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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0317000 |
| Transcript ID | LotjaGi6g1v0317000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin; TAIR: AT4G18910.1 NOD26-like intrinsic protein 1;2; Swiss-Prot: sp|Q8LFP7|NIP12_ARATH Aquaporin NIP1-2; TrEMBL-Plants: tr|I3SMG3|I3SMG3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0317000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63464993..63468798) extracted from Lotus japonicus Gifu genome v1.2.
CCTATATAAATCTACTGCATACTACGTGTGTACAGACAAGCAACCCCATACCATTAGTATTGACGAAATTTGAGGTTATT ATAAACCAAAAATAAGCCATTAATTTCATGCCCATAACTGCATTTTCGGTGAATCGTTGGACAAGCTTTCAATGCTTCTC TCACATCACAACCACAAATACCACATATAAAATTGTTACCTACAGAAACAGAACAAAGGAGATTGCAAATTGCATGGTGA TTGCTGAGAAATAAGGCACTAGCTCCCAGAAAAAAAAAAAGAGGTTGCATTCTCAAATTTCCTTCCCCATCTGGAAAGAA ATTGAACAAGTGCAATCTCTCAACATCAATCCATATAGCCTTTTTTCTACAGCATTGTTTGACAAAGCAGGGCATTTCTT AGGCTTTTCCTTATTCTCTGTCTGTCATGGCTGATAATTCAGGAAGCAGCGGAAATCACGAGGTGGTTTTTAATGTAAAT GGTGATGCCACCAGAAAGTGTGAAAGCATTGAAGAAGACTGTGTCCCTCTTTTGCAGAAGGTGTCTTTCTCTTTCCTTTT CCTTTCTTCCCAATTAGTCACAATCCATTAGGGTTTTATGAAATAAATTGTTTGTCTATTATTAAGTTCCAAACTATTTG ATTTAGTTGTATATTAGAATCCAGAATCCATGAAGGGTGTAGTCTCTTTTTGAATCAACTTATTGATTATATTATGGAGC TTGAAAATATGTGACAATTTGTTGATTGTTGAATGTAGTTGGTAGCAGAGGTGATAGGGACATACTTCTTGATATTTGCT GGGTGTGCTTCTGTGGTGGTGAACCTTAATAATGACAAGGTGGTGTCACTTCCTGGGATTGCAATTGTTTGGGGACTGGC TGTAATGGTTTTGGTTTACTCTATTGGTCACATCTCTGGTGCACATTTCAACCCAGCTGTTACCATTGCTCATGCTACCA CCAAAAGATTTCCCTTAAAGCAGGTGAATGAATCAAAATAGCCTTTTTACTAGATCACTTTGGTCAAATGTAAGATTTGC TAATATACAGGAGAATGTGATTCAATTATATGTAACATATTTTTGTCATTTTTCCTCAATACAAAATATGCACCAATTTT GCGTACCGTATTAAAGTTGAATTGAATTAAATACCTCTTTATACCTTCTTTCTTGTCTTTGCTATCTCAATTTGTCTCAA ATTATTGAGTTTTGTTTCATTTGAATCATATTGATTGTAGGTACCAGCTTATATAATAGCTCAGGTAATTGGATCCACAC TTGCAACTGGAACTCTCAGACTTATATTTAGTGGCAAGGAGAATCAGTTTACAGGGACACTCCCAGCTGGTTCTGACCTG CAAGCATTTGTGATTGAATTCATAATCACTTTCTTACTTATGTTCGTCGTCTCTGGAGTTGCCACTGATAACAGAGCGGT AAGATCTCATGTTCTTATATAATTATATTCAAGAAATGTATAACCAAAATATATATTCTCCTCAGTCCTCACCTACATAT ATAAACATTCTTCAGTCCTACTTCAGATACATATAGAATTATAGATCTTGTTGATTCATTTCAATTTTAATTCCTGCAGA TTGGTGAGTTGGCTGGACTTGCAGTTGGCTCTACAGTTCTCCTAAATGTGTTGTTTGCCGGGTATTAACCTATCTCAGAA CCTAACTGAAATATACCATTTAGTGCAGGATTTTACATTAAGAATGTACATAATTCCATAAAATTCAGATTTAAATCATT GCAGAAGCAAGGTCAAACTTATTAGAACTCATTTGTGCTTTGAAAATATATTTAACAGGCCTCCCACTGGAGCATCAATG