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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0318500 |
| Transcript ID | LotjaGi6g1v0318500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat-containing protein family; TAIR: AT3G18670.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q9C7A2|ITN1_ARATH Ankyrin repeat-containing protein ITN1; TrEMBL-Plants: tr|K7MAD8|K7MAD8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0318500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63561289..63562945) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAAAGGAAATGCATAACTTGGTACAGAATCTAGTACAGTTGTTAGTAGCGACAGACGATTCATGGAAACATAGTTAT GTAGCAAAAGACAGGACAGTTTCAGCGAGTGGATCACATCATCTACCCAAGAAATCCAATTTTGAGATTCAAGAGAGACA AGAAAAGGGAGAAAATTCTGCAAGCAAACCTATTATTTATACCCCTTTGTTGATGGCTGCTTGCAATGGAATCATAGAGA TGGTTGAAGAAATAATTGATTTGAATCCTCAGTCAATCGACCATGTCAGTGAAGATGGGCAGAACCTCTTGAGCATGGTT GTTAAACACCGCCAGCTAAATATTTTCACATTGATGAAGAGATTGAAAATTGTGACACGTCTTGCTGGCCAAATAGACGA GGAAGGTAACACTGTGCTCCACTACACAGCAGAGTTTATAGGAGGAAACCAACCTGGTTATGCTCTACAATTGCAAGAGG AGTTGTGTTGGTTCGAAGTAAGTAACCTTTTAATAATCTCAATAAGAGAAATAGCATCTACAAATAATCCCTCCTCACTT CCCAATTCAATGCATCTTGCGTGCATTCAAAAATTTAAGTATATAATCAATCACAATAAAGGTAAAGATTTATGGAGGAG AAGGTTAAATAAAATTGAAACGGATTATGACCCTATAATGTTAATAATTCACATTTCTATCTATCTAATTTCAAATTCTA TACTTAACAGCGCATAGAACAAAGACTCCCTTATCATTACACCATTCACAAAAACAGGAGCAACCAAATTGCACGGGAAC TGTTTGAGGAGAAGCACAAAGAACTGCTGAAGGATGCTCGAGCATGGATAAAAGAGACAGCTCAGTCATGCTCTGCAGTA GCTGTCCTTGTAGCCACTGTTGTCTTTGCAGCAGCTTACACTCTCCCTGGAGGCACAGACGAGAATGGCATCCCTAGATT TCTTCATCATGCTATATTCCAAGTGTTCTTGGTCATGGATATTGTATCCCTTGTAAGTTCATTGGCTTCAGTGGTCATGT TCCTCTCAATCCTCATATCACCTTGTGAGATGTGGGATTTTCGGAAGTCTCTCCCTCGCAAACTAATGACAGGTTTTGCC TTGCTGTTCTTCTCCATGGCCACAACCATGCTATCATTCAGTGCAACAGTTCTGATCAACATCAAGTTAGAGAAGAACAA TTGGACTTCAATCGTGACATATTGTGCAGCATTCTTGCCCATCAGCATATTTGCTATGATGCAGTTCCCTTTATATGTTG GCATTAATCAATGTGTGAAGTGCATATTTGGGAGACTTAAGCAGGATAGTTAAATCCTCCGTATTATTTCCGCCTGGTGT CCTTTTTGCTGCTTTGGAGGCTTTTAGACTTTATGGATGTGGGGCAGTGTTTATTTGTTGTGGCTTCTCATCTTGCACTA TGTTCTTGGGTTTGGAGAGGGTTGTATCAGATAGTTTATTTTTTTCACCGGGTAGTGGTGTCAGTGTATATGCACTCTAT TCACTTGCACACACTGGATCACACACTCTAGGCAGTTGTTTGCTTTCTGTTAGTTGTTGTAAGCTGTTAAACAACTGTTC AGTTAGTTAGCTTCTATGATAACTGTATCACATTCAGTTATCCACCTATAAATGATG
