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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0317300 |
| Transcript ID | LotjaGi6g1v0317300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin; TAIR: AT4G18910.1 NOD26-like intrinsic protein 1;2; Swiss-Prot: sp|Q8LFP7|NIP12_ARATH Aquaporin NIP1-2; TrEMBL-Plants: tr|I3TA30|I3TA30_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0317300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63481020..63485115) extracted from Lotus japonicus Gifu genome v1.2.
AGCAACGGTTCATTATGTGATTTTTCATGTGACCATGCTCCAACAATTGGTAGTAAAAAAGTAACAAACACATTAAATGC GCGCAGTTTGGTTGCTCTATGTCATCTTCTTTAATTAATTTCATATGATCTGTGGAAATTTTGAACAAGTCCAACCTCTG AATATCTTTATGTCCCCTGACCCTTCCTTTTTTTGGACTTTTAGGTGCCCATAAATTGAAGTTGCTCTCTCGGTTCTTCA TCATTTGTTCTCTCCCAGACAAAGCCTTTCAAAGCAGGGTATTCTTCTCAGTTCTCAGTACGTACTCCATTTCTTAGCTT ATTCTCTGTGTCGGTGATGGCTCAGAACACAGCAAGCAATGGAAACCATGATGTGGTTTTAAATGTTAAAGCTGATACTG ATGCCTCCAAAAAGTGTGATGGCATCAAAGAAGACTGTGTCCCACTGTTTCAGAAGGTGCCTCAAACAAAACTCATCAAA ATGCTCTGTTTTCACTGTTTATTCCCAACTCCCAACGCACATGCATGAACATTTGATAAAAATGATTTGTTATCTCTTAT AAATTATTTTTTTTTTGTTTTATTTAGAATCTCTGAAGTGTGTAGTCTCTTTTTAAATCAATTTAATTATTGGTTATATG GAGCTTGAAAATTTGATTTGATTTTTGAATATGTGCGTAGTTGGTAGCAGAGGTGGTGGGGACATACTTCTTGATATTTG CAGGGTGTGCTGCTATTGTAGTGAACCTTGGCCATGATAAGGTGGTAACACTTCCTGGAATTGCAATTGTTTGGGGACTC GTGGTTATGGTGTTGGTTTACACCCTTGGTCACATCTCCGGTTGTCATCTGAACCCAGCTGTTACCATTGCTCATGCTAC CACCAAAAGATTTCCCCTCAAGCAGGTGAATCAAAGTCAAATTTAGTTTACCCTTTTTTTCACTTTCACTTTTGATATTC TAAATTCTAAAATATGAGCTAGTATATAGATGCTCTAGATTGTCGGCGGTGGTTAGAAAAAATCCTCTGTTAGTTAGTGA TGTAATGTTGATACAACGGACAACAAAGGAAGTATTGTAAATTAGCACTCTAACACTCAAACTAGTATGTTGATATTTAA AGAAAAGGCTTATTAGCACTTTTGGTCCCCTAGGTTTCTAAATTGTGCAAACAAGGTCCCTCAACTTTAAATATAGCATT TCGCTACCTCCACGTTAGACTCCGTTAGCACTTTTGGTCCCTCACCAGTTTTCCGTCCAAAAACTCACGGTTCTAAGGGT AAATAGGTAATTATGCAAACAAAATTAATTAAAATATTAAAAAAAATTAAAAACCTAGAAAATGCCCCGCTCTTCATCTT CCTCATCACCTTGCCCAGAAAACCCAGGAAAAAAAAAATAAAACTTCCTCTCCTAAACATCTTTATCTTCTGCAACTTTT TCCTAGAAAATCAATTAAAACTCAAAAAATCAATCAAAGAAGAATACCCACCATCTCTCCCTTTTCTCTTCCCTATCCCC TCAAACTCTCATCAATCAATGGCTTCATTTGTGGCGAGAGTAGAGATATAAAAATGGCAGAAGAAAAATTAGAGTTCAGC GACAAGCAGGAAGTTGAAATCGCCAAATGGTTCCTCCTCAACTCTCCCCTAATTAAATCCAATACATTTTCCTCTCTTTC CCATGAATCTGAACCAATTATTTTTTGCAATTCAATGTTTCTGCAAATGTGAAATTCATTCTCAACAACAAATTATGTTA TGTTCTGCAATTCAATTATATCTTCGCACCACCGAAAGCAGCGCTCCTCCGTCCCGAATCGCACGGCCAAAGCCACCATC GTGTAAACTGTGTCGTCGTCGAGCCCCAAGCTACGATGTCCATTCTCTTCCTCTCGATCTTGTCATTCTCCACTCTTGAT