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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0320600 |
| Transcript ID | LotjaGi6g1v0320600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G18750.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein DOT4, chloroplastic; TrEMBL-Plants: tr|A0A0R0G7R8|A0A0R0G7R8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0320600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63716494..63720638) extracted from Lotus japonicus Gifu genome v1.2.
ACCACATATTCTAATTGAGTCTGTTAGCATTCTCTTAGATCAGCTAGAGAGCGAGTGATAGTGTATTAGTTTAAGCCCTT TAAGAAAAATATATATTAACTGGGTCACAACTCACAAAGTAACTGGAAACCACCTGCTTGATAAGTATAAATTGTGGATT AATTTTGATCTAGGACCTAAGTATTTTAACAAGTTCCTCCTTCTTTAGTTTAGAATAACCTTTCACTCTTCTTGACTTAG CTAGTGCTTTCAACTCACCAAGTTTCAGCTTCTCAAGTCTCTTTGATTGTACCTGTTTACCCCCCTCAATAGTTGGCACT GCTTCCTTTGTTAGCTCAATAACCTCTCCTCTTGGGATTGATAGATATGGAATTGGGGATTTCTTTACAAAATTTGATGG CAGTCGACTCAACTTAAACTCCATTTCAGGTGCCTCTTCCTCTTTCCTGGATCCTTTTGCCCTGCCTGAAATTTTGCCTG AATCAGATGAGAAATAGATAGAAACACAATGGAAAAAACAATCTAAAACTGTAACTTACCTTTCACTTGCTTTTTTGGTT TATCAAAAATATCTAGAAGTGATTCAGTGGAGTTAGGCTTATCCTTGTAGCTCCTCTTCCTGGTTTCTAGTGACCCTCTC TTTGATATTGAAGACTGTATCCGTCTGAACAGAGCAATTATCTCTTCCTGGTCAGAAGACTTTGATTTTTTACCATCAAA TAATTGAGGTCTCTTCTTTTCAGTTCTCCCACTGGTTTGAACAACTCTGTCTCCATCAGCTCTTATTCTTGAATCAGAAA ATGGAGAGAAAACCTTGTGGGACACAAAGGGTGAAGGTTGAATTGCAATCTCTGCCAATTCAACAAAGAATCATGTCTCC ACCTATAAAAAGGAAATAAGAAAGGAAGATAGTACCTTTCATATGTAGACAAGATTTTCCTAAATAGCACTGCTTGCTGA AAGAGAAACACATGGAAAAACAAAGAAGATTATGTGAATGATATGCAACCGCATTCATCTTTCCCAGAAACAAATTCCAG ATTCTGAAATTCACAAATGAATTAGAATCACAAACCACCTCCCCATTTATTTTACAATTATTTGCTATTATTTCATTTCA CATGTTACAAAATAGCTAGTCCACACAAACATATGTTGCCTTATAAGAACTAATCGGTTAAAAGATTATGTGTTCGATTC TCGCTGTGCCGATATAAAATTGTGTAGGTGGGTGAGCTTGTTTGATTTTCAGTTGGGTGAATGTGAAAGCACATTCACTC AACCCAATAAGTGCATTCCGTCGGCTGAATGTGTATTGGAAATCGTGATTTCGAATTTCAATGCTTCAAACGGACTTCTT AATTGAAAACCAAACAGATACTAGTTTGTTCATTGTTTCTCACTCTGCCAATATGAGACTGTATAGGTGGTGACCGGAGC