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LotjaGi6g1v0333500.1

Overview

Field Value
Gene ID LotjaGi6g1v0333500
Transcript ID LotjaGi6g1v0333500.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description RING finger protein; TAIR: AT3G47160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZM74|RN141_CHICK RING finger protein 141; TrEMBL-Plants: tr|I3T0X1|I3T0X1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0333500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:64823053..64827826) extracted from Lotus japonicus Gifu genome v1.2.

TAAATATTCATCTACTAACTTCACTAAAATATTAAAATAAAAATAAAAATGATCATATTTCATGGCGTGGCGACACGTGT CCACCCCAAAGTTCTGGTGTAGGGTCATGGCGTTGAAGAAGAGACTCAGTGCGTGACAGGAAGAGGCGGAACCTGCTATT TCATAACACAGAGACAAAAAAGTATCAAACTTTGTTGTGGGTTTTAGATTGTTGTTTGGTTTTTGATTGAAAAGTTTTGT CGTTTGAGACTCCGAGTTAGAGAGAAACTACTAGTATTATTATGTACATAGCTTCTTCTTCTTCTTCTTCCATGGGAAGG TCTTTCAAGGAATCCCTCAAACTTCTTGAAGCTGATATCCACCATGCCAATACCCTGTAAGTTAGTCACCTTCTTTCTTT ACCCTTTAAACTTTTTATTTTATTTTGTTTACAATTTTAGATACCCTTTTTTTTTTTTTATCTATTTTGATCATGAGTTA GATTATTTTGGTTTGAGAATTATTTTCTGGGGTTTAGCTTCAACAGCTAATGATTTTTTTCTAGTTAAGTCAACCATCAA ATTTATTTCATAAATATGGTGTATTTAATTCATTGCAAATTCATGGTTTCATTAGTTTTCTGTTTTGTGATTATCCACTC CAGTTACTGTGCCTTATCTTTCTCTGTCTCTATGTCCGGTTGGGGATAATTTGATACTTATAGAAACCAGCAGCAAACAT ACTGTGGAAAGTTTGGCGAAGTTTTTCCTCTGGCTTCCACCTCCCTCATGTTTTGTTTTTTTAATAGTAGTGACATCTAT ATACATCTCAGTCTATCTCTTGGTTTTTTGTTGTTATTTTTGTAATTTCATTTATCTGAAAATTTGTTTTGTCGGTATGG TGACAGTATTTTTTCTTCTCTTATCACCTTTTCTGGTAGGGTAATGATCCCCTAAGTGATTTGGCTTACTAGCAACTACT GCATGATGATTTTGATACCAATTTGTTGTTTCCTGATCTTTGATGTGCAATGCATTATGAGCCAATTTGGATTGGCCCAA AAAGTACTTATTGGCTATTGCCTATTGGAGCTTATTAGTGCTTTTTCTAGCATAGAAGCTCCAATAAGTGCTCTTTGGTG TGTATCCAAACGTGCTCTATATGTCCCAGCTACGGTGACACAGGCTGCCTAGTCCCCCCCCCCCCCCCCCCCCCCCAAAT GAGTTGTTTGTTTTGTTGTGTCTTTTTAAAGTCCAACATTGGCCAGTGTGATATGGCTAAATAAGTCCTTATCTAGAGTC GAGCAATCCTCATATTTGAGCTAGTTTTGAGGTAGAGTTAGACCTAACTGGAATTCTAAGATGGTATTATGAGCCCTTAG TGAAATTTGTCTATAGAAGTTTCAGACATAACAGGCTTAAGTTCTGAATGGTGTTCTTTCTAAACATTGAAAACTGGAAA TGATTTAAGTCTTTGGAATGATATCTTTTCTTCCTTGTCTCAGCCATTCTCATTACTTATATCAGTATATGAGTATCAAT CATCATGCAATTGGGTGTGCAGGGCCTCGGATTTTCCGAGGGAATATGATGGTGCGTGCCTTCAGATGAGAATGTCATAC AGTCCAGCAGCACGCCTGTTTCTTTTTTTGGTGCAATGGACAGACTGCAATCTTGCCGGAGCTCTTGGACTGTTGAGAAT CCTAATTTACAAGGTAAGGCGTTTTGGTTTTTGAATGTTCATTTTGAACTGAGAAATTTTGTCAAGGTGTCAAAATTTCC CTCATGCTGCAGGTGTATGTGGACGGGACAACTACCATGTCTGTCCATGAAAGAAAAGCAAGTATTAGGGAATTCTATGG