GCCACTACCACTTCATCTCTCCACACTTATGCTCGAATCTGGGACCAGATGTGGGTTGGAAGAGGCTGAGGGACGAGATC GACGGATTCGACGGTTGTGGGTTCAGAGGAAGGGATTTGACGGTGGTATTGGTTCAGAGAGGAGAATCGGTGTTTTTGAG AAGGGGATTTGAAGGGGTTGGGATGGCAGAAGAAGAAAAAGAGAGAGATAGAAAAATGATGACGATGAGAAGATGATGAT TGAAGAAGATGATGTTTTTTTTAACGTGAAGAAGATGAGATGATATTGTAATCCTTTTTTTTTGTTACAAATGATATTGT ATTCTGTTTTTTTTTTCCTTCTCCAGAAAACCATATTCTGTTTTTTAAATTTCTTTAAATATTTTAGGATTTTTTATTTT TTTTTAATTAATTTTATCAATTTAAATTATGTTAAAACATCCACATCAGCAAAAACGTTAGTTTTTGGACGGAAAACTGG TGAGGGACCAAAAGTACTAACAGAGTATAATGTGGAGGTAGCGAACTGCTATATTTAAAGTTGAGGGACCTTGTTTGCAC AATTTAGAAACTTGGGGGACCAAAAGTGCTAATAAGCCTAAAGAAAATCTAAAAAGTTATAGAAGAATAATAAATTGGTA ACATGATTAAGATGTTTAATTATGTGTGAATCATAAAATTTGTGTTTATAAACACTGTGAGAGTCGTATTTGAGACATTG TGTCTTCACGAAGTCTTTACAGAGTAACTTTCAAGATGATTACTACCCTCAAGCAGCCTTACAATTGTATTATAAAAGTG TTGACTTTGTTATGCTTATCTGACTGTTACTGTTGGACGAGATAAAATTTTCTTAATAATTCCAGTGGCCAACATAGATC CACTTAATTGTGACCTTCAAACCCTCTCGCCGCAACACGATATTAGGCTTAGTAATCTTTATGCTGAACGAAACAACTCT GGTTTTTTGTTGAGTTCCTAATATACAGGAGAACGTGCTTCAATTATTTGTAGCATAGGCTTATCATTTCCCTTTTGGTA CCTCGTCATTTGTTTATTTGTCTTTTTCTTTGTCTTTTCTCTATAGGTTATTAGGCGTATTATATGCATATCTAATCTTA AATAGTCGAATTTGTTTCATTTAAATCATATTGGTTGCAGGTACCAACTTATATACTAGCTCAGTTAGTTGGAGCCACAC TTGCAAGTGGAACTCTTAGGCTCATATTCAATGGCAAGGAAAACCATTTTCCTGGAACACTAGCTTCTGGTTCTGACCTT CAAGCTTTTGTGGTTGAATTCATAACCACTTTCTATCTCATGTTTGTAATTTCTGGAGTTGCCACGGACAACAGAGCTAT TGGTGAATTGGCAGGGCTTGCAATTGGGTCTACCATCCTGCTAAATGTCATGATTGCCGGGTACTACTTTAAAACCTAGT AATAATTGAACACACGTACCATTTTATTGCTGACTTTTAATAAATCAAGAATATTACACTATCCGAATAAAATTAACATT TAAATTATACTACCCCTAGTAATTATCATTAAATTTGACTCAGGCCAATCACTGGAGCATCAATGAATCCTGCAAGAAGT TTAGGACCTGCTATCGTACACAACGAATACAAAGGAATATGGGTATTTATGGTGGCACCAGTTCTAGGTGCAGTGACGGG TACATGGGTGTATAACTGCATCAGGTACACCAACAAGTCTGTGCGTGAGATCACTCAGAGTGCCTCTTTCCTACGGGGAG GAGCAAAGTAGTTTCACAGCTAGCTAGTGACTGCAAGGATGCTCTGTTAAAGATCAACACGTGTCAGGGTTGAAGTATTA GAAAGAATGAACTTTTTAATTAGAATGACAAATAACGTTGTCATAGCTAGCTTTTGAGAAAATGAAAAAGCATGGTTGTT TTTCTCACCAGTGTGAATCAATTAATTATCAATTACATCAAAAGTTGTAGTTGCAAATTTGGATTTTCCACCTTATTAGT TAACTCGCGGTATCAACTTCTCATGGTAAAGAAAGACGGTTTTTTTATAACATGAGAGTGTAATGGTGTATTCATATTGG GACTTTTATGAATGAAGATTATAATTATATACTCTAAATTAAATTACATCAACGATGAATAGATAATGAGAGTATATATG AAGAGAACAGACCCTT
