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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0318700 |
| Transcript ID | LotjaGi6g1v0318700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock transcription factor; TAIR: AT4G18880.1 heat shock transcription factor A4A; Swiss-Prot: sp|O49403|HFA4A_ARATH Heat stress transcription factor A-4a; TrEMBL-Plants: tr|I1M1P7|I1M1P7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0318700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63573549..63579436) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGAAAAACAACTTTAAGAAGAAAATTCAAAGTTGTATACCCCTTTACCTGGAAGCATCCAAACATTTGAGGACCAAA GAACCAAAGGGGTCATTATCCAACTTCCCATCGTTCTCTTCATCAAAACTGTCATTTAATTTATTTTAATGTCTTTCTAT TCATAAATTATTGGAATTAAATATCCAATTATTATTGCTTGATCATCAAGTTTATATTATTTTTATATCTATGAATAAAA AAATGGTTTTATATTGAGAAAAATCAATCCACTGATACTGTTGAAAAGCTGGTCAGAATCGTTTGAGCTTTTGGCAAATA TGGACAGAAATATGAACATTGGAGGAGAAGTTGACAACTTTTTATGTGGGTGTGTTGTGTGCTGGTTCCAATTTCACCTT TGTTGTGTTTGAACATTTGAATCTCTGCTATAGGTTGAACCTTTTAGGTTGTGAATTGTGATTCATCTTGTGGAGTGAAG GTAAGATTGTGAGCTTCCATTTTGCTTGCAGGAGGGTTTGTGAATTCAATTGGAAGAAGGGTATCATCTGTTTGAGAATT ATCAATTGGATTGATGGGGTGGAAATTCTAACTATAAAGATACAAGGGGAGGAGAAAAAGGAAGGATTTTTATTGTTTTC TTTAGGTTAGATTTGAGAGAAAGGAAAAGGGTTTTTCTGATTCAGCTGGGGAGGTGTATTTTGAGGGTGTTTGAGGATTC ACTTTGTGGTTAGATTTGTGAATTGGGTTGGAGGGTGTGTGATGGAGGAAGCTCATGGAAGTTCCAATTCCCTGCCTCCT TTCCTGACCAAGATTTATGAGATGGTAGATGATCCTTCATCTAATACTGTTGTTTCATGGAGTTCCACCAATAAGAGTTT CATTGTTTGGAATCCACCAGAATTTGCAAGGGATTTGTTGCCAAAATTCTTCAAGCACAACAACTTCTCAAGTTTTATTA GGCAGCTCAACACTTATGTAAGGAAATTTAATTTCTTCATGTTCATTAATGATTTGATAACTTGTTTTGCTTTTTGCTTC TTAGGTGTTTGTTTTTATTCCTGAATTAAGGTTTTTGATTGCTTGGACTGTGTCATGTTTTTCTGTTTCACCAGGGCTTT AGAAAGGTTGATCCAGAACAATGGGAATTTGCAAATGAGGATTTTGTGAGAGGTCAACCTCATCTTTTGAAGAATATCCA TAGGCGTAAACCAGTTCATAGCCATTCTTTGCAGAATGTCCAAGGGGCTGTTTCCCCACTAACGGAATCAGAACGACAGA GCTTGAAAGATCAGATAGAGAAGCTTAAACATGATAAAGAGCAACTTCTTCTGGAGTTACAGCGACACGAACAGGAGTGG AAAATGTACGAGATACAACTACATTGCTCAAAGGATCGTTTGGAGACGTTGGAAAAGAAGCATCAAACTATGCTCTCTTC TGTTTCTCAAGTGCTGCAGAAGCCTGGAATTGCCTTAAACCATTGGCAGCTGACAGAAAACATGGAGAGGAAAAGAAGGT TGCCGAGAAGTGGTCAGATTAGTGATGAAGCTAGCATTGAAGATCCCATGGAAGCTTCCCAAGTGTTATCTAAAGAAAAT GCTGAGAGTACTTCTGCTTTCACATTAAGCACGGAGCGATTGGATTCGCTTGAGTCATCCATGACTTTTTGGGAGAATAT