AATCCAGCAAGGAGCTTAGGACCTGCTATTGTGCACAGTCAGTACAAAGGAATATGGATATACATCGTTTCACCGATTCT GGGTGCTGTGGCTGGTACATGGACCTACAGTTTCATCAGACAAACCAACAAGCCAGTGCGTGAAATTACCAAGAGTGCAT CTTTCCTTAAAGCAGCAAAACGTGGGGAAGCTGAATGATTTAACAGGGAACCTGAGAATGTTTCTTTTTCAGTTTTTCTT CATGTTATTATTTTGAAGATCACCGTGCATTAGGGTTGATGTGTTAGAAAAAGTCACAAGTTTTAGAGAGCCAAATGACC CTGTAATATAAAGCTTGAGGAAATGAATGTCCAGTTTCTTCTTATTCATGCATCATTGTGATATTTGTTTTTTGTTACAT TGGAAGTTGGTACAAGCAAATATGAATTAACCATCTAGTGAAACATTGAGCTTTATTCATAAAATTAGAGAAGGCAAGAT ATAAGATAATACATCCTTCAATGTTCACTAGGCAGTGGTGTAAAATATGAACACTCTCAAGGACGGAACTTGCAAGCAGT TTTGAGCTCTTCTGCTGGCTTGTCCCCAGCAAATCCAGCATCCACCCACGCAGAGTAGCCTCCCCCCATGTTAAAAACAT GTTTATATCCCTACACAATACGTGATCAAACGGACGTCAGCACTTTGAGCCAAAAAGTAAACGAAACTCTTTTTATGGAT TGGGATGAAAGTTCATTCACGTTACATTCAACTGATATTTCAAACACACTAAATTCGTTTACCAAGTTTAGTATGTATTT TTCAGTTCTCCATTTACTTTATTCATTTGGCTCTACAAGACTACAGAATAAATCATGACAAAACACATACACAGTACAAT AAACCATAAACTTAATTAAAATCTCAATCTACCCTTATAATGCATGTTTATTCTTTAAAGTGCACTTTTGACACCTAGAG GAGGCAAATTTGTATTAGTTGTCATTCATACCAAAATATGCATGTAGCAGTAACCTTGAACTAAGATTGAGAATTTGAGA TTAGTCACAGACTTACTGAATCAAGCAAATCTATAACAGCTTTGCGTCCTCTTCCTCCACTGTTGCACGCCTGAATTTGT GATCCATTATCATAAGTCAACATCTTTGATCTTTTTCTTGAGATTGTTTCTGTTTTATATTTTAGAAGGCTAGCTTAGAT TTCTTACCACAAGCAAGTGATCCTCACTCTTGCATACTGCTGCTACCTGGTCAAGAAAATCAGGATTTTTCACCCTTCCT GTTGATTTGCAAAGAGGACAAAGAAAACAAGTGTCATTGAAGAAAGTTTGCTGAATTTATTCATCCAAAATATTTTCATA CTTTGTGGCTGCATTTTCTCTTAAGGACTAGAAAACTGAAATCAAAAGATGAAGCTACCATTCTATAATCCAATATACCT GCTTCTGTGCTAAACATATAGGCGATATTTAAAGCATTATCAACATGGCTTTTGTTGAATTCCTCAACTGTTCTGTTCAT AGGAAAAAAGAAAGGACATTAGTTTCTTCTTTTTCACTGGTTTTTTCCTAAAAAAAACAAAAAAGAAGATGAAATTGGAG AAACTTAATCCCTTTGATACCTCACATCGAGATAACGGTAACCAGATGAATTGAGCAGATCTTTGGCAGCTTCGACATCC ACATTCACAACATCTTGATGACTGCAAACAGGGATAAATCAGAATGTGAGTAGTGCATATGACATAATTAAAGTCATAGG GTTTTCAAACCAAGGCCATAAACTACAGGCATAAAATGGAACATATTCTGAACTCTTACTCTTTAGGTGCATCCATTCCT TTCTTTGCAGATAAAGTTGATTTAGCTCTGATCAGGAAAGTCTTGAATCCCAGTTACTTGTATATATGAAGTGTATTTAT GCATGTAAAATAGCTTCGCCAAGGCCTGTGATTCTCTAAAGTTGAC
CDS sequence (LotjaGi6g1v0317000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATAATTCAGGAAGCAGCGGAAATCACGAGGTGGTTTTTAATGTAAATGGTGATGCCACCAGAAAGTGTGAAAG CATTGAAGAAGACTGTGTCCCTCTTTTGCAGAAGTTGGTAGCAGAGGTGATAGGGACATACTTCTTGATATTTGCTGGGT GTGCTTCTGTGGTGGTGAACCTTAATAATGACAAGGTGGTGTCACTTCCTGGGATTGCAATTGTTTGGGGACTGGCTGTA ATGGTTTTGGTTTACTCTATTGGTCACATCTCTGGTGCACATTTCAACCCAGCTGTTACCATTGCTCATGCTACCACCAA