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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0312500 |
| Transcript ID | LotjaGi6g1v0312500.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Inositol transporter 1; TAIR: AT2G43330.1 inositol transporter 1; Swiss-Prot: sp|Q8VZR6|INT1_ARATH Inositol transporter 1; TrEMBL-Plants: tr|G7JAP8|G7JAP8_MEDTR Sugar porter (SP) family MFS transporter; Found in the gene: LotjaGi6g1v0312500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63074859..63076078) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTAGGAGTTGCTGGTTTGCCAGCTGTTATTCAGTTTTGTGTTATGCTTTTCCTGCCTGAGTCTCCAAGGTGGCTTTT CCTAAAGGTGAAAAGCTTCTATTTCATTTGATGAATTATATTTGAGAATTGTTAACTTAAATGCTTTCCCAGTGCTGAAA GTTATATTACCCTGGTATCTTATATACAGAATAGGAAAGAGGAAGCTATTTCTGTACTTCGTAATATCTATGATTACGAG CGCCTGGAAGATGAAGTCAATTACTTCGACTCTGTTTCTCAGCAAGAACTTCAGAAACGGATGGGCATTAAATCCATGGA TGTTTTCAGATCAAAGGAAATCAGACATGCATTTTTTGTTGGGGCTGGACTTCAGGTCATTGACACAAGCCTAACTTTTC TGTTTCTAAACTACACTTCCTTGTGTTTTTTTTTTATAGAACCAAGTTACAGTAAGCTTCTATAACGTTTTACAGTCTCA ACACTCAACAGTATTGAATGCATCATGCATACTTTTGAAATTGCTTGCATCTTAAGCTGTTTAACTTCTTTCACTTGTTC ATTATGCTGCAGGCTTTTCAGCAGTTCACAGGCATCAGCATAGTCATGTACTACAGCCCCACAATCATTCAAATGGCTGG GTTTAATTCCAACCAGTTAGCTCTTCTCTTATCCCTCATTGTTGCTGGCATGAATGTTGCTGGAACAATTCTTGGCATTT ATGTAATTGACCGTGCAGGGCGAAGAAAATTGGCTCTCTCAAGCATGTCAGGTGTAATTGTAGCTCTGGCAATCCTTTCT GCAGGATCATACCTTGAAGCATCTGACTCCACAAATAGAACCTACGGGTGGATTGCAGTCATTGGTTTAGCTATGTACCT TCTTTTTTTCGCTCCAGGAATGGGACCAGTGCCATGGACTGTGAACTCAGAAATCTATCCAGAAGAATTCCGAGGTGTAT GTGGGGGCATGTCAGCCACTGTAAACTGGGTTTGCAGTGTGATAATGTCACAGAGTTTTCTTTCAATTTCTGATGCTGTT GGCCTTGGTGGGAGTTTTGCGATTCTTGGTGTTATAGCCGTGGTTGCATTCTTATTTGTGCTCTTGTTTGTGCCAGAGAC AAAAGGATTGACATTTGAAGAAATGACACTCATATGGAAGAGGAGAGCCAGGGGTAAAGATTATGACACACAAAGCCTTC TTGAGGGAAACCAGTCCTAA
CDS sequence (LotjaGi6g1v0312500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTAGGAGTTGCTGGTTTGCCAGCTGTTATTCAGTTTTGTGTTATGCTTTTCCTGCCTGAGTCTCCAAGGTGGCTTTT CCTAAAGAATAGGAAAGAGGAAGCTATTTCTGTACTTCGTAATATCTATGATTACGAGCGCCTGGAAGATGAAGTCAATT ACTTCGACTCTGTTTCTCAGCAAGAACTTCAGAAACGGATGGGCATTAAATCCATGGATGTTTTCAGATCAAAGGAAATC AGACATGCATTTTTTGTTGGGGCTGGACTTCAGGCTTTTCAGCAGTTCACAGGCATCAGCATAGTCATGTACTACAGCCC CACAATCATTCAAATGGCTGGGTTTAATTCCAACCAGTTAGCTCTTCTCTTATCCCTCATTGTTGCTGGCATGAATGTTG CTGGAACAATTCTTGGCATTTATGTAATTGACCGTGCAGGGCGAAGAAAATTGGCTCTCTCAAGCATGTCAGGTGTAATT