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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0326000 |
| Transcript ID | LotjaGi6g1v0326000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | D-aminoacyl-tRNA deacylase; TAIR: AT4G18460.1 D-Tyr-tRNA(Tyr) deacylase family protein; Swiss-Prot: sp|Q54EY1|DTD_DICDI D-tyrosyl-tRNA(Tyr) deacylase; TrEMBL-Plants: tr|A0A0S3S2V1|A0A0S3S2V1_PHAAN D-tyrosyl-tRNA(Tyr) deacylase; Found in the gene: LotjaGi6g1v0326000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64121188..64123589) extracted from Lotus japonicus Gifu genome v1.2.
GAATAAAATAAAATAAAGAAAAAAAGCATACGAAACAATGCAACTATGCAAATGCAGTCCTTGTTCGTGTGTAGGGTTCC ATTCCCATCACCATGTATAAGCATAGGAGTAGACGACAACAACAACAACAGTAAGAGCACAACAGTGAAGAGAAGAAGGA ACTTGAACACAGTGAGAGCAATGCGAGCCGTCGTTCAGCGCGTGGCCTCCGCCTCCGTCGAGGTCGACGGCCGCGTCGTA TCGGAGATTGGCCCCGGCCTCCTCGTCCTCGTCGGAATCCACGATTCCGACGGCACAATCGACGCCGATTACATATGTCG GAAGGTGTTGAATATGAGGCTATTCCCAAATGAAACCACAGGAAAAGCATGGGACATGAGCGTGATGCAGAAGAATTACC AGGTTTTGCTAGGTAAACTAAACTCTGTTCACATTTTGATGAACCTCAATTATGGGAAGAAGAGAATGATTTTTTGTAAT TTGTTTTTTCTGGGTCTGTAACAGTGAGTCAGTTTACTTTGTATGGAATCCTCAAGGGTAACAAGCCGGATTTTCACGTC GCGATGGCGCCTCAGAGAGCTAAACCTTTCTATGCTTCTTTGGTTGACATGTTTAGGAATGCCTATAACCCTGATGCAAT CAAGGGTATGTATGTTATCTATGTTTCAACTTTCATAATATAATTTGTTGCAATGATTGAGACAGATTGAGATTTCATGG TTTTATTTATATTTTGTATTCTCTTTGAGTAATAGTATTAGTAAATAGGAATTGAATGGCAATGCATTTCCATTCATATA TTAAAGATACAAGTTCTGATAGAATGTAGTGTATATGGAATATGGACCTGTAGTGAATTGGATTGGAACCCTTCTCATAT TAAACACGCCTCTTATGCGTTTAATCTAATATCTTATGTATTGCGATTCCCCAACTACCCCAACTATGACTACCTGGGGA ATGACCTGGAGTAGTATGGAACATGTCTTGCTCTTTTTTCCTCTGCAGAAAGTCAGGGTATTTAGGAAACTGTTATCAAA CCCTTTCATTTTGTCTCTTTCCCGGTCGAACTGAGGGATGTTGTGTTTAATGCAGTACTAAGATTAACAAGTTTTATATT GTGATTTGTGGTCAACAATCACGAATGCAGCACAATCTTTCTTTCCATGCTCTATATATTAATCAAATCAAGTTTTTTGC AAAATTTGCATGGCATGTAAATTCGAATGTCTACATTTCTCCTTATGAACAATTTTAATAACCAAGTCTTTTGGTTGATT GTTAGTTAAATTAGAAAAACATAATATTGAGAATGCCTGTGAATATATATGATCATTATTCGTGATGACTGTTCATTTCA TCTCTCATGGCCTATAATTGGAATTAGATTAGCTGTTGTGAAACTTGTTAGTACATAGTGCAGGTTTCCTTCAAGGTGTT TCAGTTGTAATTGTGCTGATTCATTTTTAAATTCAGTTAAATTCTCAGTTGTATTTTTAAGCTCCTTTCAATTTCATTTG CAGATGGTGTATTTGGAGCGAAGATGAAGGTAAAGTTATGTCGCCCAATTTCACTGAGGTGTTTTTGATGTGTTTCAATA CATCTAAACCAGCCTTCTTGTGTTAACAAGCCTCATACTTTGTGATGTTGAGCAGGTAAATTTGGTTAATGATGGACCAG TTACAATGCAGCTTGATTCAAATTCACGCAAGTGAGTTGATTATATTAGTACTTTTGAAAGAAAATGTATGTGTTTTCTG TTGCAACAATATCATTGATAATTCAAATCATACAGGAATACAGCTGATGCAGCAGAATCTTGATCAGTGCTTGACCTGGC