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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0328600 |
| Transcript ID | LotjaGi6g1v0328600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myosin heavy chain-like protein, putative; TAIR: AT1G28410.1 myosin heavy chain-like protein; Swiss-Prot: sp|P02469|LAMB1_MOUSE Laminin subunit beta-1; TrEMBL-Plants: tr|A0A151SAJ6|A0A151SAJ6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0328600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64359921..64362946) extracted from Lotus japonicus Gifu genome v1.2.
AATCTTTAAGGACCTTTATAAGCGACTTATGGTCTTGGAGACATGCCCTGATTCGTGGCGATAACAGTAGCTCAACTCAC GTAAACTTTTTTTATTCATAAAAAAAAACAAATAGAGGGATTTTATTGTAGTTAATTTTTTGGAACGATTTTATTGTAGT TAAACCAAAAAGACCAAAATGAAGTCTTCGTCTTCACTGCTCTTGCAATTGAAGAGGCGGGGGAAGAAGGAGTAGTTTGC GCTGCGACTGCGACTAGAGAAATCACATTCAAATCATTCACAATGCTTCCTTCCATCACCATCACCATCACCATCATCAT ACTCTTAGCTTTCTCTTCCCTCGTTCTTCTCCACACTCCCCTTTCAATTTCAGCTCAACCAGTCAACAACCTCACCTCCC AAATCCACCAAATCAACCTCAAAATCGCTCACTTAGGTAACCGCAACTACAACGATTTGTTGAATTCTGAATCCGCCATT TGCTTCTGATATGTAATATCGAATTTCATGTTGTGAATTCTTGTTTTGAGCGCAGAATCGGTTCTTGAAGAAACTGATAA AAGGTTAAAGGAAAGGGACTTGCACCTGCAAGAGTGTGAAAATCGAATGAAAGAAATGTCCGAAAAAATCCATGATCTGC ACTCTACTCTCTCTACGGTGAAGGTTTGATCCGATTTCTGTGACTAACTGCAGTTTCCATTTGATTGTTTACTATTTATG TTATCATGCTTCATATTGATGCATTTTCATGTTGTTTATGTTTGAGAATCATGTACTGACTGACCTATGTTGCAGGATGA TTCATTACATGCTGAGAAACAGATTGTAGCTCTGGAGGAAGAGGTATTTTTTGGTTGTTCACATAACTTTGAGTAATTTA CAGCATTTTATTTTCTGGATTTAAGTGAAAGTTCAACTGATTTGAGAAATAGGTATTGGAATGCATAGGTACAACTTCTT TGGGCTGCATTGAGAAGAAACAACTTTGATATCCATATTTTGAAATCTAAGGCGCAAGATACTGAAGAGAGCCTGGAAGA GGTTACTTCAAGAGTTGAAAAGGTTTTGGGTTGTCTATGCTGACATTTATTATTGATTGGTATTTATGTTGTATTTTTTT CATATATGAACCGGTAAAGTTTCACAAGTTCTGGTTATAGTGGTTGCTATGGTCCACACTGAGGAAACTTTTTTTGCGCG TTAAAGGAAGTGAATGATTTTTCAACAGTTTGTACTCTAGTGAACCACCAACTAGCGAGTTCCTTCATGCAGCACTAGTG GTCATGAAGAATCTGTTATAATGCAGTGTATAGTATATTTTAGCTCACAAAGGTTTCCGCCGATATAAATACACATTCAG AATTTGCTGACTTTATATGAAATTTAACATTTTTGCCGACACATTATCTTGAGGCTTGTTTGAGATAGAGTATTGATCCT TGCATAAGTTGATCTTATTCATCTTTTCCATTCAGATGGGTGACATTGTGACTGAACAGTGGATTCAAATTCAGCATCTT GAGCAGGCTCTTCACTCTACTAAAGTATGTAGTTCATTCTAGTTCATAAATTGTTGGAAACCTTGACAGGTTTACTGTAT TTGTTCATTCGTTTTTTAAGCTTCTCATTTATCACCTTTTTTGCATGTGTGTGTTTGTGGAAAGATGAGGACTTTAAAGG CTCAAAGGCTAGCAAGCCTAACAAGGTGCACATTCTTGAAGGTAAATTTGAAGTGTTTAAGATAACTAGTTTGGTTCCTT GTTGTTAATCTAAATATAAGTAATAGTTTACCTCGTTTGCAATGGTATTAAGTAGTCCAGTGTGGAATTGCTGAGCCTTC TCAGCAATCAGCTCATTTCTATATGCCATGAATCATAATTTCTCATGCATTTTATCACATCTTCGTTTGTTCCAAAGTTT ATCTACAGCATTCTTGATGATATTCGGGCACTGGATTCATATGTATTTGGTGAAAGGACTATAGACAGTTCACTCATCTC AAGGGCTGTGGATCAGTTGAAGAGATGCTTTTCAATGATAAAAAAGTATCACCATCAGGTTTGCATGAAAATACATACAA CTTTTTTCTATTTGATATATATTTGTGAAAGAAAATGGTCCTTTATTCATTTATGAGAATATGAAAAGCAGTTTCTCTGT GGAAAATGTTACTTGAAGTTTCATAATATCACATGGTTTCTCATGCTACAATTCCAGCACTTGTAAATTTTGAATTTCAA