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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0312200 |
| Transcript ID | LotjaGi6g1v0312200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065; TrEMBL-Plants: tr|V7BPN5|V7BPN5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0312200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63060667..63063299) extracted from Lotus japonicus Gifu genome v1.2.
TAATATATACCCCCTAAGTAGCCTTGATTCAAGATGAAGTATGACGTGATGGTTGCTCACCTCATCCATTAATCATGAGA TCGAACATTATGGGTCCGGATCCTCTTCAGTGAATTTTTCTCAATTTTTCTCCAGTGGACATTTGTGGCGGCTGGAAACA TTTTGTGGCGGTCCAAAACCGCCACAAATGTCCACTGGAGAAAACTTGAGAGGATTTCACTGGAGATACCCTAGTCTAAA AAAAAGTAGTATTGACTCTAGTGAAGGATAACTTGTAAGGCGGCTCCCTCTTCAATGGATCATATTAGTATAAAATGGAT TGGAGCAGCTCAAGTGCTAGCATTTCAGGTGTTTCATGGTTTGATTATAGTACAGTAGTAGCAATGAACATAAACTAGTG ATGATCAACCATTAAACATTAGCATAGCAGCAAGTGTAGCTTTCTTACAATAACATAACCATGTCTTGGGTACCATATAT AAGATGAGTCTCTATTTGCATCCAAATCTTTGAATTGTGCTACAACAAAATTGTCACCTGAGGCAAATGAACTTGTCCTC AAAGCTATCCTCATTGTTGCACATTCACACACCCATGTTACATGTCTCCAGAAACCATTTTTGTTCCTTCACATTCACAA GCTTCTTTTCAACCACCCCAGAAAATCCATTACCACACGTTCTCACAAAATGCATTTCTCTCTTGCAATACTGCGCCTCT TCCAAACACAAACTGAAGCAAATCCATGCATTTTCCATAAGGCATGGTGTCCCCCTCCACAACCCTGACATGGGCAAGCA CCTTATCTTCACAATCGTCTCCCTCTCTGCACCCATGTCCTATGCTCACCTTGTTTTCACCATGATACGTAACCCCAATG TGTTCACCTGGAACACCATGATCAGAGGCTATGCTGAAAGCCAAGACCCGAAACCTGCACTTCATTTCTACCGCCAAATG ACAATGTCTTGTGTTGAACCTGACACTCACACTTACCCTTTTCTTCTCAAGGCTGTTTCCAAGTCATTGAATGTTAGAGA AGGTGAAGCGTTGCATTCTGTGACGATCAAAAATGGGTTTGAGTCTTTGGTGTTTGTTCGTAACAGTTTGCTTCATATCT ATGCTGCTTGTGGTGACACTGAAAGTGCACACAAGGTGTTTGAGTCAATGACCGACCGAGATCTCGTGGCTTGGAATTCG GTTATTAATGGGTTTGCTCTCAATGGCAGGCCTAATGAAGCTTTGACCCTTTTCAGGGAAATGAGTGCCAACGGTGTGGA GCCGGATGGGTTCACTGTGGTTAGCTTGTTATCTGCGTGTGCTGAGCTTGGAGCTTTGGAATTAGGACGACGGGTCCATG TGTATTTGCTGAAGGCTGGCTTGAGAGAGAATTTGCATGTTGTTAATGCACTGTTGGACCTTTATGCGAAATGTGGGAGC ATCAGGGAGGCTCAGCAAGTATTTGGCGAGATGGAAGAGAGGAACGTGGTTTCTTGGACTACTTTGATTGTTGGCTTGGC TGTTAATGGGTTTGGTGAGGAAGCACTTGAGCTTTTCAAAGAGATGGAAGAACAGAAGCTAGCGCCTGGTGAGATCACTT TTGTTGGTGTCTTGTATGCTTGCAGCCACTGTGGGATGTTGGATGAAGGTTTCGATTACTTTAGAAGGATGAAAGAGGAA TACGGTATCGCGCCGAGGATAGAACATTATGGTTGTATGGTGGATCTTTTGAGTAGGGCAGGTTTAGTGAAACAAGCATA TGAATATATACAGAACATGCCAGTGCAGCCAAATGCAGTTATTTGGAGGACCTTATTAGGGGCATGTACAATACATGGAC ATTTGAGTCTGGGAGAGATAGCAAGATCTCACCTACTGAAGCTAGAACCTAAACATAGTGGGGATTATGTTCTTCTCTCT AATCTTTATGCCTCGGAGCGGCGTTGGACAGATGTACAAACAATTAGGAAGTCGATGCTGCAGGATGGCGTTAAGAAAAC