CDS sequence (LotjaGi6g1v0318500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATAACTTGGTACAGAATCTAGTACAGTTGTTAGTAGCGACAGACGATTCATGGAAACATAGTTATGTAGCAAAAGA CAGGACAGTTTCAGCGAGTGGATCACATCATCTACCCAAGAAATCCAATTTTGAGATTCAAGAGAGACAAGAAAAGGGAG AAAATTCTGCAAGCAAACCTATTATTTATACCCCTTTGTTGATGGCTGCTTGCAATGGAATCATAGAGATGGTTGAAGAA ATAATTGATTTGAATCCTCAGTCAATCGACCATGTCAGTGAAGATGGGCAGAACCTCTTGAGCATGGTTGTTAAACACCG CCAGCTAAATATTTTCACATTGATGAAGAGATTGAAAATTGTGACACGTCTTGCTGGCCAAATAGACGAGGAAGGTAACA CTGTGCTCCACTACACAGCAGAGTTTATAGGAGGAAACCAACCTGGTTATGCTCTACAATTGCAAGAGGAGTTGTGTTGG TTCGAACGCATAGAACAAAGACTCCCTTATCATTACACCATTCACAAAAACAGGAGCAACCAAATTGCACGGGAACTGTT TGAGGAGAAGCACAAAGAACTGCTGAAGGATGCTCGAGCATGGATAAAAGAGACAGCTCAGTCATGCTCTGCAGTAGCTG TCCTTGTAGCCACTGTTGTCTTTGCAGCAGCTTACACTCTCCCTGGAGGCACAGACGAGAATGGCATCCCTAGATTTCTT CATCATGCTATATTCCAAGTGTTCTTGGTCATGGATATTGTATCCCTTGTAAGTTCATTGGCTTCAGTGGTCATGTTCCT CTCAATCCTCATATCACCTTGTGAGATGTGGGATTTTCGGAAGTCTCTCCCTCGCAAACTAATGACAGGTTTTGCCTTGC TGTTCTTCTCCATGGCCACAACCATGCTATCATTCAGTGCAACAGTTCTGATCAACATCAAGTTAGAGAAGAACAATTGG ACTTCAATCGTGACATATTGTGCAGCATTCTTGCCCATCAGCATATTTGCTATGATGCAGTTCCCTTTATATGTTGGCAT TAATCAATGTGTGAAGTGCATATTTGGGAGACTTAAGCAGGATAGTTAA
Protein sequence (LotjaGi6g1v0318500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHNLVQNLVQLLVATDDSWKHSYVAKDRTVSASGSHHLPKKSNFEIQERQEKGENSASKPIIYTPLLMAACNGIIEMVEE IIDLNPQSIDHVSEDGQNLLSMVVKHRQLNIFTLMKRLKIVTRLAGQIDEEGNTVLHYTAEFIGGNQPGYALQLQEELCW FERIEQRLPYHYTIHKNRSNQIARELFEEKHKELLKDARAWIKETAQSCSAVAVLVATVVFAAAYTLPGGTDENGIPRFL HHAIFQVFLVMDIVSLVSSLASVVMFLSILISPCEMWDFRKSLPRKLMTGFALLFFSMATTMLSFSATVLINIKLEKNNW TSIVTYCAAFLPISIFAMMQFPLYVGINQCVKCIFGRLKQDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 208 | 208 | - | – | |
| Gene3D | 3 | 144 | 142 | 6.9E-9 | ||
| MobiDBLite | 30 | 52 | 23 | - | – | |
| PANTHER | 39 | 358 | 320 | 1.2E-122 | – | |
| PANTHER | 39 | 358 | 320 | 1.2E-122 | – | |
| SUPERFAMILY | 63 | 140 | 78 | 2.31E-7 | ||
| Pfam | 200 | 310 | 111 | 3.9E-26 | ||
| TMHMM | 206 | 228 | 23 | - | – | |
| Phobius | 209 | 227 | 19 | - | – | |
| Phobius | 228 | 246 | 19 | - | – | |
| Phobius | 247 | 271 | 25 | - | – | |
| TMHMM | 248 | 270 | 23 | - | – | |
| Phobius | 272 | 290 | 19 | - | – | |
| Phobius | 291 | 311 | 21 | - | – | |
| TMHMM | 291 | 313 | 23 | - | – | |
| Phobius | 312 | 322 | 11 | - | – | |
| Phobius | 323 | 347 | 25 | - | – | |
| TMHMM | 323 | 345 | 23 | - | – | |
| Phobius | 348 | 362 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0318500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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