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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0312500 |
| Transcript ID | LotjaGi6g1v0312500.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transporter; TAIR: AT2G43330.1 inositol transporter 1; Swiss-Prot: sp|Q8VZR6|INT1_ARATH Inositol transporter 1; TrEMBL-Plants: tr|G7JAP8|G7JAP8_MEDTR Sugar porter (SP) family MFS transporter; Found in the gene: LotjaGi6g1v0312500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63076850..63078454) extracted from Lotus japonicus Gifu genome v1.2.
AACACGATGACGACGCCTGGGAGCTCCGATTACTTGGAATTGTATCCGGAGAGGAAAATGTCCTACTTCAAGAATCCCTA CATTCTCGGAGTCACTGCAGCTGCTGGCATAGGTGGACTCCTCTTCGGCTACGATACAGGTAACACTAACACCACCTCTT TCAATCTCAATCTTCGGCATAGGTGGATTGGATTTTTATTAGTTTAAGTTCATGAACTAATTTGATTATCAATTTGAGAT TCTCAGCTTTTAATTGTTGTATCACTTTTCTTGTATGTGTAATGTTTACATTTTATCTTAATCCATTTATTAAATATGTG CTTTTTAACTGTTTGTGTATGTCTACATGATGATGATCCCTGTATATTGTTCAAAGTTGTCAATTGTTGATGGAAATAGG TGGGGATGAAGTGAAATAAGAATAGGATTCATGTTTTGAATTGTAATGAAACAAGATGGAATGGACTGCGTAATGCATTT AATTTAATTTCATTCAAAACTTTTTTTTTCTTTCTAATTTGGAGAATTTCATGGATAAGATTTTTCTTTTCAATTAATGG ATTGGTAATTGATTTCATTTTGTTCATTTCACTCTATTCTGACTTAACTTGGAACTCTGTTATTTGCTGCAGGTGTTATA TCAGGGGCCCTTCTCTATATTAAAGATGATTTTGAGGAAGTCCGCAGAAGTAGCTTACTTCAGGTACAAGCTTTTCTGCT CAGATGAATGTTACATTCATTTTTTTGATTGCCTGTTTCATAAGTGGTTAGTTTGGTCTCAGATCTATAAACACGGTAGG TTTAATTTCAAATGTACACGATTTTGGCAGTTCGGAAGAGAAAGAAGATATGGATATGATAATGTATTGTTTTATGGCTT TACTGCTGCAATTGCAGAATTTATGGTTCCAGTGCCAAAAATAGAGACAACTTCTCGCTAGTTACTGCACTCCGGAGTTT TCATGGTGTGCTACTGTGCATTATTTATAATTTGTACGTTTATTGCTTATTCCTTTTTCCTGTTTCTTTTATCCTTTTAT TTTTCTGTATGCCTGTGGCTCTGTAGAGGGTGGATTGTTGGAGTTGTACTTTATTTCCACTAAAAGCCAGAAACATTACT ATCTATTTAGATAAACTAAACTTGCTGCTTGTTAGTATCCTTTAGCATACATGTCCATATTGCCTTCTCTGCAATCTAAA TCATTTTTTACTTTAACTTGCCAGGAAACAATTGTAAGCATGGCATTGGTTGGTGCAATTATTGGAGCAGCAACAGGTGG CTGGATTAATGATGCGTTTGGACGTAAGAAGGCCACCCTCAGTGCTGATGTTGTCTTCACTCTTGGATCACTTGTTATGG CTGCTGCACCAGATGCATATTTTGTCATATTTGGCCGTCTTCTTGTTGGCCTTGGGATTGGTGTAGCTTCTGTCACTGCT CCTGTATATATTGCAGAATCCTCACCATCAGAAATAAGGGGTTCATTAGTGAGCACAAATGTGCTTATGATAACTGGTGG ACAGTTTCTTTCTTACCTCATAAATCTTGCCTTTACCGAGGTAGGCCGCCTATCGCTCTTTTTTCTTTAAACTTCCTATT TCTAG
CDS sequence (LotjaGi6g1v0312500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGACGCCTGGGAGCTCCGATTACTTGGAATTGTATCCGGAGAGGAAAATGTCCTACTTCAAGAATCCCTACATTCT CGGAGTCACTGCAGCTGCTGGCATAGGTGGACTCCTCTTCGGCTACGATACAGGTGTTATATCAGGGGCCCTTCTCTATA TTAAAGATGATTTTGAGGAAGTCCGCAGAAGTAGCTTACTTCAGGAAACAATTGTAAGCATGGCATTGGTTGGTGCAATT ATTGGAGCAGCAACAGGTGGCTGGATTAATGATGCGTTTGGACGTAAGAAGGCCACCCTCAGTGCTGATGTTGTCTTCAC TCTTGGATCACTTGTTATGGCTGCTGCACCAGATGCATATTTTGTCATATTTGGCCGTCTTCTTGTTGGCCTTGGGATTG GTGTAGCTTCTGTCACTGCTCCTGTATATATTGCAGAATCCTCACCATCAGAAATAAGGGGTTCATTAGTGAGCACAAAT GTGCTTATGATAACTGGTGGACAGTTTCTTTCTTACCTCATAAATCTTGCCTTTACCGAGGTAGGCCGCCTATCGCTCTT TTTTCTTTAA
Protein sequence (LotjaGi6g1v0312500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTPGSSDYLELYPERKMSYFKNPYILGVTAAAGIGGLLFGYDTGVISGALLYIKDDFEEVRRSSLLQETIVSMALVGAI IGAATGGWINDAFGRKKATLSADVVFTLGSLVMAAAPDAYFVIFGRLLVGLGIGVASVTAPVYIAESSPSEIRGSLVSTN VLMITGGQFLSYLINLAFTEVGRLSLFFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| PANTHER | 2 | 182 | 181 | 2.4E-97 | – | |
| PANTHER | 2 | 182 | 181 | 2.4E-97 | – | |
| Gene3D | 18 | 188 | 171 | 9.5E-42 | – | |
| SUPERFAMILY | 19 | 181 | 163 | 1.44E-28 | ||
| TMHMM | 25 | 47 | 23 | - | – | |
| Phobius | 25 | 54 | 30 | - | – | |
| ProSiteProfiles | 29 | 189 | 161 | 31.561 | ||
| Pfam | 30 | 181 | 152 | 6.8E-39 | ||
| CDD | 32 | 181 | 150 | 3.35482E-73 | – | |
| PRINTS | 37 | 47 | 11 | 6.8E-12 | ||
| Phobius | 55 | 65 | 11 | - | – | |
| Phobius | 66 | 88 | 23 | - | – | |
| TMHMM | 67 | 89 | 23 | - | – | |
| Phobius | 89 | 99 | 11 | - | – | |
| TMHMM | 98 | 117 | 20 | - | – | |
| Phobius | 100 | 117 | 18 | - | – | |
| Phobius | 118 | 122 | 5 | - | – | |
| TMHMM | 122 | 144 | 23 | - | – | |
| Phobius | 123 | 144 | 22 | - | – | |
| PRINTS | 123 | 142 | 20 | 6.8E-12 | ||
| ProSitePatterns | 128 | 153 | 26 | - | ||
| Phobius | 145 | 155 | 11 | - | – | |
| TMHMM | 156 | 178 | 23 | - | – | |
| Phobius | 156 | 178 | 23 | - | – | |
| Phobius | 179 | 189 | 11 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0312500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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