CCCTGGCTATAGTCTTGTTGAGTTGGGCAACCGTGTTTATGAATTTACCATGGGTGATAGATCTCATCCTCAAAGTCAGG ATGTATATGCACTGCTAGAGAAGATTACAGAATTGTTGAAGTTAGAAGGCTATGTGCCTCGTACAGAAAATGTGCTTGCG GACATAGAGGAAGAGGAGAAAGAACAAGCTTTGTCTTATCACAGTGAAAAAGTTGCAATAGCTTTCATGCTCTTAAATAC AGCACCAGGGACCCCAATCAGAGTCATGAAGAATTTAAGAGTTTGTGCAGATTGTCATATGGCTATCAAACTCATATCAA AAGTTTATGATAGAGAGATTGTTATCAGGGATCGAAGTCGGTTTCACCATTTTAGAGGTGGTAAATGTTCCTGTAAAGAT TACTGGTAACATGTATAAGGATTTGATAATGGCATCTTGAGAGAGTAAAGGGCTGAAAACAGCTGTCTTCTTTACAGTTT ATTTATTTTTAATAGAAACATAATATGTTAGCTGAAAATTTTAACAATTAAGCAAATAATTTTAAAGAGGGGGAATTTTT TTGATTAAGTTTATGTTTTGACTTGAGGAGACATGGAACTTTTAAACAGAGGCAATGAAACACATGACCGAAG
CDS sequence (LotjaGi6g1v0312200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTTGTCCTCAAAGCTATCCTCATTGTTGCACATTCACACACCCATGTTACATGTCTCCAGAAACCATTTTTGTTC CTTCACATTCACAAGCTTCTTTTCAACCACCCCAGAAAATCCATTACCACACGTTCTCACAAAATGCATTTCTCTCTTGC AATACTGCGCCTCTTCCAAACACAAACTGAAGCAAATCCATGCATTTTCCATAAGGCATGGTGTCCCCCTCCACAACCCT GACATGGGCAAGCACCTTATCTTCACAATCGTCTCCCTCTCTGCACCCATGTCCTATGCTCACCTTGTTTTCACCATGAT ACGTAACCCCAATGTGTTCACCTGGAACACCATGATCAGAGGCTATGCTGAAAGCCAAGACCCGAAACCTGCACTTCATT TCTACCGCCAAATGACAATGTCTTGTGTTGAACCTGACACTCACACTTACCCTTTTCTTCTCAAGGCTGTTTCCAAGTCA TTGAATGTTAGAGAAGGTGAAGCGTTGCATTCTGTGACGATCAAAAATGGGTTTGAGTCTTTGGTGTTTGTTCGTAACAG TTTGCTTCATATCTATGCTGCTTGTGGTGACACTGAAAGTGCACACAAGGTGTTTGAGTCAATGACCGACCGAGATCTCG TGGCTTGGAATTCGGTTATTAATGGGTTTGCTCTCAATGGCAGGCCTAATGAAGCTTTGACCCTTTTCAGGGAAATGAGT GCCAACGGTGTGGAGCCGGATGGGTTCACTGTGGTTAGCTTGTTATCTGCGTGTGCTGAGCTTGGAGCTTTGGAATTAGG ACGACGGGTCCATGTGTATTTGCTGAAGGCTGGCTTGAGAGAGAATTTGCATGTTGTTAATGCACTGTTGGACCTTTATG CGAAATGTGGGAGCATCAGGGAGGCTCAGCAAGTATTTGGCGAGATGGAAGAGAGGAACGTGGTTTCTTGGACTACTTTG ATTGTTGGCTTGGCTGTTAATGGGTTTGGTGAGGAAGCACTTGAGCTTTTCAAAGAGATGGAAGAACAGAAGCTAGCGCC TGGTGAGATCACTTTTGTTGGTGTCTTGTATGCTTGCAGCCACTGTGGGATGTTGGATGAAGGTTTCGATTACTTTAGAA GGATGAAAGAGGAATACGGTATCGCGCCGAGGATAGAACATTATGGTTGTATGGTGGATCTTTTGAGTAGGGCAGGTTTA GTGAAACAAGCATATGAATATATACAGAACATGCCAGTGCAGCCAAATGCAGTTATTTGGAGGACCTTATTAGGGGCATG TACAATACATGGACATTTGAGTCTGGGAGAGATAGCAAGATCTCACCTACTGAAGCTAGAACCTAAACATAGTGGGGATT ATGTTCTTCTCTCTAATCTTTATGCCTCGGAGCGGCGTTGGACAGATGTACAAACAATTAGGAAGTCGATGCTGCAGGAT GGCGTTAAGAAAACCCCTGGCTATAGTCTTGTTGAGTTGGGCAACCGTGTTTATGAATTTACCATGGGTGATAGATCTCA TCCTCAAAGTCAGGATGTATATGCACTGCTAGAGAAGATTACAGAATTGTTGAAGTTAGAAGGCTATGTGCCTCGTACAG AAAATGTGCTTGCGGACATAGAGGAAGAGGAGAAAGAACAAGCTTTGTCTTATCACAGTGAAAAAGTTGCAATAGCTTTC ATGCTCTTAAATACAGCACCAGGGACCCCAATCAGAGTCATGAAGAATTTAAGAGTTTGTGCAGATTGTCATATGGCTAT CAAACTCATATCAAAAGTTTATGATAGAGAGATTGTTATCAGGGATCGAAGTCGGTTTCACCATTTTAGAGGTGGTAAAT GTTCCTGTAAAGATTACTGGTAA