AAGATTTCCCTTAAAGCAGGTACCAGCTTATATAATAGCTCAGGTAATTGGATCCACACTTGCAACTGGAACTCTCAGAC TTATATTTAGTGGCAAGGAGAATCAGTTTACAGGGACACTCCCAGCTGGTTCTGACCTGCAAGCATTTGTGATTGAATTC ATAATCACTTTCTTACTTATGTTCGTCGTCTCTGGAGTTGCCACTGATAACAGAGCGATTGGTGAGTTGGCTGGACTTGC AGTTGGCTCTACAGTTCTCCTAAATGTGTTGTTTGCCGGGCCTCCCACTGGAGCATCAATGAATCCAGCAAGGAGCTTAG GACCTGCTATTGTGCACAGTCAGTACAAAGGAATATGGATATACATCGTTTCACCGATTCTGGGTGCTGTGGCTGGTACA TGGACCTACAGTTTCATCAGACAAACCAACAAGCCAGTGCGTGAAATTACCAAGAGTGCATCTTTCCTTAAAGCAGCAAA ACGTGGGGAAGCTGAATGA
Protein sequence (LotjaGi6g1v0317000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADNSGSSGNHEVVFNVNGDATRKCESIEEDCVPLLQKLVAEVIGTYFLIFAGCASVVVNLNNDKVVSLPGIAIVWGLAV MVLVYSIGHISGAHFNPAVTIAHATTKRFPLKQVPAYIIAQVIGSTLATGTLRLIFSGKENQFTGTLPAGSDLQAFVIEF IITFLLMFVVSGVATDNRAIGELAGLAVGSTVLLNVLFAGPPTGASMNPARSLGPAIVHSQYKGIWIYIVSPILGAVAGT WTYSFIRQTNKPVREITKSASFLKAAKRGEAE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 266 | 266 | 8.0E-158 | ||
| Phobius | 1 | 38 | 38 | - | – | |
| PANTHER | 1 | 266 | 266 | 8.0E-158 | – | |
| Gene3D | 24 | 259 | 236 | 1.4E-73 | ||
| Pfam | 33 | 243 | 211 | 8.9E-64 | ||
| SUPERFAMILY | 34 | 257 | 224 | 1.96E-71 | ||
| CDD | 37 | 246 | 210 | 5.11676E-69 | ||
| PRINTS | 37 | 56 | 20 | 3.4E-46 | ||
| Phobius | 39 | 61 | 23 | - | – | |
| TMHMM | 39 | 61 | 23 | - | – | |
| TIGRFAM | 41 | 243 | 203 | 2.8E-61 | ||
| Phobius | 62 | 66 | 5 | - | – | |
| Phobius | 67 | 87 | 21 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| PRINTS | 76 | 100 | 25 | 3.4E-46 | ||
| Phobius | 88 | 115 | 28 | - | – | |
| ProSitePatterns | 94 | 102 | 9 | - | ||
| PRINTS | 113 | 132 | 20 | 3.4E-46 | ||
| TMHMM | 114 | 136 | 23 | - | – | |
| Phobius | 116 | 136 | 21 | - | – | |
| Phobius | 137 | 155 | 19 | - | – | |
| TMHMM | 156 | 175 | 20 | - | – | |
| Phobius | 156 | 174 | 19 | - | – | |
| PRINTS | 158 | 176 | 19 | 3.4E-46 | ||
| Phobius | 175 | 185 | 11 | - | – | |
| TMHMM | 182 | 204 | 23 | - | – | |
| Phobius | 186 | 205 | 20 | - | – | |
| PRINTS | 189 | 211 | 23 | 3.4E-46 | ||
| Phobius | 206 | 224 | 19 | - | – | |
| TMHMM | 224 | 246 | 23 | - | – | |
| Phobius | 225 | 246 | 22 | - | – | |
| PRINTS | 226 | 246 | 21 | 3.4E-46 | ||
| Phobius | 247 | 272 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0317000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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