CDS sequence (LotjaGi6g1v0317300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCAGAACACAGCAAGCAATGGAAACCATGATGTGGTTTTAAATGTTAAAGCTGATACTGATGCCTCCAAAAAGTG TGATGGCATCAAAGAAGACTGTGTCCCACTGTTTCAGAAGTTGGTAGCAGAGGTGGTGGGGACATACTTCTTGATATTTG CAGGGTGTGCTGCTATTGTAGTGAACCTTGGCCATGATAAGGTGGTAACACTTCCTGGAATTGCAATTGTTTGGGGACTC GTGGTTATGGTGTTGGTTTACACCCTTGGTCACATCTCCGGTTGTCATCTGAACCCAGCTGTTACCATTGCTCATGCTAC CACCAAAAGATTTCCCCTCAAGCAGGTACCAACTTATATACTAGCTCAGTTAGTTGGAGCCACACTTGCAAGTGGAACTC TTAGGCTCATATTCAATGGCAAGGAAAACCATTTTCCTGGAACACTAGCTTCTGGTTCTGACCTTCAAGCTTTTGTGGTT GAATTCATAACCACTTTCTATCTCATGTTTGTAATTTCTGGAGTTGCCACGGACAACAGAGCTATTGGTGAATTGGCAGG GCTTGCAATTGGGTCTACCATCCTGCTAAATGTCATGATTGCCGGGCCAATCACTGGAGCATCAATGAATCCTGCAAGAA GTTTAGGACCTGCTATCGTACACAACGAATACAAAGGAATATGGGTATTTATGGTGGCACCAGTTCTAGGTGCAGTGACG GGTACATGGGTGTATAACTGCATCAGGTACACCAACAAGTCTGTGCGTGAGATCACTCAGAGTGCCTCTTTCCTACGGGG AGGAGCAAAGTAG
Protein sequence (LotjaGi6g1v0317300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQNTASNGNHDVVLNVKADTDASKKCDGIKEDCVPLFQKLVAEVVGTYFLIFAGCAAIVVNLGHDKVVTLPGIAIVWGL VVMVLVYTLGHISGCHLNPAVTIAHATTKRFPLKQVPTYILAQLVGATLASGTLRLIFNGKENHFPGTLASGSDLQAFVV EFITTFYLMFVISGVATDNRAIGELAGLAIGSTILLNVMIAGPITGASMNPARSLGPAIVHNEYKGIWVFMVAPVLGAVT GTWVYNCIRYTNKSVREITQSASFLRGGAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 267 | 267 | 4.1E-149 | ||
| Phobius | 1 | 40 | 40 | - | – | |
| PANTHER | 1 | 267 | 267 | 4.1E-149 | – | |
| Gene3D | 28 | 262 | 235 | 2.0E-70 | ||
| SUPERFAMILY | 36 | 259 | 224 | 1.44E-67 | ||
| Pfam | 37 | 245 | 209 | 6.3E-63 | ||
| PRINTS | 39 | 58 | 20 | 6.1E-46 | ||
| CDD | 39 | 246 | 208 | 6.03008E-66 | ||
| Phobius | 41 | 63 | 23 | - | – | |
| TMHMM | 41 | 63 | 23 | - | – | |
| TIGRFAM | 43 | 245 | 203 | 1.1E-59 | ||
| Phobius | 64 | 68 | 5 | - | – | |
| Phobius | 69 | 89 | 21 | - | – | |
| TMHMM | 73 | 95 | 23 | - | – | |
| PRINTS | 78 | 102 | 25 | 6.1E-46 | ||
| Phobius | 90 | 118 | 29 | - | – | |
| ProSitePatterns | 96 | 104 | 9 | - | ||
| PRINTS | 115 | 134 | 20 | 6.1E-46 | ||
| TMHMM | 116 | 138 | 23 | - | – | |
| Phobius | 119 | 138 | 20 | - | – | |
| Phobius | 139 | 157 | 19 | - | – | |
| TMHMM | 158 | 177 | 20 | - | – | |
| Phobius | 158 | 176 | 19 | - | – | |
| PRINTS | 160 | 178 | 19 | 6.1E-46 | ||
| Phobius | 177 | 187 | 11 | - | – | |
| TMHMM | 184 | 206 | 23 | - | – | |
| Phobius | 188 | 207 | 20 | - | – | |
| PRINTS | 191 | 213 | 23 | 6.1E-46 | ||
| Phobius | 208 | 226 | 19 | - | – | |
| TMHMM | 226 | 248 | 23 | - | – | |
| Phobius | 227 | 248 | 22 | - | – | |
| PRINTS | 228 | 248 | 21 | 6.1E-46 | ||
| Phobius | 249 | 270 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0317300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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