TGTTCATGATGTTGGTGGCGTCTCCTCTTTTCATAGTCATTCCAATTTGGATTTTGATGCATCTATAAGCTGTGCCAATA GTCCAGCTATCTCTTGTATGCAACTAGATGTGGAAGTTCAACCCAAGTCACCCAGCATCGACATGAACTCTGAGCCAGTT GTAGCTGCTGTTCATGATCTCGTTGCATCAGAAGAACAACCTGCAGTAGCAGCCCCTGTGGCTACCGGTGTTAATGATGT ATTCTGGGAACAATTCTTGACAGAAAATCCTGGTGCCCAGGAAGCACAATCAGAAAGAAAGGAGTCTAATGGCAGAAACA ATGAGGGAAAACCAGGTGACTTTGGTAGATTTTGGTGGAACATTAGGAATGTAAATAACCTTCCAGAACAGATGGGGCAG TCTTAGTAGAATAGATAAAACTTAATGTTAATTGATTAATCTTCTAGCTTCTTATGCTCCATAGTTATATGTAATAAATG TAGGTTTGCATAGTTAGCTCTGCTATTTATGTATATTCCACATTTTTGGTTGAATGTTTGCTGAATCTTCTGTGGAATTT AGTTCATTTTACACTGCTTACTGGTCCCTTTAAGTTCTACTTAGCTAGGTGACAACACTTATGTTGAAGTATGTTTTTTT TTTCTCCACTTCAGTTGTTTCCCCTTATCCATTATGTTACTTCACCTACCATATAATAGAAGCTACCTTTGTTGCCATCC ATTGGTTTTTCTAATTTTGATCTAGAATCTCAGATCCCACAGAGGAAAATATTCTAGTATTGACAGTTAAAAATAATCTG TAGTGGTCTGTTTTAGGCACTAAACTTTCTGCTTTACTATGTGATGGCATGATCTGCATCTAATTTCTTGGTGAACTCCT AGTTTTACTGCTTGCTGCTGCATTTAGCAGATTGTCTGAATTTCAAGTTCATATTAGGTTTGTAGAATGGAGAACAGAAG AGTATGGTAAAAGAAAATTGATATTGCATTACAAACTTGTAAATTGAAGTCGCTAGTTAACATGAAAAATGGCAGCTTAA CACTTGTTTGGTTAAAAAAAATCTGTTTCGATTAATAAATATAAAAATAAAATTTTATTTTCAATTTTTATATATGTATC TTTGGTGATTGAAGGAAAAGGATAAGTTTTTTTGTTTGATTGCGTTTCAATTAAACTTTGAAGTGTTATGAGACATTGAC TTTTCATTCTTTGTGGCTCTTATTCAACTTGGTCTTGGTGTCAAACTGTCAATAAGAATCTGAAACCGTTCTCTTCTACA TATTACCAGTTTGTCACACCTCAAATGTTTGAGTTCCTTTCAAAATTCAAAGGCGTGTGCGGTGCGTATACAAGGTGGTG TCATGTATTACGGTTTTATTGGAGTACTGTGAGACTAGTATTCTCAAAGTCAGTCTTAACAACTTCTCGCTGTCAAGGGC TTGCATCAAAATACCCAAAGACTTCAATATGAAAATGATGTGCCAATTGGTGTGGGCAACCTGCAGTACAAGGATGACCG GCTGTTCCATTTCTATGTTTGGGACTTGGGAGAGCAGCTTTGGTGGGTGAGTAAGCGTGTGTTTATATTTCCGTTAAACT TGGATTCACGTTAAACACAATAGGTAAATTCTTGCTTCTTCGATCCATATTGATACATACTCTTTATCTCCTTAAACCTT ACCTTCACCTCCGTCAACCTCGTTCACAGGGGCGGAGGGAGGGGAGACACATGAGTGCCATGGTCCCCAAGCATCTTAAT CTTTTTTCTTTACATATGCATGAGAGTTGTGAAAATAGGCTATTATCTTTTATCTTAATATTATTTCATTTTGACCCCCT TTTTTATCTTCGCCCCTCTAATCTCAAATTTCTGCATTCTCCCCTACATGTCCACTTTCCTTTTGCCTGAAACAAACATG GGCGGATGCACTTTATGCTTCGTTTATTACGAGAGTTACAAGAGAGGGATAGGAAAGAAAAAGAACCTGGTAGGGCCATC ACTTTTTATGGTCGTTTTTTTTTCTTCTTATTTGAAGGTGTCTTATAACGCGTGTAAACTAAAAACTATACAAACAGTCA GTAATTGGTTGATCCAACAAATTACTATTAAATTGTGGATCTGGCTTTTACATAAAGTTCTTACAGTGTATCAAGGAGCT