TTGATGAAATTGATTTTGAATTCTGTCCCTTTTGTCAGCAAGACCCGATATAAGATATTATTTTTGTTCATTCCATTTGA AGTTCTTTCTCCCTGATGGAATAACTTCACCATTTTATAACAGTATTCAGCTCAAAGAATGTTTCCTTGTCCGCTTCTGC GATCTGGGAATAGAGTTTGGATACTTTTTGGACAAACTAATACCGGATGACCACTAATCTTGATTGAGCGTTTCCATGAC TGAAGGTTTAATGACCATATGGCATATGCCATGCTATATTTGTAAACTAAACCTGTTTTTTTTAAGTTTTGGTTGATCTT AGTGTCCATGGATGACTTTGTAGTATTATTTTGTTTTGTTGGTATGGATCCCTGATTATAATCAACATATGAGGGATTTT GAATATCCCAACATCCGTTTAGCATTTGTTTAATTCAGTTTTAAATTTGTAATTTTTTATTATTATGTTCGATCGATTTT TGAACATCCCATAATATCAGCCATTCATTATTTCTTAAGAATTATTCTACTAACATTAACCTAGCATCGATTTTCTTAAC TA
CDS sequence (LotjaGi6g1v0326000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAATGCAGTCCTTGTTCGTGTGTAGGGTTCCATTCCCATCACCATGTATAAGCATAGGAGTAGACGACAACAACAA CAACAGTAAGAGCACAACAGTGAAGAGAAGAAGGAACTTGAACACAGTGAGAGCAATGCGAGCCGTCGTTCAGCGCGTGG CCTCCGCCTCCGTCGAGGTCGACGGCCGCGTCGTATCGGAGATTGGCCCCGGCCTCCTCGTCCTCGTCGGAATCCACGAT TCCGACGGCACAATCGACGCCGATTACATATGTCGGAAGGTGTTGAATATGAGGCTATTCCCAAATGAAACCACAGGAAA AGCATGGGACATGAGCGTGATGCAGAAGAATTACCAGGTTTTGCTAGTGAGTCAGTTTACTTTGTATGGAATCCTCAAGG GTAACAAGCCGGATTTTCACGTCGCGATGGCGCCTCAGAGAGCTAAACCTTTCTATGCTTCTTTGGTTGACATGTTTAGG AATGCCTATAACCCTGATGCAATCAAGGATGGTGTATTTGGAGCGAAGATGAAGGTAAATTTGGTTAATGATGGACCAGT TACAATGCAGCTTGATTCAAATTCACGCAAGAATACAGCTGATGCAGCAGAATCTTGA
Protein sequence (LotjaGi6g1v0326000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQMQSLFVCRVPFPSPCISIGVDDNNNNSKSTTVKRRRNLNTVRAMRAVVQRVASASVEVDGRVVSEIGPGLLVLVGIHD SDGTIDADYICRKVLNMRLFPNETTGKAWDMSVMQKNYQVLLVSQFTLYGILKGNKPDFHVAMAPQRAKPFYASLVDMFR NAYNPDAIKDGVFGAKMKVNLVNDGPVTMQLDSNSRKNTADAAES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 45 | 193 | 149 | 1.96E-53 | ||
| PANTHER | 46 | 201 | 156 | 1.8E-81 | – | |
| PANTHER | 46 | 201 | 156 | 1.8E-81 | ||
| CDD | 46 | 193 | 148 | 6.77793E-71 | ||
| Hamap | 46 | 193 | 148 | 27.668 | ||
| TIGRFAM | 46 | 193 | 148 | 2.2E-42 | ||
| Gene3D | 46 | 195 | 150 | 8.4E-62 | ||
| Pfam | 47 | 192 | 146 | 2.0E-49 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Aminoacyl-tRNA editing activity | The hydrolysis of an incorrectly aminoacylated tRNA. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Molecular function | D-aminoacyl-tRNA deacylase activity | Catalysis of the reaction: D-aminoacyl-tRNA = D-amino acid + tRNA. Hydrolysis of the removal of D-amino acids from residues in charged tRNA. |
Expression pattern of LotjaGi6g1v0326000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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