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LotjaGi6g1v0333500.4

Overview

Field Value
Gene ID LotjaGi6g1v0333500
Transcript ID LotjaGi6g1v0333500.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description RING finger protein; TAIR: AT3G47160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2; TrEMBL-Plants: tr|I3T0X1|I3T0X1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0333500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:64825489..64826072) extracted from Lotus japonicus Gifu genome v1.2.

ATTTCCCTCATGCTGCAGGTGTATGTGGACGGGACAACTACCATGTCTGTCCATGAAAGAAAAGCAAGTATTAGGGAATT CTATGGTATATCTTCCTTATCTTCCTTTTTTTATTATAATAAATTAGTTTGCATTTAGTCTATGTGAATTGCTAATGTAC TGAATTTCTGTATTGTTCAGGGTTCATATATCCCTCTTTATTGCAACTTCAAAAGGGTGTCACTGATACAGAGGATAAAA AACAGAAGGCTGTTTGCATGGAAAGGTATCGAAGAAGAGATGATGAGGAGGATAGACAGTCTTCAGACATAGACATTGAA AGAGAAGAAGAATGTGGAATATGCATGGAAATGAATAGTAAGATTGTTTTGCCAGACTGCAACCACGCCATGTGCCTGAA ATGTTACCATGAATGGTACTTTAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACAC ACACACACACTCCTTATTTTATAATCATGACTTGTTGAAATTAGGAAGTATGAGATTTTTGGGTTTTCATAGGTTCTGAT TGGCTCAGTTTGGTTGAATCATAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0333500.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTGCAGGTGTATGTGGACGGGACAACTACCATGTCTGTCCATGAAAGAAAAGCAAGTATTAGGGAATTCTATGGGTT CATATATCCCTCTTTATTGCAACTTCAAAAGGGTGTCACTGATACAGAGGATAAAAAACAGAAGGCTGTTTGCATGGAAA GGTATCGAAGAAGAGATGATGAGGAGGATAGACAGTCTTCAGACATAGACATTGAAAGAGAAGAAGAATGTGGAATATGC ATGGAAATGAATAGTAAGATTGTTTTGCCAGACTGCAACCACGCCATGTGCCTGAAATGTTACCATGAATGTTTGGTTGA ATCATAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0333500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLQVYVDGTTTMSVHERKASIREFYGFIYPSLLQLQKGVTDTEDKKQKAVCMERYRRRDDEEDRQSSDIDIEREEECGIC MEMNSKIVLPDCNHAMCLKCYHECLVES
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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR15315:SF37
3 103 101 6.6E-48 –
PANTHER
PTHR15315
3 103 101 6.6E-48 –
Gene3D
G3DSA:3.30.40.10
52 108 57 6.3E-7
IPR013083
SUPERFAMILY
SSF57850
70 105 36 4.86E-7 –
ProSitePatterns
PS00518
92 101 10 -
IPR017907

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0333500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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