CGAACTCACCAATAAAAAATAGTCGGCCCAATATTATTGTGACACGTGTCACACACACACGCTGCTATAAAACATGTTCC CTCACTCTTTCCTCACACTCGCAGAAACACTGATGACATGAACAATGTTGTTGCCAATGGCGAAAAGCATAACACACTTC AGCACTTATCAAACTTGTAACAGCAGCTATAAGAACAAACCAAACTATGGCAAATCGAATAGCGACATCTTCTTCGGAAA ATCTTCAACAACAAGATTGTTGGCTTTGAATTTGGATGTTCCTCGCAGCACAAGTACTACTACTATCGGTTGTGTCTCTG CCTTGTTGGATGAAAATGCAGAAATTCGAAAACTCTACGAGATGGGTGATCTCGGAAATGCTGTAGAATTGCTCAGGAGG GCACGAAAATGTGAGATTGATTTGAATACTTACTGTTCAATCTTGCAGCTATGTGCTGAGCACAAGTGTTTGCAAGAGGG TAAGATGGTTCATTCAATTGTCTCCTCCAATGGCATGAGGGTTGAAGGGATTTTGGGTGCTAAACTAGTGTTCATGTATG TGAGTTGTGGAGAATTAAGACAAGGGAGACTGATATTTGATCAGATTCCTAATGATAAGGTTTTTCTGTGGAATCTTATG ATGTCTGAATATGCAAAGGTTGGAGATTATAGTGAAAGTATACATCTGTTTAGGAAAATGAAGAGCTTTGGAGTCACAGG AAATTCTCATACATTTCCATGTATCTTGAAGTGTTTTGCTGTTTTAGGAAGGGTAGGAGAGTGTAAAATGATTCATGGGA GTATCTATAAACTTGGTTTGGGTTCTCATAACACTGTTGCTAATTCAATGATTGCTGCATACTTCAGGTGTGGTGAAGTT GACAGTGCACACAAGGTGTTTGATGAATTGGCTGACCGAGATGTTGTTTCCTGGAATTCTATGATAAGTGGGTCGGTGAT GAATGGTTTTTCTCATGATGGGCTAGAGTTCTTCATTCAGATGCTTATTTTGAGAGTTGGTGTTGATTTGGCTACATTGG TTAATGCTCTTGTGGCTTGTGCAAGTATTGGAAGTCTTTCATTGGGTAAAGCACTTCATGGTATTGGAGTCAAAGCATCT TTCAGTAGTGAGGTTATGTTTAGCAATACCTTAATAGACATGTATTCAAAATGTGGTGATTTAAATGGTGGAATTCGAGT TTTTGAGAAGATTGTTCAAAGAAGTCTTGTTTCTTGGACAATCATTATTGCTTGTTATGTACGAGAAGGTTTATATGATG ATGCAATCAGGTTATTCTATGAAATGGAAAGCAAAGGGATTAGCCCAGATGTTTATTCCGTGACTGGCATCCTTCATGCT TGTGGTTGTAGCAACTCATTGGACAAAGGAAGAGATGTACACAATTACCTTAGAAAGATCAACATGGACTTGAGCTTGCT TGTGTGTAATGCTCTCATGGATATGTATGCAAAATGTGGAAGCACGGAAGAAGCTCATTTAGTTTTCTCTCAGATTCCAG TTAAGGACCTTGTCTCGTGGAACACCATGATTGGAGGTTATTCGAAAAACTCTCTCCCCAATGATGCTCTTAAACTTTTT GCTGAGATGCAAAAAGAATCAAGACCTGATGACATATCATTGGTTTGCATTCTTCCAACTTGTGGAAGCCTTGCTGCTTT AAAGATAGGCAGAGAGATACATGGGCACATATTGAGAAATGGGTACTCTTCAGATTTGCATGTAGCCAATGCACTTGTTG ATATGTATGCAAAATGCGGGTCACTAGTTCAAGCACAGTTGCTCTTTGACATGATTCCTGAGAAGGATCTCATCTCTTGG ACTACTATGATCGCTGGATATGGGATGCATGGGTTTGGAAGTAAAGCAATTGCCGCTTTTCAGAAGATGAGGATTGCAGG TATTAAGCCTAATGAGATCACCTTCACTTCGATACTTCATGCTTGCAGTCAGTCTGGATTACTGAAGGAGGGGTTGGAAT