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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0317000 |
| Transcript ID | LotjaGi6g1v0317000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin; TAIR: AT4G18910.1 NOD26-like intrinsic protein 1;2; Swiss-Prot: sp|Q8LFP7|NIP12_ARATH Aquaporin NIP1-2; TrEMBL-Plants: tr|I3SMG3|I3SMG3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0317000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63461204..63464848) extracted from Lotus japonicus Gifu genome v1.2.
ATTCTTAATTTGTTTATTTTCTGAAAAGGTTGACATTTATTAATAATGTTCTACTAGTACTATCCCTCCATGATTGACCA TAAACTTTTCGCCTTGGGTTAGGCCAGACATGTAGTGGTGATGATAGGATGCATTTTTATAATTTTAATTTTGGTACTTG TAATGACATATTCTTTCATGCTTTATGCTATTTCAAAATTTTAAAAAATGAAATATAGAAGTTTAGCCAGCACTTAGGAG AGTTACTTTGGATGCAATCTCCTCACTGAGCTACAGTTTCAGTTTCATACTCCTGTAATTCTGTGTGGCAATCTCAGCTT TGTTTCACTACCACATAATCATGTTCTTCACTCCAAAGACTAAGCATCTGGAATTAGACTTACATTTTGTTCGAGAGAAG GTTCTCAGCAAGTCACTCAAAGTTTGTCATATTCCTGCTGATCTTCAAACAACAAATGGTCTGACAAAGCCTCTCACTTC TCTTAAGTTTATTGACTTGAGAACAAAACTAAAGAGTGTTTGAAATTTTTTCCTTAATCAAAACTGGACTAGTCAGGAGT GACCTGACCACTCTTTCGCGACTCCTCTACCAGGCGAGTGACACCACCGACTGGCAAACGACTCCTATATTTGGTGAGCT ATTAGCCGCGACCTCTTTCTTATGCGGGTGATCCCGTTGTACATTCACCACCGGCGATTCATGTATTATTATCAGTTTTA GGCGAACCTCATTCCCTTTTTTGGGTGGGTTAAGTTTGGATGAGTTATTTTGCACCAAGGCTTTGATTCATGTATTTAGG TTATACACCTCTATAAAATTGGAGATGACTTATTGTAATGGATATGTTCACTTGAAGGGGGCATGTTAGGTGTAAGTCTT AGCCTAATACTAATTTCTTGTATGTTTACATAGCTAACTGTTGTGTAATAGAGTTAGTTAGCATTATTGGAGTCTGTCAG AATTCTGTTACATTCTGTTATAAGTAGTTGTTAACTAGTCGTATTGTTCCTTAAGGAGCCACACTGCACTTAATCCAATA TCAGAGAATAGCCAATGAAAAATCATCAATTTAGATTGTTTGTTGCATGTACTAAAAATAGAGTTCAAAGGTTAATCTCT TTTGTTTCCAATTTATTGTTGCATTGCCAACTTCGTTTTCCAATTAGAACGTGCCAACCCATACCATTAGACAGAAGAAC AAATAAACCCAAAAATAAGACTTATCCCATTCATGCTCCTTTCTGCATTTATGGTGGATAGAAATATGACAGTAAACCAA ATATCATTAGAGAGTAGACCAAAATAAACCCAAAAATAGGACTAATACCAAACAAGCATTCTTTCATCTCATGCACAGCT CACAAGCTACAAATATCACAGTTTGCATAGATTAAATTTTATCTTAAAATTACGTTACAGAGTGGATCATGATTATGAGG TTTGATTATCCAAAAATATACAGAAACACTCATGAACCGGGCTGTACCATCGCTGAATATCCTTCTCCCATTCTGCTTTT TTAGGACTTTTGAGTGCCAATAAATTGGCATTGCACTCTCAGTTTTTCATATATCACCTTGTGCTCTAACCTTCAAGAGA TAAAGCCTATTCTATAGCATTCTTTGTCAAAGCATAACATAACATTCTTCTCCCACCACTTCTAATTAGCCTTTTCCATA TTCTTTGTCGATTGCAATGGCTGATGAGGTGGTTTTGAATGTAAACAATGAAGCCTCTAAAAAATGTGATAGCATTGAAG