GTTTTTTTTATGATCACGGGACCCCATCAATCTCCTAATTTCCTCACATTCTAGTTGAATGTGTAATATTTTTATTCTTG CCTTCTAGGTTGTGTGTCATTTATTTATCCTAGCCTCAATCTTCAATATGTGAGGTGACACTTACAACTATTATTATTAG CAGAGCGATAACTTATGAACTGTGGACAAAAATGGTGGTTACAATATTAATATAAAGTGCTTCTTTTGTTTTTTCTGAAG CTGCAGGACTGGGGGATGGGGAGGATGGAAACCTTTTGTACCTGTTTAATGTCTCATTTATTGTCCGAGAAATATAATTG TGTCATGTTAACTAAAGTCGCACATGCTTATAAAAAAAAAACTAAGTCGCACATGTGAGATTATAATTATCATATTTATA TTTTTTTTAATTAACATGCATAATTCAATGTGTGGGACACAGAAAGGGACAACAAATGAGAATAGAAGATTTCGATGTCT TCCTCAAACATCCAAACATTATGTGAATAGGCAACACGGTATTAACTCTTTTTAGCTAATTTAGCTTCCTTAATTATGTC ATTCTAATCATCAACAACTAAGTATCTAAGTTTATATGTATGCACAAAGAACTCTTATATTAAGTTACTTAGAAGCATAA GTTACTACACATCCTGTTACAACTAACCTCGAAATTGTGAAAGATGTAGATAGAATATTGAGTTTCTAGTAAAATTAAAT CATGACAAGAACAACAAATATATGCAGAATAACTACTTACATTTCTGGTTAAGCCAGTCAACTAGACAGATTTTTATTCA TAGCAACACCATTGCATTTCTGATTTAATTCCCAAACCATATTGGCTCATATCAAACCATACTTGCCTGAACACTTTGAT GATGAGATCATGATACTCATCAGCATTCAAAGTCAGATAACATGCCAAAAGCTCTTCCATTTCTTGTGGCTGACTAATCT GCTTCTCCATGATCATCTCAATCATTGAATCTCTGAAATCCTGCTTTGGATCCAATGAACTTTTAATCACTGCAAAGCTA TCTAACTCTGGTGTTTCCTCCACAATTTCTTTTCTTTCTTTCTTCACCTTCAGTTTTGCTTTCCTCATGTCTTCTATAGC CTTTATTTTGCAACTTTCAACCTTGGAAATGGAAGCCATCCTTGGAGAGTTAATTCTGACTTTGGAGCTGTGCTTTGGTT TCCTCCTCTGAACTTCTCTGCTTACATGAAGTGGTTGCGTCTGTTTCTCAATCTTTACCTTCAAATTCTGCTTCTCAGAA CTCAGTCTCTTCCGAGTTGTGCTGTCATTTTTCTCGAAATTCTGTGTACTAAACACGCGATCTTCTACGATATTTCTAAA ATTCTTGGAATCAGAAGAGGCAAAAGAATGTGTTCGTGGTGTGCAAATTGTTCTAGGTGATTCAAATTGCAACACATCTT TTTCCACATCTTTACCTGAAGCAAATTCAACTTCCTTGATTTCTCTTTCAAGTTTCAAGAGCTGCGCTTGCAAAACTTGT TGTGCTTTCCTCTCGAATCTCCTCCTTAAGTACTCATATTCCAATTCTCGATTGTACTCATCCATCATCTCATTTGAAAC CTTTTGATCATTCAGCAACTTTCTCTGTTCTTCTCTCTTCTCCTTTAACTGGGGGGCACCTTCTCTTCTTCCATTTCTCA TAGCATTGCTTCTACCACTGTGGAAACTTGAGGATGCAATGACATTGTCATCAAAATCTTTACTTCTCTTATCTGTACTA TCTTCTTCACATGATTGTTTCCTGAAAACACCATCATATCCAGCATAAAATCTATCTCCATTCCTACAAGAATAATGTGA TGAAGATGAACTACCAGCAGAAGATGTAGAATTCCGATTTTCCTTGTGCTTGATTTTTGCAGGACTTGGTTCTGAATTGA TTCTCATCTGCATGAACTTTGACAGCCAAGAAAAATGAGATGCCTTTTGAGTTTTAGAGATGAAAGAAGGCTCAGAAGAA GAAGATGAAGAATTTTTTCTTCCACCCCACTTCATATTTTGGTGTTGG