TCTTTAATTCCATGGAAAGTAAATGCAACATTAAGCCCAAGTTAGAACACTATGCATGCATGGTTGATCTCCTAGCCCGT ACTGGAAATCTATCCAAAGCCTACAAGTTCATTGAGGCAATGCCTGTTAAGCCAGATGCTATAATTTGGGGTTCCTTGCT TCGTGGGTGTAGGATCCATCATGATGTTAAGTTAGCAGAAAAAGTGGCAGAGCATGTTTTTGAGCTAGAGCCAGAGAACA CTGAATATTATGTTCTTTTGGCAGACATCTATGCAGAAGCTGAAAAAAGGGAGGTAGTGAAGAAGTCACAAGAGAAGATT GGTAAGAAGGGACTGAAAAAGATGGAAAATGGTGCTTACATCACAAATGGTGACAAGAGAGACAAGAAGAGAAAAGAGAG GAGCGATGGACATCATAGATAATGTGATGTAACACAAAAAGAGAGATGGAAACAGAAAAATTGAAAAATGTGTGGTGGAT TTATTGTAGGGTGTCTAAAAATCAAAGTTGATAAAGATACCAACTACAGTTAATTTGCTCCCCATTTCTTTGTACTAAAT TCGAATCTACAGCTAACATGATTGAATTGGACATTGACTCACTAATCAAAATATTATCAGCTCACTTCTTTCTTACGAAA TTTTTTTCATCAACATGTAGTATGTCTGAACCAGCTTCTCTTTTATTAGAATCAATTTTAAAACC
CDS sequence (LotjaGi6g1v0320600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTTGCCAATGGCGAAAAGCATAACACACTTCAGCACTTATCAAACTTGTAACAGCAGCTATAAGAACAAACCAAA CTATGGCAAATCGAATAGCGACATCTTCTTCGGAAAATCTTCAACAACAAGATTGTTGGCTTTGAATTTGGATGTTCCTC GCAGCACAAGTACTACTACTATCGGTTGTGTCTCTGCCTTGTTGGATGAAAATGCAGAAATTCGAAAACTCTACGAGATG GGTGATCTCGGAAATGCTGTAGAATTGCTCAGGAGGGCACGAAAATGTGAGATTGATTTGAATACTTACTGTTCAATCTT GCAGCTATGTGCTGAGCACAAGTGTTTGCAAGAGGGTAAGATGGTTCATTCAATTGTCTCCTCCAATGGCATGAGGGTTG AAGGGATTTTGGGTGCTAAACTAGTGTTCATGTATGTGAGTTGTGGAGAATTAAGACAAGGGAGACTGATATTTGATCAG ATTCCTAATGATAAGGTTTTTCTGTGGAATCTTATGATGTCTGAATATGCAAAGGTTGGAGATTATAGTGAAAGTATACA TCTGTTTAGGAAAATGAAGAGCTTTGGAGTCACAGGAAATTCTCATACATTTCCATGTATCTTGAAGTGTTTTGCTGTTT TAGGAAGGGTAGGAGAGTGTAAAATGATTCATGGGAGTATCTATAAACTTGGTTTGGGTTCTCATAACACTGTTGCTAAT TCAATGATTGCTGCATACTTCAGGTGTGGTGAAGTTGACAGTGCACACAAGGTGTTTGATGAATTGGCTGACCGAGATGT TGTTTCCTGGAATTCTATGATAAGTGGGTCGGTGATGAATGGTTTTTCTCATGATGGGCTAGAGTTCTTCATTCAGATGC TTATTTTGAGAGTTGGTGTTGATTTGGCTACATTGGTTAATGCTCTTGTGGCTTGTGCAAGTATTGGAAGTCTTTCATTG GGTAAAGCACTTCATGGTATTGGAGTCAAAGCATCTTTCAGTAGTGAGGTTATGTTTAGCAATACCTTAATAGACATGTA TTCAAAATGTGGTGATTTAAATGGTGGAATTCGAGTTTTTGAGAAGATTGTTCAAAGAAGTCTTGTTTCTTGGACAATCA TTATTGCTTGTTATGTACGAGAAGGTTTATATGATGATGCAATCAGGTTATTCTATGAAATGGAAAGCAAAGGGATTAGC