AAGACTGTGTGCCACTTTTGCAGAAGGTGCCTCTCCTAATCTTTTATTTCCTTCTCCATACAGATACAACAATTGAAATG CTATGTTTTCCAACTAGTCCCAACACATTTGGGATTCATAACATAAATTATTGTCAACTATAAAAAATATCAAATTGTTT TAGTATGTAGTCTCTTTTGTAATCAATTTGTTGATTATATGGAGCTTGAAAATTTGGTTAGAACTGACAAAAAAAATGAT TTTGTTGATTGTTGAATGCAGTTGGTAGCAGAAGTGTTGGGCACATACTTTTTAATATTTGCAGGTTGTGCGTCGGTGGT GGTGAACCTTAATAATGACAAGGTGGTGACACTTCCTGGGATTGCAATTGTTTGGGGACTGGCTGTTATGGTTTTAGTTT ACTCTATTGGTCACATCTCAGGTGCTCATTTCAACCCAGCTGTTACCATTGCTCATGTTACCACCAAAAGATTTCCCTTG AAGCAGGTGAACCAAATATAGCATTTTTCCACTTTCACTTTGGGTTTTTTTGTTTTGTTTGAACCAAATATCTTGTACGG AGACAATCCTGATCGAGCTGGTCAGGTAGTGCCGCTATGGACTCTAAATCTCTCCCTAACAAGATTTAACGTAGTTGTAT TCACAGGGACTCGAACCCGAAATATTGACATAAAATAAAACAATCTTATGTTAGTTGATACGCTTTTTTGGTGATTTCAC TTTGATTATTTAAGCTTCTATATATAGGAGAATGTGTTTAATTATTTTGTATGGATACAAAATAGGCACCAATTTTGGTA CCTTATTAATCTCAAAATGTTGAATTTTGCTTTATTTGAATCATATTGCAGGTACCAGCTTATATATTAGCTCAGGTCAT TGGATCCACCCTTGCAAGTGGAACTCTCAGACTTATATTCAGTGGAAAAGATAACCATTTTACAGGAACACTTCCTGCTG GTTCTGACCTGCAAGCTTTTGTTGTTGAATTCATAATCACTTTCCTCCTCATGTTCGTCGTCTCCGGAGTTGCTACTGAT AACAGAGCGGTAAAGTCTCATGTTCTTACATTAAAAATGTATGAACAAAATTTCTATAACTCTGCTTAATTATTCCTTTT TTTTTATTGAATCCTGCAGATTGGCGAGTTGGCTGGGCTTGCAGTTGGATCTACAGTAATGCTAAATGTGTTGTTTGCAG GGTATTAATCTATCTCATTACCTAATTGAATTAGCCAATTTTAGTGAACGTTTTTACCAAAAATTTAATAAAATTAAAAT GTGACACACTATTGGAAGCAAAGTTAAGCTAAGAACTTACAATGTGTGAAATTAAATTTGACAGGCCAATTACTGGAGCA TCAATGAACCCAGCAAGAAGCTTAGGACCTGCAATTGTGCATAATCAGTACAAAGGAATATGGATATACATGGTTTCACC AATTCTGGGTGCAGTGGCTGGTACATGGGCCTATAGTTTCATCAGAATCACCAACAAGCCTGTGCGTGAACTCACCAAGA GTTCCTCTTTCCTTAAAGGAGCTAAGTGATACACAAGAGTCAATGTATTATTTTCTCTTGATCATTTTGTTGGTTTGAAG ATCACCATGTACTAGGGTTCAACTGTAAGAAAGAATCACTAGCTAGTGTGTGAAAAGTAATCACTAGTTAGGGGTTTTTT GCAAATATATAACCCAGTAAAACAAGACAGCCAGTGGGAATGTAAACTAATGTTTCTATCAATTTTTTAACTTTAATTTT TGTTAATTAAATTGGAACTTTAATTTATCTCTTTACCAAGTATTTAACGCAAATATATTCACAACGAATCGGTCGGAAAT CTTTGCTTAAGCTAGAACAATCTTGTGTTTGTCAATATACGCGTG
CDS sequence (LotjaGi6g1v0317000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATGAGGTGGTTTTGAATGTAAACAATGAAGCCTCTAAAAAATGTGATAGCATTGAAGAAGACTGTGTGCCACT TTTGCAGAAGTTGGTAGCAGAAGTGTTGGGCACATACTTTTTAATATTTGCAGGTTGTGCGTCGGTGGTGGTGAACCTTA ATAATGACAAGGTGGTGACACTTCCTGGGATTGCAATTGTTTGGGGACTGGCTGTTATGGTTTTAGTTTACTCTATTGGT CACATCTCAGGTGCTCATTTCAACCCAGCTGTTACCATTGCTCATGTTACCACCAAAAGATTTCCCTTGAAGCAGGTACC