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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0312600 |
| Transcript ID | LotjaGi6g1v0312600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT3G25210.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LSF5|PP254_ARATH Pentatricopeptide repeat-containing protein At3g25210, mitochondrial; TrEMBL-Plants: tr|V7BPN9|V7BPN9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0312600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63079527..63081598) extracted from Lotus japonicus Gifu genome v1.2.
CTTTAAGCCCAATTCCCAAAAATGAATAAGATTGATCCAATAGCCAAACTAGGCCCATCCTCCCCCAGCTGTTGTTTCTG CGAAAAGCCCTTCTTCCCAGTTCGCTCTCACTTCACTCCATCAACGACATGGCTACCATCACCAAACGATTCTTCAGTCT ACGCTCTGCGTATTCATCTTCTCTCTTCACCACCACCACCACCGCATCCTCCCTCCTCCTCCACACTCCCACGCGCCGAT ACTCCACCCCACCCCGCACCAGAACCCCACTCGAGAAACAGTTCGAGACATGGGTCAACCACCTCAAACCCGGTTTCACC CCTTCCGACGTCGACCGCGCCCTCACCTCCGTCTCCGACCCCGATCTCGCCCTCGACATTTTCCGATGGACCGCCCAGCA ACGCTCCTACAATCACACCGACCTCACCTACCTCACCATCATCAAACACCTCATCGCCGGCCGCCGCTACCAGCAAGCTG AAACCCTCGTCGAGGAGGTCATCGCCGGCGCCTGCGACGGCTCCATACCCCTCTACAACTCCATCATTCGCTTCTGCTGT GGTCGCAAGTTCCTCTTCAGTCGCGCCTTTGATGTCTACAACAAAATGCTCAGGTCTGAGGATTGCAAACCTGACCTTGA AACTTACACTTTGCTTTACAATTCGCTGCTTAGAAGGTTCAATAAGTTGCATGTTTGCTATGTTTATTTGCACGCGGTTC GGTCTTTGACGAAGCAGATGAAGGCTGTTGGTGTTATACCTGATACATTTGTGTTGAACATGATCATTAAGGCTTATTCT AAGTGTTTAGAGGTGGATGAGGCGATTAGAGTTTTTCGCGAAATGGGGTTGTATGGGTGTGAGCCTAATGCTTATAGTTA TAGTTATATTGCTAGAGGTTTGTGTGAGAAAGGGAGGGTGAATCAAGGGTTGGGGTTTTATAAGGAAATGAAGGAGAAGT GTTTGCGGCCGAGTACTAGTACTTATGTGATTATAGTTTGTAGTCTCGCTATGGATCGAAGGTTTGAGGATGCCATTGAG GTTTTGTTTGATATGTTGGGGAATTCTAGGTCCCCTGATCATCTCACCTACAAGACTGTTTTAGAAGGGTTGTGTCGGGA ACGAAGAGCTGATGAAGCCTTTGACCTGCTTGATGAATGCAAGAAGAGGGATATTTCTATGAGCGAAAAGATGTACAAGA CTTTGTTGGATGATTTGCATTATGTGTGCCGGGAGTAGATTCTTTGGTTTTGTCGAAGTTGAATTCAGTTGTTCTATTGC TTGGTAGAGACTAGAGCCTGATTTTGGAGAGCCATGAATACTACTATACACATGAGATAAAAGTCAGCTGATTTTTTTCG AAAGAGTGCTGAATGTAGATAAATGGAAACACCTTGCTTAGAGATTTCTCCCAGATTCTTTTGGACTACTTCCTTGCAGA AGTAAAATTTACAGATTGGTGGAGAAGGCACCTGAATATCTGTTAATTGTTGACACACTGCCACTGGTAGTCTGGTACTG GTCTTGATGATATGGTGGCACAAACTCTTTTCAGATGAAATGAGCCACTTGTTATGAAAAATATGAGCGTGTGATATGGA CCAGACCATGGTTTTTTAGGGCTACATGATAACCCAGCTGAAGCAAATACTGGTGCACTATAACTTCTACCTATGTCATT GTGATGGAACCTTGCAAAAGCTGATTCTGGATAGTTTGCTGGATGGGCATTTTATGATATCATATAACAGCTAAAGTAAC CTTATATTCATCTGGTTCTTATTGATGTCCTTAGTTCATTTGTTTGCTTGATGAATTCTTCTAGAATGGAATTTAGTTGA AACTTTTATAGTTGCTGGTTTTGGATATCTCAACAGACAACATGTATTGCTCGTGGGGGTAGGGGGGGATCACATTGTGT AAGTAACTTGGCATGATCTGTTGTATTTCTGAGTTAAACAGATTTACTCAGTGTACGGTGGTGATCATATTCACCAATGG AATTTTGTTTTTCTTTGCAATGTTTATCTGTTAGCAACTTAGCATTAAGCAATATATATTGTGGGTTCCAAT