CCAGATGTTTATTCCGTGACTGGCATCCTTCATGCTTGTGGTTGTAGCAACTCATTGGACAAAGGAAGAGATGTACACAA TTACCTTAGAAAGATCAACATGGACTTGAGCTTGCTTGTGTGTAATGCTCTCATGGATATGTATGCAAAATGTGGAAGCA CGGAAGAAGCTCATTTAGTTTTCTCTCAGATTCCAGTTAAGGACCTTGTCTCGTGGAACACCATGATTGGAGGTTATTCG AAAAACTCTCTCCCCAATGATGCTCTTAAACTTTTTGCTGAGATGCAAAAAGAATCAAGACCTGATGACATATCATTGGT TTGCATTCTTCCAACTTGTGGAAGCCTTGCTGCTTTAAAGATAGGCAGAGAGATACATGGGCACATATTGAGAAATGGGT ACTCTTCAGATTTGCATGTAGCCAATGCACTTGTTGATATGTATGCAAAATGCGGGTCACTAGTTCAAGCACAGTTGCTC TTTGACATGATTCCTGAGAAGGATCTCATCTCTTGGACTACTATGATCGCTGGATATGGGATGCATGGGTTTGGAAGTAA AGCAATTGCCGCTTTTCAGAAGATGAGGATTGCAGGTATTAAGCCTAATGAGATCACCTTCACTTCGATACTTCATGCTT GCAGTCAGTCTGGATTACTGAAGGAGGGGTTGGAATTCTTTAATTCCATGGAAAGTAAATGCAACATTAAGCCCAAGTTA GAACACTATGCATGCATGGTTGATCTCCTAGCCCGTACTGGAAATCTATCCAAAGCCTACAAGTTCATTGAGGCAATGCC TGTTAAGCCAGATGCTATAATTTGGGGTTCCTTGCTTCGTGGGTGTAGGATCCATCATGATGTTAAGTTAGCAGAAAAAG TGGCAGAGCATGTTTTTGAGCTAGAGCCAGAGAACACTGAATATTATGTTCTTTTGGCAGACATCTATGCAGAAGCTGAA AAAAGGGAGGTAGTGAAGAAGTCACAAGAGAAGATTGGTAAGAAGGGACTGAAAAAGATGGAAAATGGTGCTTACATCAC AAATGGTGACAAGAGAGACAAGAAGAGAAAAGAGAGGAGCGATGGACATCATAGATAA
Protein sequence (LotjaGi6g1v0320600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLPMAKSITHFSTYQTCNSSYKNKPNYGKSNSDIFFGKSSTTRLLALNLDVPRSTSTTTIGCVSALLDENAEIRKLYEM GDLGNAVELLRRARKCEIDLNTYCSILQLCAEHKCLQEGKMVHSIVSSNGMRVEGILGAKLVFMYVSCGELRQGRLIFDQ IPNDKVFLWNLMMSEYAKVGDYSESIHLFRKMKSFGVTGNSHTFPCILKCFAVLGRVGECKMIHGSIYKLGLGSHNTVAN SMIAAYFRCGEVDSAHKVFDELADRDVVSWNSMISGSVMNGFSHDGLEFFIQMLILRVGVDLATLVNALVACASIGSLSL GKALHGIGVKASFSSEVMFSNTLIDMYSKCGDLNGGIRVFEKIVQRSLVSWTIIIACYVREGLYDDAIRLFYEMESKGIS PDVYSVTGILHACGCSNSLDKGRDVHNYLRKINMDLSLLVCNALMDMYAKCGSTEEAHLVFSQIPVKDLVSWNTMIGGYS KNSLPNDALKLFAEMQKESRPDDISLVCILPTCGSLAALKIGREIHGHILRNGYSSDLHVANALVDMYAKCGSLVQAQLL FDMIPEKDLISWTTMIAGYGMHGFGSKAIAAFQKMRIAGIKPNEITFTSILHACSQSGLLKEGLEFFNSMESKCNIKPKL EHYACMVDLLARTGNLSKAYKFIEAMPVKPDAIIWGSLLRGCRIHHDVKLAEKVAEHVFELEPENTEYYVLLADIYAEAE KREVVKKSQEKIGKKGLKKMENGAYITNGDKRDKKRKERSDGHHR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 64 | 222 | 159 | 8.5E-142 | – | |