TAGCTTCGCAATAACGTGTGTGGGGTAATTATAAGTCGAATGTCTATGTAGCTTCAAGGTTTGATCAAAGATCTGATGAA GAGAAATGAATTGACTGCAGCTCTTGCAAATGATGAATTAGTTTTTTTCCTGGTAAGCTTAAATCATACATTTCACTTAT CAAATTAAATGTTTTAGATGAATAAACTTTAGTCTTTTGACAGCTCTTTACATGGGGTATCATTCTTTACTTGTTTTCAG GTTTCTGTTCTAGTCACTTTTCCATTAATGAGTGCCTGGATATTCCTCTCACCATAGTTGCTTCCAAGTTCCTATAGTGA CACCTGATGGGCTTTCTTCCTATACTTGTGCATAGAGAACATGTGACAGATTTCTCAGTGATGGTGGACATGTAGTTCTG ATCTTGCATGGTAGCAAGTAGCCGAGAATACTTCTTAGTGTGAATTTTGACTGTAGAATTTTAATGTCGCAGCCTCAAAC TTTTGAAGGGTCCTCTGCAAGCCCTTAGCACTTGCATGCGTGTCTTATTAGATTAGGGACTTTAGAGATGGAATGAAACT GGTATGATAGGTAAAACAAAAAGGGGAGCGGCAAGAGAGGAAAATTGGGTAAGTGAGAAACATTGGTCATTACTATTCAT GGTTTTTTAGGGAATGCACGAATTGTGTGTGTTTTTGGATTAACATTTTGCAGAATTGATTCTCTAACAAATAGAGTTGA CTATTGTAAATGTGAGTTCTAGTCAGTATACACTTGTATGAATAAAGTGATTTTTAAAAAAAAAAA
CDS sequence (LotjaGi6g1v0328600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCCTTCCATCACCATCACCATCACCATCATCATACTCTTAGCTTTCTCTTCCCTCGTTCTTCTCCACACTCCCCT TTCAATTTCAGCTCAACCAGTCAACAACCTCACCTCCCAAATCCACCAAATCAACCTCAAAATCGCTCACTTAGAATCGG TTCTTGAAGAAACTGATAAAAGGTTAAAGGAAAGGGACTTGCACCTGCAAGAGTGTGAAAATCGAATGAAAGAAATGTCC GAAAAAATCCATGATCTGCACTCTACTCTCTCTACGGTGAAGGATGATTCATTACATGCTGAGAAACAGATTGTAGCTCT GGAGGAAGAGGTACAACTTCTTTGGGCTGCATTGAGAAGAAACAACTTTGATATCCATATTTTGAAATCTAAGGCGCAAG ATACTGAAGAGAGCCTGGAAGAGGTTACTTCAAGAGTTGAAAAGATGGGTGACATTGTGACTGAACAGTGGATTCAAATT CAGCATCTTGAGCAGGCTCTTCACTCTACTAAAATGAGGACTTTAAAGGCTCAAAGGCTAGCAAGCCTAACAAGGTGCAC ATTCTTGAAGTTTATCTACAGCATTCTTGATGATATTCGGGCACTGGATTCATATGTATTTGGTGAAAGGACTATAGACA GTTCACTCATCTCAAGGGCTGTGGATCAGTTGAAGAGATGCTTTTCAATGATAAAAAAGTATCACCATCAGCTTCAAGGT TTGATCAAAGATCTGATGAAGAGAAATGAATTGACTGCAGCTCTTGCAAATGATGAATTAGTTTTTTTCCTGGTTTCTGT TCTAGTCACTTTTCCATTAATGAGTGCCTGGATATTCCTCTCACCATAG
Protein sequence (LotjaGi6g1v0328600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPSITITITIIILLAFSSLVLLHTPLSISAQPVNNLTSQIHQINLKIAHLESVLEETDKRLKERDLHLQECENRMKEMS EKIHDLHSTLSTVKDDSLHAEKQIVALEEEVQLLWAALRRNNFDIHILKSKAQDTEESLEEVTSRVEKMGDIVTEQWIQI QHLEQALHSTKMRTLKAQRLASLTRCTFLKFIYSILDDIRALDSYVFGERTIDSSLISRAVDQLKRCFSMIKKYHHQLQG LIKDLMKRNELTAALANDELVFFLVSVLVTFPLMSAWIFLSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 31 | 31 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 5 | 23 | 19 | - | – | |
| PANTHER | 11 | 281 | 271 | 3.0E-102 | – | |
| PANTHER | 11 | 281 | 271 | 3.0E-102 | – | |
| Phobius | 24 | 31 | 8 | - | – | |
| Phobius | 32 | 259 | 228 | - | – | |
| SUPERFAMILY | 36 | 149 | 114 | 5.89E-5 | – | |
| Coils | 62 | 110 | 49 | - | – | |
| Coils | 125 | 145 | 21 | - | – | |
| TMHMM | 260 | 279 | 20 | - | – | |
| Phobius | 260 | 280 | 21 | - | – | |
| Phobius | 281 | 282 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0328600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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