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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0324900 |
| Transcript ID | LotjaGi6g1v0324900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | THO complex subunit 7 like; TAIR: AT5G16790.1 Tho complex subunit 7/Mft1p; Swiss-Prot: sp|Q8LDS5|THO7A_ARATH THO complex subunit 7A; TrEMBL-Plants: tr|A0A0L9VF74|A0A0L9VF74_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0324900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64035310..64038819) extracted from Lotus japonicus Gifu genome v1.2.
TTATTATTAAAAGTTCATTTATACAGGAATATAGAAATAAACGCATTCGGCCCGCTCCCTCCTCCGCAGTGATACCTTTT CCATCGGAGGCGCAACCGCGAAGATGCTCGGAAAGACAAGGAAGGTTTCGGCGCGCGGCGAAGCAGTGGCGGCCAACTAC GCCTTCGGCCCCGCCGAAGACGACGCAATCATCAAGCACAGGCTCCTCACCCGAACAACAACCACCAGAGGCGAACCACC ACTGAAGAAGCTTCAGAAGAAGTTCACCTCCTTCGTCTCCGAGATCGACAAGGACGACGACGACGAAGAAAACTACGCCG ACTGCGACAAGCTCGCCAGAGCCTTCTTGCAGGAGCTAACCGCTTTCGAGATCCCGCTTCTCAAGAGCAAGGCGGTTGTG GATGCCAATGTGAGGGAGCAGGAGAATTTCAACGAGTTGAATGATGAGATGAATCGCCAGATCTTGCAGGCGCAGGCGGA TATTGAGGTGTTGAAGAAGCAATTGGAAGAGAGTAAGGTCGAGAGGCGGCATAAGGAGGAGTGCGAGGCTATTAGGAAGT TGATTGCTCTGCAGCCGCCGAGGGCGAAGACGATGAAGGTTAACACGGAGCTGGAGAAAGAGATTGCAGCATTGGAGGCA GAGAATACAGCTGGTTCTAGATTGTTGGAGCTGAGGAAGAAGCAGTTTGCACTTTTGTTGCATGTGGTATGTGGTGTTAT GCTTTTATGCTATGTCTTTTGTGGTTACTGTGTTTGTTTTTGCTTCTTTCAATTATGCAATGATGGAATTTATACTGTGC TGATGTTTATACTTGGTCATGTTAAACTAGCTCTAAAGAATGCAACCTTAGATAAATAATGCAAATGCAATGAGAAGGGT TATTAGTGATCTTAGCTCTAAAGATGTTTATACTTTTGTTGGTCTGGAAGACTGGAACAGAGAACTTGTTTTAATTTGTA AATTTATTGCATAAATTGGCTATGCAGTTTATATTAGGCATATCAAGTGTGTTACGATTAGTTTGCTCGTTAATCGTTAG TCTGATAGCTAACTCTGTTAGTTAGTTTCGTTATATAGTTAGTTAGTTTGGTTCCATTTCTACTGCATAAATATACTTGT ATCTACTCATTTCATATCAGTTCAATAATATGGTTCCTCCTTGAATTGAATTGATTCTCCTTTTTTCTCTCCAAAGAGTT CTTCTCCTTTACTTCTCGTAACTCCATCCAAAATTACTGAGATGGTATTAGAGCTTCACCCACAGAGCCCATCACTTTTG CCTCATTTGCTTCAAGCTTCGATGGTTGTTGATGTTGGTTTCATGCACCAAGATATATTTTCAGTGATTTTTTGGGTGTC TATGTTCATTCCATCCTACTCCATCGTCTTATCTGTAGAAGAGGGAAAAAATGGAGAAGAAATCATGAGGCTGAAATGCA AGCTTGAGCAAGCCTTGACCAAAGACCAAGGAGATTTCAAGAAGGCTTCGCTCAATCCTTGAAAACCTCATGAAGATTCA TCTTAGTTGTCAGGCCTGAGCTGCTACCATGACCTGAATTTGACATTGCCTCTGTCAAAATCCCATTGCTCAAATGCTCT GAAGTCTAAAGTCACCGCTGCAAGGACCGTCATCACTCTTTATTTCACACACACAGGTGCAAGAGTGTGCCGTCGCTCTT GCTCTTCTCTGCTCAGGGTTCTCAGGTCAGTTGGAACCATTGTCATCCTGCCAATGCATCTTGTAGAGTCCACTTCGGAG ACACTGTGGTAGTGAGCCCAAGAAAGAAGGTGCGCGCTGCAATCTTTATCATCTTCATCATGGAGCCAAGGTTTTCAAAA CCTCCACGGTCAACAACTGTGTCGACAGCATGTTGGCTAACGGGGCCTTCATCAGGGAGCCACTAACCAAGTCCCTTATC AGCATATGTGCCTGAGCGCCATGGTTGAGGTCCAGAGTTGAGGGGGGTCTGATATCTTTATCTGAGCCATTCACTTAGTG TCTTTGCTATGCTCCCAATCTGACGTCTCAACTTGTTTTAGCTGTGTTAATGGTTACATGGAGCTATTCCCATATTTTTT CCCTCACTCTCATCATAACTGGTAGACTTCAGATGTTATAGATCATGTATTTAGATCATTTATTTCTTGATTTAATGGAT TTCAGATGTTGTACGACCATTGTATGACCATCACCATCGTTTGAGGTTGTATAATATAAATATAGAATGTCTTAGATTTG TTTGTCTGAAACTGTTGTTTGAGGTTGCATCTTATTGGCTAAGTTCGTCGGTCAATTGAATACATCTATTGGCCATCTTG TTAGTTTTTTTGGCCTTCACAGGATTTCTTTTTTCCAGCTGGTTTTTGTTTGGTACCAATCACCACCACCAGATTGTTGT GGGGTATTAGGAATATCAAGGGTTTTGTGGTTAGTTTGTTGATTATTAGTTAGTCTCTTAGTTTCAATTCAGTTGTTATA ATTAGTTTGCAAGGTTCCATTGCTACTGTATGAATATACTTTTTTCTCCTCATTTCATATCAGTTGAAGACTTATATCTA