| Gene3D | 70 | 166 | 97 | 6.7E-7 | ||
| ProSiteProfiles | 99 | 133 | 35 | 7.004 | ||
| ProSiteProfiles | 165 | 199 | 35 | 10.38 | ||
| Pfam | 166 | 212 | 47 | 1.3E-7 | ||
| Gene3D | 167 | 329 | 163 | 1.7E-24 | ||
| TIGRFAM | 168 | 199 | 32 | 4.0E-5 | ||
| ProSiteProfiles | 200 | 234 | 35 | 6.39 | ||
| PANTHER | 203 | 322 | 120 | 8.5E-142 | – | |
| ProSiteProfiles | 235 | 269 | 35 | 9.131 | ||
| TIGRFAM | 240 | 268 | 29 | 2.7E-4 | ||
| Pfam | 240 | 265 | 26 | 3.9E-4 | ||
| Pfam | 268 | 294 | 27 | 0.0012 | ||
| PANTHER | 304 | 429 | 126 | 8.5E-142 | – | |
| Gene3D | 330 | 466 | 137 | 4.8E-27 | ||
| ProSiteProfiles | 336 | 366 | 31 | 7.454 | ||
| Pfam | 341 | 366 | 26 | 0.0091 | ||
| ProSiteProfiles | 367 | 401 | 35 | 12.715 | ||
| Pfam | 368 | 413 | 46 | 1.1E-11 | ||
| TIGRFAM | 369 | 403 | 35 | 2.1E-10 | ||
| ProSiteProfiles | 402 | 436 | 35 | 6.281 | ||
| PANTHER | 415 | 514 | 100 | 8.5E-142 | – | |
| ProSiteProfiles | 437 | 467 | 31 | 7.64 | ||
| TIGRFAM | 440 | 464 | 25 | 0.0025 | ||
| Pfam | 441 | 464 | 24 | 0.016 | ||
| Gene3D | 467 | 569 | 103 | 8.9E-17 | ||
| Pfam | 467 | 506 | 40 | 9.8E-9 | ||
| ProSiteProfiles | 468 | 502 | 35 | 10.841 | ||
| TIGRFAM | 470 | 498 | 29 | 7.0E-7 | ||
| PANTHER | 519 | 727 | 209 | 8.5E-142 | – | |
| ProSiteProfiles | 537 | 567 | 31 | 7.267 | ||
| Pfam | 567 | 615 | 49 | 1.2E-9 | ||
| ProSiteProfiles | 568 | 602 | 35 | 10.611 | ||
| TIGRFAM | 570 | 604 | 35 | 1.3E-6 | ||
| Gene3D | 586 | 763 | 178 | 1.9E-28 | ||
| ProSiteProfiles | 603 | 633 | 31 | 9.591 | ||
| TIGRFAM | 605 | 638 | 34 | 9.6E-5 | ||
| ProSiteProfiles | 639 | 669 | 31 | 6.785 | ||
| Pfam | 643 | 667 | 25 | 1.2 | ||
| ProSiteProfiles | 671 | 705 | 35 | 5.492 | ||
| MobiDBLite | 743 | 765 | 23 | - | – | |
| MobiDBLite | 745 | 765 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0320600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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