CDS sequence (LotjaGi6g1v0312600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACCATCACCAAACGATTCTTCAGTCTACGCTCTGCGTATTCATCTTCTCTCTTCACCACCACCACCACCGCATC CTCCCTCCTCCTCCACACTCCCACGCGCCGATACTCCACCCCACCCCGCACCAGAACCCCACTCGAGAAACAGTTCGAGA CATGGGTCAACCACCTCAAACCCGGTTTCACCCCTTCCGACGTCGACCGCGCCCTCACCTCCGTCTCCGACCCCGATCTC GCCCTCGACATTTTCCGATGGACCGCCCAGCAACGCTCCTACAATCACACCGACCTCACCTACCTCACCATCATCAAACA CCTCATCGCCGGCCGCCGCTACCAGCAAGCTGAAACCCTCGTCGAGGAGGTCATCGCCGGCGCCTGCGACGGCTCCATAC CCCTCTACAACTCCATCATTCGCTTCTGCTGTGGTCGCAAGTTCCTCTTCAGTCGCGCCTTTGATGTCTACAACAAAATG CTCAGGTCTGAGGATTGCAAACCTGACCTTGAAACTTACACTTTGCTTTACAATTCGCTGCTTAGAAGGTTCAATAAGTT GCATGTTTGCTATGTTTATTTGCACGCGGTTCGGTCTTTGACGAAGCAGATGAAGGCTGTTGGTGTTATACCTGATACAT TTGTGTTGAACATGATCATTAAGGCTTATTCTAAGTGTTTAGAGGTGGATGAGGCGATTAGAGTTTTTCGCGAAATGGGG TTGTATGGGTGTGAGCCTAATGCTTATAGTTATAGTTATATTGCTAGAGGTTTGTGTGAGAAAGGGAGGGTGAATCAAGG GTTGGGGTTTTATAAGGAAATGAAGGAGAAGTGTTTGCGGCCGAGTACTAGTACTTATGTGATTATAGTTTGTAGTCTCG CTATGGATCGAAGGTTTGAGGATGCCATTGAGGTTTTGTTTGATATGTTGGGGAATTCTAGGTCCCCTGATCATCTCACC TACAAGACTGTTTTAGAAGGGTTGTGTCGGGAACGAAGAGCTGATGAAGCCTTTGACCTGCTTGATGAATGCAAGAAGAG GGATATTTCTATGAGCGAAAAGATGTACAAGACTTTGTTGGATGATTTGCATTATGTGTGCCGGGAGTAG
Protein sequence (LotjaGi6g1v0312600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATITKRFFSLRSAYSSSLFTTTTTASSLLLHTPTRRYSTPPRTRTPLEKQFETWVNHLKPGFTPSDVDRALTSVSDPDL ALDIFRWTAQQRSYNHTDLTYLTIIKHLIAGRRYQQAETLVEEVIAGACDGSIPLYNSIIRFCCGRKFLFSRAFDVYNKM LRSEDCKPDLETYTLLYNSLLRRFNKLHVCYVYLHAVRSLTKQMKAVGVIPDTFVLNMIIKAYSKCLEVDEAIRVFREMG LYGCEPNAYSYSYIARGLCEKGRVNQGLGFYKEMKEKCLRPSTSTYVIIVCSLAMDRRFEDAIEVLFDMLGNSRSPDHLT YKTVLEGLCRERRADEAFDLLDECKKRDISMSEKMYKTLLDDLHYVCRE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Gene3D | 43 | 187 | 145 | 4.3E-15 | ||
| PANTHER | 70 | 176 | 107 | 4.2E-44 | – | |
| ProSiteProfiles | 97 | 131 | 35 | 5.678 | ||
| ProSiteProfiles | 132 | 168 | 37 | 8.276 | ||
| Pfam | 136 | 180 | 45 | 4.0E-7 | ||
| TIGRFAM | 136 | 169 | 34 | 5.0E-5 | ||
| Gene3D | 188 | 276 | 89 | 7.7E-19 | ||
| PANTHER | 195 | 361 | 167 | 4.2E-44 | – | |
| Pfam | 211 | 259 | 49 | 3.3E-13 | ||
| ProSiteProfiles | 212 | 246 | 35 | 11.444 | ||
| TIGRFAM | 215 | 248 | 34 | 6.0E-7 | ||
| ProSiteProfiles | 247 | 281 | 35 | 10.83 | ||
| TIGRFAM | 249 | 282 | 34 | 2.2E-5 | ||
| Gene3D | 277 | 367 | 91 | 9.6E-13 | ||
| ProSiteProfiles | 282 | 316 | 35 | 8.364 | ||
| Pfam | 284 | 311 | 28 | 0.32 | ||
| TIGRFAM | 285 | 317 | 33 | 2.6E-4 | ||
| Pfam | 316 | 363 | 48 | 5.7E-8 | ||
| ProSiteProfiles | 317 | 351 | 35 | 10.534 | ||
| TIGRFAM | 320 | 352 | 33 | 2.6E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0312600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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