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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0317200 |
| Transcript ID | LotjaGi6g1v0317200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin; TAIR: AT4G18910.1 NOD26-like intrinsic protein 1;2; Swiss-Prot: sp|P08995|NO26_SOYBN Nodulin-26; TrEMBL-Plants: tr|I3SLV4|I3SLV4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0317200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63471415..63475437) extracted from Lotus japonicus Gifu genome v1.2.
CAGAGTGTCATGCAAATACTCACCTTCGATACTCACTTGATCGTATCGAAGGAGGCAATTCCTTTTTTTTTTTTAAATAA GCAAAGGAGGCAATTCCTAGTCCAACAAAATAATAGTCATTCCATCTTGCTAGATAATAGGGTTATTATGTGATTTGTGT TATGCCATAGTCCAACTCTGCAATCTATTTTTTTTCCGTTTTTTAGACGTTAACGCTGCAATCTTACTAATCAACAATTG CTACTAGTAAAAACAAAAAAAGTGAGATAAGAAACTAAAACATATCAATGTAGTTGTTTGACAGTCCAATCTCTGAATAT CTGTGTGTCCCCCGAGCCTGACCCTTCCACTTTTTGAACATTTGGGTTGCCCATAAATTGGAGTTGCCCTCTCGGTTCTT TATCATCATTTGTGCTCTACGAGACAAAGCCTTTTTCAAAGCAAAGCATTCATTCTTCTCACTCAATTTCTTACCTTATT CTCTCTGTCGGTTATGGCTGGGAATTCAGCAAGCAATAATGGAAACCAGGATGTGGTTTTAAATGTTAATGCTGAAGCCC CTAAAAAGCGTGAAGTAATCAAAGAAACTGAAGACTGCGTGCCTCTTCTGAAGAAGGTGGCTCAAGCTCCTATTCTTTTA CTTTGCTTCTAGTATACACAAAACAAAACTCATCAAAACTCATGGATTTCATAAAAATGAATCGTTATCTCTTATAAAAT TGCAAACTGTTTAAGTTGTTTTTAGAATCCCTGAAGTCAGCGTGTAGTTTCTTTTGAATTCAACATATCGATTATATGGA GCTCTAAAATTTGCTAAAATGGTTTTGTTTTGTTGATTGTTGTATATGTAGTTTGTAGCAGAGCTGGTGGGGACCTACTT CTTGGTATTTGCAGGGTGTGCTGCCATTATAGTGAACCTTAGCAATGATAAGGTGGTGACACTTCCCGGGATTGCCATGG TTTGGGGACTGGCTGTTATGGTTTTGGTTCTATCTATTGGCCATATCTCTGGTGCTCATCTCAACCCAGCTGTTACCCTT GCTCATGCTACCACCAAAAGATTCTCCTTCAAGCAGGTGAATCAAATAAACTGTTTTCCCACTTCCACTTTTGTTATCTG TTTGAGGTATGTCCACGAGAGAAGATAACGTTCTTCAATTATTTTTTGTAATATATTTTTGGCATTTTGCTTCGATACAA AATGGACCCATTTTTGGTTCACATTATATATTATTATGTAATGATTGTCTCACAGCTTAGCTGTTACGTGTTAGACACAT GAATGATTATATTTCTAACACGCGTTTTTAAGTAATAACTCACTTGGATTTCAAGTATGAAGAATGCACAAGCCCATCAA TCATTGGTTAATATTCAACTTTTTATTATTATAAGAATTGAGGTAGACAATGATCGAACTCTAGATCACTAATTAATCAG AATCTCAATATATCGTACCAATTATTCAACTCAGATGTAAGAGTTTTGTCCTTAATAAAGACCATCTTGGTCATATCTCT ATTTAATACAAGTTTTTAACACATTTTCTCATGTCTGGAGTTAAAAATTTAGAGTGTGAAATTTACAAAATCAAACGTCC ACAAGTGTGCCAAATATGAGAGTTCTCCGCCAAATAAATCTAAATACGCTCTGATATATCACATCTTAATTTCATTTTCC TTCTTCTCTTCTTTTTTTTTATTTCTTGTGATTGTGATGGGATTATTGTTTTGAATTGAAATACTCAAACTTTCTTGGGG TCACTAATTGAAATACCTCTATCAAACGTCTTTTTCTTTGCCTTAGGCGTATTATGCATGGTTAGCCATAATTCTTAAAA ACAAATGCGTACCTGTCTCAACTATTCTAAAATAATTGAATTTTGTTTCATCTGAATCATATTTTGCAGGTACCAGCTTA