTTAATTGGACACAATCGCACTTGTTGTATACTACCAATTATAGTGCCTCATTCCC
CDS sequence (LotjaGi6g1v0311900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACACACCGTCGTCGTCGAATTCGAAGGCACTCGCCGATTCCGGCGAAGAACGAAACTGGCTCGACCTTCCACGTGA CGTGGCGTCCACCATTTTCCTGAAGCTCGGCGCGATCGAGATCCTGACCACCGTTCAGCGTGTTTGCTCCGTGTGGCGCA ACATCACCAAGGACCCTACCATGTGGCGCACCATCGACATGCATAATTTGGGGGATTCTCGCTACAATTTAGACACCATC TGCCGCCGCGCTATCGACTACAGCTCCGGCCACTTGCTCGATATCAACATCGAGTATTTCGGTACCGATGATCTCCTTGA CTATATCACTGATTCGACAAGTCATCTACGACGCCTACGTCTTGCATGTTGTTATAGCATATCAGATGAAGGATTAAGTG AAATTGCAAAAAAGTTTCCTCAGCTGGAGGAACTTGATATATCAATCAGCAGCTTGTCCAAAGAGCCGCTAGAAGTTATT GGCCGAAGTTGCCCTCGCTTGAAAACCTTGAAATTCAACATGGAAGGGTATAGACGTCCACACATAGAGAGTGATGAGGA GGCATTTGCTGTTGCAGAAACCATGCCTGAGTTACGCCATCTCCAGCTTTTCGGAAACAAGCTGACTAATGATGGCTTGC TTGCCATTCTTGATGGCTGTCCTCACCTTGAAACTCTCGACTTACGACAATGTTTCAATGTTAATCTCGCAGGAAGTTTG GGGAAGAGATGTGCTGAACAGATCAAAGATTTACGGCTTCCGAATGATCCTGCTGATGACTACCCATTTGAAGCTGAAAT CGATTATGGATCACTTGATGAAGACTACCCATCTGGGTTCTCAGACATAGCTTTCTTGTCTGATGACGATTATGACTATT ATGGATTCTCAGGTGGGAGTGAACTTTCTGATTATGATTATGATTATGATGAGTATTATGCCTTTTGA
Protein sequence (LotjaGi6g1v0311900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTPSSSNSKALADSGEERNWLDLPRDVASTIFLKLGAIEILTTVQRVCSVWRNITKDPTMWRTIDMHNLGDSRYNLDTI CRRAIDYSSGHLLDINIEYFGTDDLLDYITDSTSHLRRLRLACCYSISDEGLSEIAKKFPQLEELDISISSLSKEPLEVI GRSCPRLKTLKFNMEGYRRPHIESDEEAFAVAETMPELRHLQLFGNKLTNDGLLAILDGCPHLETLDLRQCFNVNLAGSL GKRCAEQIKDLRLPNDPADDYPFEAEIDYGSLDEDYPSGFSDIAFLSDDDYDYYGFSGGSELSDYDYDYDEYYAF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 284 | 279 | 1.7E-107 | – | |
| PANTHER | 6 | 284 | 279 | 1.7E-107 | – | |
| Gene3D | 15 | 64 | 50 | 9.8E-10 | – | |
| ProSiteProfiles | 18 | 65 | 48 | 10.822 | ||
| Pfam | 21 | 66 | 46 | 5.1E-7 | ||
| SUPERFAMILY | 44 | 235 | 192 | 2.16E-23 | – | |
| Gene3D | 65 | 179 | 115 | 5.5E-17 | ||
| SMART | 113 | 138 | 26 | 0.0047 | ||
| Pfam | 114 | 136 | 23 | 0.015 | ||
| Gene3D | 180 | 260 | 81 | 3.1E-11 | ||
| SMART | 195 | 219 | 25 | 61.0 | ||
| Pfam | 198 | 216 | 19 | 0.021 | ||
| SMART | 220 | 243 | 24 | 46.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0311900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…