TATATCTTCCTTATCTTCCTTTTTTTATTATAATAAATTAGTTTGCATTTAGTCTATGTGAATTGCTAATGTACTGAATT TCTGTATTGTTCAGGGTTCATATATCCCTCTTTATTGCAACTTCAAAAGGGTGTCACTGATACAGAGGATAAAAAACAGA AGGCTGTTTGCATGGAAAGGTATCGAAGAAGAGATGATGAGGAGGATAGACAGTCTTCAGACATAGACATTGAAAGAGAA GAAGAATGTGGAATATGCATGGAAATGAATAGTAAGATTGTTTTGCCAGACTGCAACCACGCCATGTGCCTGAAATGTTA CCATGAATGGTACTTTAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACAC ACACTCCTTATTTTATAATCATGACTTGTTGAAATTAGGAAGTATGAGATTTTTGGGTTTTCATAGGTTCTGATTGGCTC AGTTTGGTTGAATCATAATTGTTCATAACCATGTAAAGTAAGAGGCATTCTGTTATGATTTATGAGTGATTTTGCAAGTA GTGCAGGCTGTGCAGCGGTTATCAGTCTCACCATAAATGACCTGGTTTCGATAGGTCCTTATCATGTGTCCGGATCTGAC ACTGATATATGTACAATAATATACTTGCATTATATGAATGCTGCTTTCAAAGTACTTCCCCCCCTGAAAATTATTATATA GGGACTATGGTGAGGGAAATGCACGAATGATTATGTTTACTACTCACCTAACTCCATTTTTCAAGAATGATCAAGTGCTC AAAGATTATCTAATTACTAATAATGAATCATTACAAACATAAGTAGGAAAATAAGGACAGCCAGCTGTTATAAAGCTCCC ACCATGGTGCAGTCCAGGGAAGGGTTGGACCTATTGTGGATCTATTGTAGGCAGCCTTACTTGCATTTTTGCAAGAGGCC GATTCAATGACATGAACTTATGACCCCCAGTCACTCAGCACTCAGCAGCAACTCCAACTGCTGCATCAAGGCTCCCCTTA AAAGATTATTCAACAATCATTCAAGTTGTATTTATAAGACATAAAATAATATATTGTGTGGGACTGTGGGTAATATTTGA TGTGATTTTGTTCCCTACATATCTAGGTCAGTAGTTTTGAATTGTGTGGTCTAGTGGTGATCATTGCTATTTAGACATGA GGAAGGAGTAACAATAAGGGCTCTTATTAACTTGGAGAAATGAAACAGCTTCTTATGCTGTACCAGTATTGTATTGCAAT GATCAGAGAAGTATAAATATGTTGCTATTTTTCTTGTGGAACTATTATGGGATATCCAACCAGATTCTAGAACTAGATTT CTCAGCCAAAGCGAGTTGAAAGAAAATATTCACATTGTTACTTGCTTATGAGAATAGGACAATAGCTTCGGATAAGCTAA TAATCTTTTTGGATTCTGTGAACTTGCCAAGCATACTTGTTGGCATCAGGGTTTATTTGTAGATTAATGCTTTAATTGGA ACTTAATGGTTTAATTAGAATTGATCAGAAGTATACGCTATAAAGATTAGACTATGAAGGTTGCTTTTTAGGCTTTTTAG GCTTTATGATTGTTATATGATTCTAATTTAACTTGTATGATATATCTGATGTATTGTTTGGTGTTCTCATTATTCCTGCA CCATGTCTCAGTATATGAAATTGTGTTCGCCTGTTTAGTTGAAAGCTATTTGTAACTTGACATGTTTTGCAGGAGAACAA GATCACAGTCATGCCCCTTTTGCCGAGACAGTCTTGAGAGTGTGAACTCAGGTGATCTGTGGGTATTAACTGATAGTAGG GATGTGGTAGACATGGCAACAGTGACAAGGGAGAATATTAGAAGACTTTTCATGTACATAGATAAGTTGCCTCTGATCAT TCCAGATTCCCTTTTTGATACATATGACTCTCACCTAAGATAAGTGATTGCGACAGACACATTTTGCTGTTCTGGTGTGA TCTTGGATGGGTAGTAGTCTTCAATTTAGTCACATAAACTTGTGATTCGGTAAATTTAGTGCATGTTTGGTTTCACGATT TGCACAGAATCCAACGCACACTTACTGAGAACTGAGAAGCTAAGACAAAGCTTCTAACCTATAACATTTCATCGTGGAAC CAACATGTTATTTAGAGTTGCAGTGCTTGCTTCCCTGGTCTTCGTGAAGTATCCAGCGGCCCTAAGTTTACTATTGTCTG TTAGTTAAGTTGAGATGGTAAATTGTATGTAGCTCATGTGTATATCCTGTACAGATTAAATTACTTATTAAGAAGAGGTT