Protein sequence (LotjaGi6g1v0312200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNLSSKLSSLLHIHTPMLHVSRNHFCSFTFTSFFSTTPENPLPHVLTKCISLLQYCASSKHKLKQIHAFSIRHGVPLHNP DMGKHLIFTIVSLSAPMSYAHLVFTMIRNPNVFTWNTMIRGYAESQDPKPALHFYRQMTMSCVEPDTHTYPFLLKAVSKS LNVREGEALHSVTIKNGFESLVFVRNSLLHIYAACGDTESAHKVFESMTDRDLVAWNSVINGFALNGRPNEALTLFREMS ANGVEPDGFTVVSLLSACAELGALELGRRVHVYLLKAGLRENLHVVNALLDLYAKCGSIREAQQVFGEMEERNVVSWTTL IVGLAVNGFGEEALELFKEMEEQKLAPGEITFVGVLYACSHCGMLDEGFDYFRRMKEEYGIAPRIEHYGCMVDLLSRAGL VKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLSLGEIARSHLLKLEPKHSGDYVLLSNLYASERRWTDVQTIRKSMLQD GVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEKITELLKLEGYVPRTENVLADIEEEEKEQALSYHSEKVAIAF MLLNTAPGTPIRVMKNLRVCADCHMAIKLISKVYDREIVIRDRSRFHHFRGGKCSCKDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 33 | 174 | 142 | 1.7E-101 | – | |
| Gene3D | 47 | 176 | 130 | 3.6E-12 | ||
| Pfam | 110 | 158 | 49 | 2.0E-10 | ||
| ProSiteProfiles | 111 | 145 | 35 | 11.213 | ||
| TIGRFAM | 113 | 147 | 35 | 2.3E-5 | ||
| ProSiteProfiles | 146 | 180 | 35 | 7.114 | ||
| PANTHER | 176 | 270 | 95 | 1.7E-101 | – | |
| Gene3D | 177 | 266 | 90 | 2.9E-22 | ||
| ProSiteProfiles | 181 | 211 | 31 | 7.476 | ||
| TIGRFAM | 186 | 214 | 29 | 0.0018 | ||
| ProSiteProfiles | 212 | 246 | 35 | 13.307 | ||
| Pfam | 212 | 259 | 48 | 4.5E-12 | ||
| TIGRFAM | 214 | 247 | 34 | 8.8E-10 | ||
| ProSiteProfiles | 247 | 281 | 35 | 7.267 | ||
| PANTHER | 266 | 477 | 212 | 1.7E-101 | – | |
| Gene3D | 267 | 378 | 112 | 3.9E-30 | ||
| ProSiteProfiles | 282 | 312 | 31 | 9.547 | ||
| TIGRFAM | 286 | 315 | 30 | 5.6E-4 | ||
| Pfam | 312 | 359 | 48 | 4.0E-9 | ||
| ProSiteProfiles | 313 | 347 | 35 | 11.707 | ||
| TIGRFAM | 315 | 348 | 34 | 1.1E-6 | ||
| ProSiteProfiles | 348 | 378 | 31 | 7.969 | ||
| TIGRFAM | 351 | 383 | 33 | 2.2E-4 | ||
| Gene3D | 379 | 513 | 135 | 4.5E-10 | ||
| ProSiteProfiles | 384 | 414 | 31 | 6.226 | ||
| Pfam | 387 | 411 | 25 | 0.74 | ||
| ProSiteProfiles | 450 | 484 | 35 | 6.16 | ||
| Pfam | 486 | 610 | 125 | 8.3E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi6g1v0312200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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