GTAGCTCTGGCAATCCTTTCTGCAGGATCATACCTTGAAGCATCTGACTCCACAAATAGAACCTACGGGTGGATTGCAGT CATTGGTTTAGCTATGTACCTTCTTTTTTTCGCTCCAGGAATGGGACCAGTGCCATGGACTGTGAACTCAGAAATCTATC CAGAAGAATTCCGAGGTGTATGTGGGGGCATGTCAGCCACTGTAAACTGGGTTTGCAGTGTGATAATGTCACAGAGTTTT CTTTCAATTTCTGATGCTGTTGGCCTTGGTGGGAGTTTTGCGATTCTTGGTGTTATAGCCGTGGTTGCATTCTTATTTGT GCTCTTGTTTGTGCCAGAGACAAAAGGATTGACATTTGAAGAAATGACACTCATATGGAAGAGGAGAGCCAGGGGTAAAG ATTATGACACACAAAGCCTTCTTGAGGGAAACCAGTCCTAA
Protein sequence (LotjaGi6g1v0312500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGVAGLPAVIQFCVMLFLPESPRWLFLKNRKEEAISVLRNIYDYERLEDEVNYFDSVSQQELQKRMGIKSMDVFRSKEI RHAFFVGAGLQAFQQFTGISIVMYYSPTIIQMAGFNSNQLALLLSLIVAGMNVAGTILGIYVIDRAGRRKLALSSMSGVI VALAILSAGSYLEASDSTNRTYGWIAVIGLAMYLLFFAPGMGPVPWTVNSEIYPEEFRGVCGGMSATVNWVCSVIMSQSF LSISDAVGLGGSFAILGVIAVVAFLFVLLFVPETKGLTFEEMTLIWKRRARGKDYDTQSLLEGNQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 291 | 291 | 3.3E-82 | – | |
| Pfam | 1 | 286 | 286 | 2.5E-71 | ||
| ProSiteProfiles | 1 | 275 | 275 | 24.734 | ||
| CDD | 1 | 273 | 273 | 6.12929E-89 | – | |
| PANTHER | 1 | 304 | 304 | 2.2E-138 | – | |
| TIGRFAM | 1 | 282 | 282 | 8.1E-72 | ||
| PANTHER | 1 | 304 | 304 | 2.2E-138 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SUPERFAMILY | 2 | 282 | 281 | 4.05E-39 | ||
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 27 | 22 | - | – | |
| Phobius | 28 | 82 | 55 | - | – | |
| Phobius | 83 | 105 | 23 | - | – | |
| TMHMM | 84 | 106 | 23 | - | – | |
| PRINTS | 94 | 104 | 11 | 4.5E-10 | ||
| Phobius | 106 | 119 | 14 | - | – | |
| Phobius | 120 | 144 | 25 | - | – | |
| TMHMM | 121 | 143 | 23 | - | – | |
| ProSitePatterns | 139 | 155 | 17 | - | ||
| Phobius | 145 | 150 | 6 | - | – | |
| TMHMM | 150 | 172 | 23 | - | – | |
| Phobius | 151 | 172 | 22 | - | – | |
| Phobius | 173 | 183 | 11 | - | – | |
| TMHMM | 182 | 204 | 23 | - | – | |
| Phobius | 184 | 208 | 25 | - | – | |
| PRINTS | 187 | 208 | 22 | 4.5E-10 | ||
| Phobius | 209 | 219 | 11 | - | – | |
| PRINTS | 210 | 222 | 13 | 4.5E-10 | ||
| TMHMM | 217 | 239 | 23 | - | – | |
| Phobius | 220 | 241 | 22 | - | – | |
| Phobius | 242 | 246 | 5 | - | – | |
| Phobius | 247 | 271 | 25 | - | – | |
| TMHMM | 249 | 271 | 23 | - | – | |
| Phobius | 272 | 306 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0312500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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