CDS sequence (LotjaGi6g1v0318700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAAGCTCATGGAAGTTCCAATTCCCTGCCTCCTTTCCTGACCAAGATTTATGAGATGGTAGATGATCCTTCATC TAATACTGTTGTTTCATGGAGTTCCACCAATAAGAGTTTCATTGTTTGGAATCCACCAGAATTTGCAAGGGATTTGTTGC CAAAATTCTTCAAGCACAACAACTTCTCAAGTTTTATTAGGCAGCTCAACACTTATGGCTTTAGAAAGGTTGATCCAGAA CAATGGGAATTTGCAAATGAGGATTTTGTGAGAGGTCAACCTCATCTTTTGAAGAATATCCATAGGCGTAAACCAGTTCA TAGCCATTCTTTGCAGAATGTCCAAGGGGCTGTTTCCCCACTAACGGAATCAGAACGACAGAGCTTGAAAGATCAGATAG AGAAGCTTAAACATGATAAAGAGCAACTTCTTCTGGAGTTACAGCGACACGAACAGGAGTGGAAAATGTACGAGATACAA CTACATTGCTCAAAGGATCGTTTGGAGACGTTGGAAAAGAAGCATCAAACTATGCTCTCTTCTGTTTCTCAAGTGCTGCA GAAGCCTGGAATTGCCTTAAACCATTGGCAGCTGACAGAAAACATGGAGAGGAAAAGAAGGTTGCCGAGAAGTGGTCAGA TTAGTGATGAAGCTAGCATTGAAGATCCCATGGAAGCTTCCCAAGTGTTATCTAAAGAAAATGCTGAGAGTACTTCTGCT TTCACATTAAGCACGGAGCGATTGGATTCGCTTGAGTCATCCATGACTTTTTGGGAGAATATTGTTCATGATGTTGGTGG CGTCTCCTCTTTTCATAGTCATTCCAATTTGGATTTTGATGCATCTATAAGCTGTGCCAATAGTCCAGCTATCTCTTGTA TGCAACTAGATGTGGAAGTTCAACCCAAGTCACCCAGCATCGACATGAACTCTGAGCCAGTTGTAGCTGCTGTTCATGAT CTCGTTGCATCAGAAGAACAACCTGCAGTAGCAGCCCCTGTGGCTACCGGTGTTAATGATGTATTCTGGGAACAATTCTT GACAGAAAATCCTGGTGCCCAGGAAGCACAATCAGAAAGAAAGGAGTCTAATGGCAGAAACAATGAGGGAAAACCAGGTG ACTTTGGTAGATTTTGGTGGAACATTAGGAATGTAAATAACCTTCCAGAACAGATGGGGCAGTCTTAG
Protein sequence (LotjaGi6g1v0318700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEAHGSSNSLPPFLTKIYEMVDDPSSNTVVSWSSTNKSFIVWNPPEFARDLLPKFFKHNNFSSFIRQLNTYGFRKVDPE QWEFANEDFVRGQPHLLKNIHRRKPVHSHSLQNVQGAVSPLTESERQSLKDQIEKLKHDKEQLLLELQRHEQEWKMYEIQ LHCSKDRLETLEKKHQTMLSSVSQVLQKPGIALNHWQLTENMERKRRLPRSGQISDEASIEDPMEASQVLSKENAESTSA FTLSTERLDSLESSMTFWENIVHDVGGVSSFHSHSNLDFDASISCANSPAISCMQLDVEVQPKSPSIDMNSEPVVAAVHD LVASEEQPAVAAPVATGVNDVFWEQFLTENPGAQEAQSERKESNGRNNEGKPGDFGRFWWNIRNVNNLPEQMGQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 394 | 393 | 3.0E-138 | – | |
| PANTHER | 2 | 394 | 393 | 3.0E-138 | ||
| Gene3D | 6 | 104 | 99 | 3.1E-39 | ||
| SUPERFAMILY | 9 | 103 | 95 | 7.07E-36 | ||
| SMART | 10 | 103 | 94 | 1.1E-61 | ||
| Pfam | 14 | 103 | 90 | 1.9E-30 | ||
| PRINTS | 14 | 37 | 24 | 3.2E-19 | ||
| PRINTS | 52 | 64 | 13 | 3.2E-19 | ||
| ProSitePatterns | 53 | 77 | 25 | - | ||
| PRINTS | 65 | 77 | 13 | 3.2E-19 | ||
| Coils | 126 | 160 | 35 | - | – | |
| MobiDBLite | 350 | 375 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi6g1v0318700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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