TTTACTTGCTCAATTTGTTGGAGCCATACTTGCAAGTGGAACTCTCAGACTCATATTTACTGGCAAGGAGAATCATTTTC CAGGAACACTTGCATCTGGTTCTGAGCTGCAAGCTTTTGTGTTTGAATTCATTTCCACTTTCCATCTCATGTTTGCAATT TCGGGAGTATCCACAGACAACAGAGCTGTAATGACTCCTGTTCTTCCTCTCTTAGTTATACGTTCCTCTCTTTATTATCT TTCAAGATAAAAGAAAATAATCAAATCTAAAATCTAATTAATTTATCAGAATTTTTTTGGAAATTGCATATTTACTCTTT ATATTTCGACTAGTACTGGAAAGTTAGTACTGTCATATATATATATATATATATATATATATATATATATATATTGCTAA TTAATGTTAGGATTAAATATGTTAAGTCTCTATAAAATAAGTTTGAATTGGATTTGATTCTAAAAATATTATAATTTTTA ATCTATAATTTTAATGAAATAAGTAAAATTAATTCTCGTGTTGGCCATCATAAAATGAAAATCAGAAATTAACTCCACAT ATTTTTATTAATATTGAGGATTGAATTAAAGCTATAATATTTATCAAAGACCAAATTAAATCTAATTCTTCCATATTTTA CATTGATAACATATGTAACTCTTAATGTGATTTTAAACTATATGGACAGACATGTAACTATACATAATTTTTTATATTAA GAAAAGATAAATAAGAATTGAGATATAGAGATGTGCCAACATGGTTATTATTTAAATTTACTTATTCCATAAACAGATTT GTAATGTTTCAAGTAAGACACATATGTTCTCGAATGATTGTTCAAGTGGTAAGAGCTATGAGACATGTATGTTGGGTGGG GGATGTCCATAAATTAATTTCTAGAGAATGCAATTTATCTTTTCAATAGTAAAAAAAAAAAAGTAAGGCGCATCAAAATC TAGATTTGACTATTCATCAACCCTGTTGTTTGCTATGTTATTTTACTCAAATTTATTCATTTTACTTTTAAATCTTGCAG ATTGGTGAAATGGCTGGACTTGCAATTGGGGCTACGATACTGCTAAATGTGATAATTGCCGGGTATTAGCTTTAAACCTA ATTATTGAATACACCATTTTAGTGCTGGCTTTTAAATCAAGAAGCATTGTTAACTTAGAGGATCTATAATGAGATTACTT ACCTCATTGCTTATAAATTATAAGCAATGTTGTTTAGTTTTTTTAGCATTGGAACATGCTTATGTGAAAAGATTGTTTAA AAATAAGCAGTTGTGCTTCCAAAAGCAATTGTTGCATAGGGTGATTTGCGATTATAAATACAATTTATTCTCTCATGTCT CAACCATTCCGTCTCTCTCACGTGGAACTAAAAAAATAAGAAACTATATATATATCATTAGAGTAAAATCTGTATAAATT GCTTAAATTTTATGTGACAATTGGGTCTACACACGAAGAGTATTAAACAACTCAAATAAGAAACCACTATTGTGGACGCT CTTACAACTTGTTTGTGCTTGACATCATATTTGACAGACCAATCACTGGAGCATCGATGAATCCAGCAAGAAGCTTAGGA CCTGCTATTGTGCACAGCGAGTACAAAGGAATATGGATATATTTGGTGTCACCAGTTCTAGGTGCTGTGGCGGGTACATG GTCGTATAATTTCATCAGGTACACCAACTACACTTTACATCAGAAACCAAGAGCCCCTCATTCCTAAGCGGAGGAGCTAA GTCTGGTAGCACCAAGTCTCAAGCCCAATCAGTTAGGCTCAAGAGGACAATAAAGTTATCTAGTTTCTAGAGGATTATGT TTAAGGCCCATTCGGTTATGTTATTTTGTCTTGTGTGATTTTATTTTACTATCCAGAATATTCTACTTAATGGATGATTG TCACATGTATGGTCAATGGTCATCCTTATCTTAGGAAATATGGGCCTATGTAGTGTATGTTTATTATCTTTTTGAAAATA AGATGAAAATTGAGGTAAAGCTCAGCCAAGATTTCTATCTTATTGTACGAGTTTTCTATGGTTTTCATTAGAATAATAAT TGGTAAAAATGATCTGCTACCAA