TGTTAGGCATACCTTTCTCATGAAAACTGTTGGTTTTGTTTTAAAATTAATTTGAATCACGTTTCGATGAGGCACTTTGA TTCAAGTATTTCACAATAAGGAGTTGTGTATTTTCTCTTTATCAATTATTTCCCATGTTACATGAACTTCTTAACTGGAA ACACCGTGATTTCAAAATCTGGACAAAGCGACTTCCCTTATGTTAATATTTTTTGTCTATGTAAGCTATTGATATTAATG TTTATTTTGCTTTTGGTCTTCCTACAGGTGGATGAGTTGCAAAACACGATAGAGGAGGACCAAAAGAGTCTTGTTGAGGA AATGAGAATAGCAACTGAGGAGCTTAAGAATGGGATGGAGGACGCAAGTGGGGGGTCGGAATCAATGGCAATTGACCAGT AACTAGATTGAATATTTACTGTTGTAACATCTCTTACACTAAAATGGTGGTTTGTTTTTCTACAATGATTAGGAATCAAA TGTAAATGAAATATCAGTATTATTGTGCTAGTGCTGAGACCTTAGTAATACTTAAATGCATTTTGATTGGAATTTTCTTT CAAAATTTGTCTGAGAATCAATATTGTTGAGTTTAAGTTGCAATGCAACATCTTCTAAAGTGATAGTGCACTCAGCCACT GACATATAGAAAGCATTGGTCTCATGCATCCAACACTCCACAAGAGCCGCTATCAACCCGTGATCTGGGGCAACATCTTG AATTAGAGCTAGGTCATAAAATTGAGCAATACGGAGGTGTGGTTCAATTTCTTGAGGAACATTACCTATAAGCTTATGCA ACCTAGAATCGCGCGCTTGTTTCATTCTCAGACCACTAGCTTGTTCCCCGTTCCAAACACATCCTGCAACGTGTATGGAT TGAAGATGCAACAACTCCAAAATAATTGATTTCAAGATTAATCACTTTCCCGACCTTCATAAAATAAAAC
CDS sequence (LotjaGi6g1v0324900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCGGAAAGACAAGGAAGGTTTCGGCGCGCGGCGAAGCAGTGGCGGCCAACTACGCCTTCGGCCCCGCCGAAGACGA CGCAATCATCAAGCACAGGCTCCTCACCCGAACAACAACCACCAGAGGCGAACCACCACTGAAGAAGCTTCAGAAGAAGT TCACCTCCTTCGTCTCCGAGATCGACAAGGACGACGACGACGAAGAAAACTACGCCGACTGCGACAAGCTCGCCAGAGCC TTCTTGCAGGAGCTAACCGCTTTCGAGATCCCGCTTCTCAAGAGCAAGGCGGTTGTGGATGCCAATGTGAGGGAGCAGGA GAATTTCAACGAGTTGAATGATGAGATGAATCGCCAGATCTTGCAGGCGCAGGCGGATATTGAGGTGTTGAAGAAGCAAT TGGAAGAGAGTAAGGTCGAGAGGCGGCATAAGGAGGAGTGCGAGGCTATTAGGAAGTTGATTGCTCTGCAGCCGCCGAGG GCGAAGACGATGAAGGTTAACACGGAGCTGGAGAAAGAGATTGCAGCATTGGAGGCAGAGAATACAGCTGGTTCTAGATT GTTGGAGCTGAGGAAGAAGCAGTTTGCACTTTTGTTGCATGTGGTGGATGAGTTGCAAAACACGATAGAGGAGGACCAAA AGAGTCTTGTTGAGGAAATGAGAATAGCAACTGAGGAGCTTAAGAATGGGATGGAGGACGCAAGTGGGGGGTCGGAATCA ATGGCAATTGACCAGTAA
Protein sequence (LotjaGi6g1v0324900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGKTRKVSARGEAVAANYAFGPAEDDAIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVSEIDKDDDDEENYADCDKLARA FLQELTAFEIPLLKSKAVVDANVREQENFNELNDEMNRQILQAQADIEVLKKQLEESKVERRHKEECEAIRKLIALQPPR AKTMKVNTELEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTIEEDQKSLVEEMRIATEELKNGMEDASGGSES MAIDQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 26 | 244 | 219 | 1.6E-79 | – | |
| PANTHER | 26 | 244 | 219 | 1.6E-79 | – | |
| Pfam | 27 | 164 | 138 | 1.7E-26 | ||
| Coils | 102 | 140 | 39 | - | – | |
| Coils | 160 | 187 | 28 | - | – | |
| MobiDBLite | 226 | 245 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | THO complex part of transcription export complex | The THO complex when it is part of the TREX (TRanscription EXport) complex that is involved in coupling transcription to export of mRNAs to the cytoplasm. In S. cerevisiae, it is composed of four subunits: Hpr1, Tho2, Thp1, and Mft1, while the human complex is composed of 7 subunits. | ||
| Biological process | MRNA processing | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. |
Expression pattern of LotjaGi6g1v0324900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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