TGCATATTCTGTGCCTCTCTGATAATTGAAAATGCGAATCTTTCGAGTTCAGAAACACCCTCAGTACTCCCCGTCCATGC CAATGGATAGGCAAAAAGTAAATGAAACTCTTGTTGCGGATGCGATGAAAATGTTTTTACATTAACTATACTGATATCAA AATACACACTACAGTACTTCACCGTTAACTACCTGCAGTTTTAAAAACAGCAAATGTACTTGTAGTGAGTTTCGACTCAT CTAAAGTGGGTGAATTAGGTGTGTGAATCACAACTGGTTAATTGAAAGACAATGATATACATGCACGGGCAGTGTAATTT GTTTTCTTAATGCATACATCTCATTATTTTGCAGCATAAAGTGAGAAATTTTAGAAAATAAGTGATTAGATATATCTGTG CAGAATTCTATTGCGTATCACTGTCACATATTAGTGCATATAAATTACGTGGAGACTGGAGACTTATTTTTGTTGAATGA GTTATGTTGGTTGAGGCTAGTCATATACTTTTACGTCTACTATAATTTATAATATTTTTCAATTTTAACTTTTAACTTTA TAATTAATGATTGGAATCTTAGGGAAATTAGCTGTACACATTCAAAAAAGTGAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0333500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTACATAGCTTCTTCTTCTTCTTCTTCCATGGGAAGGTCTTTCAAGGAATCCCTCAAACTTCTTGAAGCTGATATCCA CCATGCCAATACCCTGGCCTCGGATTTTCCGAGGGAATATGATGGTGCGTGCCTTCAGATGAGAATGTCATACAGTCCAG CAGCACGCCTGTTTCTTTTTTTGGTGCAATGGACAGACTGCAATCTTGCCGGAGCTCTTGGACTGTTGAGAATCCTAATT TACAAGGTGTATGTGGACGGGACAACTACCATGTCTGTCCATGAAAGAAAAGCAAGTATTAGGGAATTCTATGGGTTCAT ATATCCCTCTTTATTGCAACTTCAAAAGGGTGTCACTGATACAGAGGATAAAAAACAGAAGGCTGTTTGCATGGAAAGGT ATCGAAGAAGAGATGATGAGGAGGATAGACAGTCTTCAGACATAGACATTGAAAGAGAAGAAGAATGTGGAATATGCATG GAAATGAATAGTAAGATTGTTTTGCCAGACTGCAACCACGCCATGTGCCTGAAATGTTACCATGAATGGAGAACAAGATC ACAGTCATGCCCCTTTTGCCGAGACAGTCTTGAGAGTGTGAACTCAGGTGATCTGTGGGTATTAACTGATAGTAGGGATG TGGTAGACATGGCAACAGTGACAAGGGAGAATATTAGAAGACTTTTCATGTACATAGATAAGTTGCCTCTGATCATTCCA GATTCCCTTTTTGATACATATGACTCTCACCTAAGATAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0333500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MYIASSSSSSMGRSFKESLKLLEADIHHANTLASDFPREYDGACLQMRMSYSPAARLFLFLVQWTDCNLAGALGLLRILI YKVYVDGTTTMSVHERKASIREFYGFIYPSLLQLQKGVTDTEDKKQKAVCMERYRRRDDEEDRQSSDIDIEREEECGICM EMNSKIVLPDCNHAMCLKCYHEWRTRSQSCPFCRDSLESVNSGDLWVLTDSRDVVDMATVTRENIRRLFMYIDKLPLIIP DSLFDTYDSHLR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR15315:SF70
10 252 243 1.3E-133 –
PANTHER
PTHR15315
10 252 243 1.3E-133 –
Gene3D
G3DSA:3.30.40.10
121 222 102 6.3E-14
IPR013083
SUPERFAMILY
SSF57850
150 201 52 2.1E-12 –
Pfam
PF13920
153 199 47 1.0E-9 –
SMART
SM00184
156 193 38 4.0E-6
IPR001841
ProSiteProfiles
PS50089
156 194 39 12.076
IPR001841
ProSitePatterns
PS00518
171 180 10 -
IPR017907

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0333500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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