CDS sequence (LotjaGi6g1v0317200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGGAATTCAGCAAGCAATAATGGAAACCAGGATGTGGTTTTAAATGTTAATGCTGAAGCCCCTAAAAAGCGTGA AGTAATCAAAGAAACTGAAGACTGCGTGCCTCTTCTGAAGAAGTTTGTAGCAGAGCTGGTGGGGACCTACTTCTTGGTAT TTGCAGGGTGTGCTGCCATTATAGTGAACCTTAGCAATGATAAGGTGGTGACACTTCCCGGGATTGCCATGGTTTGGGGA CTGGCTGTTATGGTTTTGGTTCTATCTATTGGCCATATCTCTGGTGCTCATCTCAACCCAGCTGTTACCCTTGCTCATGC TACCACCAAAAGATTCTCCTTCAAGCAGGTACCAGCTTATTTACTTGCTCAATTTGTTGGAGCCATACTTGCAAGTGGAA CTCTCAGACTCATATTTACTGGCAAGGAGAATCATTTTCCAGGAACACTTGCATCTGGTTCTGAGCTGCAAGCTTTTGTG TTTGAATTCATTTCCACTTTCCATCTCATGTTTGCAATTTCGGGAGTATCCACAGACAACAGAGCTATTGGTGAAATGGC TGGACTTGCAATTGGGGCTACGATACTGCTAAATGTGATAATTGCCGGACCAATCACTGGAGCATCGATGAATCCAGCAA GAAGCTTAGGACCTGCTATTGTGCACAGCGAGTACAAAGGAATATGGATATATTTGGTGTCACCAGTTCTAGGTGCTGTG GCGGGTACATGGTCGTATAATTTCATCAGGTACACCAACTACACTTTACATCAGAAACCAAGAGCCCCTCATTCCTAA
Protein sequence (LotjaGi6g1v0317200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGNSASNNGNQDVVLNVNAEAPKKREVIKETEDCVPLLKKFVAELVGTYFLVFAGCAAIIVNLSNDKVVTLPGIAMVWG LAVMVLVLSIGHISGAHLNPAVTLAHATTKRFSFKQVPAYLLAQFVGAILASGTLRLIFTGKENHFPGTLASGSELQAFV FEFISTFHLMFAISGVSTDNRAIGEMAGLAIGATILLNVIIAGPITGASMNPARSLGPAIVHSEYKGIWIYLVSPVLGAV AGTWSYNFIRYTNYTLHQKPRAPHS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 41 | 41 | - | – | |
| PANTHER | 4 | 258 | 255 | 4.7E-136 | ||
| PANTHER | 4 | 258 | 255 | 4.7E-136 | – | |
| Gene3D | 27 | 260 | 234 | 1.7E-68 | ||
| SUPERFAMILY | 37 | 257 | 221 | 3.53E-67 | ||
| Pfam | 37 | 246 | 210 | 3.8E-61 | ||
| PRINTS | 40 | 59 | 20 | 1.2E-45 | ||
| CDD | 40 | 249 | 210 | 1.14869E-62 | ||
| Phobius | 42 | 64 | 23 | - | – | |
| TMHMM | 42 | 64 | 23 | - | – | |
| TIGRFAM | 44 | 246 | 203 | 3.9E-58 | ||
| Phobius | 65 | 75 | 11 | - | – | |
| TMHMM | 74 | 96 | 23 | - | – | |
| Phobius | 76 | 98 | 23 | - | – | |
| PRINTS | 79 | 103 | 25 | 1.2E-45 | ||
| ProSitePatterns | 97 | 105 | 9 | - | ||
| Phobius | 99 | 118 | 20 | - | – | |
| PRINTS | 116 | 135 | 20 | 1.2E-45 | ||
| TMHMM | 117 | 139 | 23 | - | – | |
| Phobius | 119 | 139 | 21 | - | – | |
| Phobius | 140 | 158 | 19 | - | – | |
| TMHMM | 154 | 176 | 23 | - | – | |
| Phobius | 159 | 177 | 19 | - | – | |
| PRINTS | 161 | 179 | 19 | 1.2E-45 | ||
| Phobius | 178 | 188 | 11 | - | – | |
| TMHMM | 188 | 207 | 20 | - | – | |
| Phobius | 189 | 208 | 20 | - | – | |
| PRINTS | 192 | 214 | 23 | 1.2E-45 | ||
| Phobius | 209 | 227 | 19 | - | – | |
| TMHMM | 227 | 249 | 23 | - | – | |
| Phobius | 228 | 249 | 22 | - | – | |
| PRINTS | 229 | 249 | 21 | 1.2E-45 | ||
| Phobius | 250 | 265 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0317200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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