AGCTTATATATTAGCTCAGGTCATTGGATCCACCCTTGCAAGTGGAACTCTCAGACTTATATTCAGTGGAAAAGATAACC ATTTTACAGGAACACTTCCTGCTGGTTCTGACCTGCAAGCTTTTGTTGTTGAATTCATAATCACTTTCCTCCTCATGTTC GTCGTCTCCGGAGTTGCTACTGATAACAGAGCGATTGGCGAGTTGGCTGGGCTTGCAGTTGGATCTACAGTAATGCTAAA TGTGTTGTTTGCAGGGCCAATTACTGGAGCATCAATGAACCCAGCAAGAAGCTTAGGACCTGCAATTGTGCATAATCAGT ACAAAGGAATATGGATATACATGGTTTCACCAATTCTGGGTGCAGTGGCTGGTACATGGGCCTATAGTTTCATCAGAATC ACCAACAAGCCTGTGCGTGAACTCACCAAGAGTTCCTCTTTCCTTAAAGGAGCTAAGTGA
Protein sequence (LotjaGi6g1v0317000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADEVVLNVNNEASKKCDSIEEDCVPLLQKLVAEVLGTYFLIFAGCASVVVNLNNDKVVTLPGIAIVWGLAVMVLVYSIG HISGAHFNPAVTIAHVTTKRFPLKQVPAYILAQVIGSTLASGTLRLIFSGKDNHFTGTLPAGSDLQAFVVEFIITFLLMF VVSGVATDNRAIGELAGLAVGSTVMLNVLFAGPITGASMNPARSLGPAIVHNQYKGIWIYMVSPILGAVAGTWAYSFIRI TNKPVRELTKSSSFLKGAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| PANTHER | 3 | 256 | 254 | 5.2E-156 | ||
| PANTHER | 3 | 256 | 254 | 5.2E-156 | – | |
| Gene3D | 15 | 252 | 238 | 4.7E-74 | ||
| Pfam | 25 | 235 | 211 | 3.7E-65 | ||
| SUPERFAMILY | 26 | 249 | 224 | 3.27E-71 | ||
| PRINTS | 29 | 48 | 20 | 4.4E-47 | ||
| CDD | 29 | 238 | 210 | 3.56557E-69 | ||
| Phobius | 31 | 53 | 23 | - | – | |
| TMHMM | 31 | 53 | 23 | - | – | |
| TIGRFAM | 33 | 235 | 203 | 1.5E-62 | ||
| Phobius | 54 | 58 | 5 | - | – | |
| Phobius | 59 | 79 | 21 | - | – | |
| TMHMM | 63 | 85 | 23 | - | – | |
| PRINTS | 68 | 92 | 25 | 4.4E-47 | ||
| Phobius | 80 | 107 | 28 | - | – | |
| ProSitePatterns | 86 | 94 | 9 | - | ||
| PRINTS | 105 | 124 | 20 | 4.4E-47 | ||
| TMHMM | 106 | 128 | 23 | - | – | |
| Phobius | 108 | 128 | 21 | - | – | |
| Phobius | 129 | 147 | 19 | - | – | |
| Phobius | 148 | 166 | 19 | - | – | |
| TMHMM | 148 | 167 | 20 | - | – | |
| PRINTS | 150 | 168 | 19 | 4.4E-47 | ||
| Phobius | 167 | 177 | 11 | - | – | |
| TMHMM | 174 | 196 | 23 | - | – | |
| Phobius | 178 | 197 | 20 | - | – | |
| PRINTS | 181 | 203 | 23 | 4.4E-47 | ||
| Phobius | 198 | 216 | 19 | - | – | |
| TMHMM | 216 | 238 | 23 | - | – | |
| Phobius | 217 | 238 | 22 | - | – | |
| PRINTS | 218 | 238 | 21 | 4.4E-47 | ||
| Phobius | 239 | 259 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0317000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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