Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi6g1v0337600
Transcript ID	LotjaGi6g1v0337600.1
Related isoforms 2	LotjaGi6g1v0337600.2 LotjaGi6g1v0337600.3
Lotus japonicus genome version	Gifu v1.2
Description	Eukaryotic translation initiation factor 1A; TAIR: AT2G40780.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp\|Q3THJ3\|EIF1A_MOUSE Probable RNA-binding protein EIF1AD; TrEMBL-Plants: tr\|V7AS60\|V7AS60_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0337600
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:65208318..65215193) extracted from Lotus japonicus Gifu genome v1.2.

CATATTTTGGGCCACAAAAAATAAAATAAAAAGGGCAAATGTAAAGGTAAGGGAAAAATTCAGGGACTAGTTGATAAAAA CAAAATTCTGAAACCCTATTCTTTGACTTGCTCGATTGTTCATTGCTGACGCACGGCTTCACCACTTCCTTCACGCACGG CTTCACCTCTGTTCACCATTGTTCAATTGCTCCTTCCACCAAACCACCAAGCAGAAGCAGGTAAATTTCTTAATCAATTG TGACTTTGTCTCTGTCCTCTGACTCTGATTCTCTGTGAATCGATTGTGTTGGCGTGAGTGGGTGAGGCCGTGAGGGTCTG GAACTGTATCTCTGTGAATCGATTGTGCTGGCGTGGGTGGGTGAGAGTGTGAGACGGTGAGTGAAGCAAGGGGAGCAGTC GGCGACGGTGGGTGAGTGAAGAGGGAGTGGCGGTGTGGGAAGGGGGTGAGTGAAGAAGTGAGACTGTGAGAGACAGAGAG AGTGTGGGCTATGTGGCCTGTGGGTGGGCGGTTTGTCAATTTCATTGTGAAGCATGTAGTCATTGTGGTGAAAGAGTGAG TGAGAGAGACAGGGTGAGAATTTTGAATCTGATGATGGATTCCACCCTCTGATGCTTTGCGTTTTTTTAAGCTATGATCC TCATGAAAGTTATGATCTATTCTTGATTCACATCATCCACAAACTCTCCAGTTTTTTATTTCAATTTCGCACTCGTTTTC ATCCATTATTCTGGTGGCTTTCCATTTTATTATACTGATATGTTATATCATGTTGAAGGATTTTTCATACACTCGGATGC AACATTCATAGCCCAGTGGCATTTTTTAGCAAGGAATTGCCAGCTAGTTGCGATGTGTTATAAGGTGGTGGATTCTAACT CAAAGTTAATTCCTTAGTTTAGTATTTGATTTTATCTTATTTAATATATATACCATTTTGGTCATTACATTATACACTAA CATACAATTTTAGTCAAAGTTACTCATATGAAAGCATCCAAACGTAAATCACGTCTTTGTCAGATTCAATTTTATCCGAT CCAAATCTCCTAACTGATCCAAACATATCCAATGTTGCCCAGGCTCCACAAAATTTCTGGATCCGCCACTGCCAGCAGCC ACTCGCCCACCACGCCGCGCCACTGCACCTCCCGCCGCATCAACCAGGTTTGCTCCTCCTCTCTTATCTCTTTCCCCTTG TCTACCTAAAGCCTATAATTTCAACGTTATGTATTGTTTGGTACTTTAATAACACAGCACACAATTAGCCTTACTTTCTG CTAGTGTTTTGTATAATTATGATTGTATCTTCAATCGTGTTTTTATTTATTTATTATTTTACCTATTACTGCAATGGAAA AATGAAAATTTGATATCTTGTGTTGCTTACATTCTTTCTGTTTTGCTCTGGTTACTTGTAACTTAGTTTAGAACTCAACT TTTCCATTGCTTAGTTTTGAACCGTTTGTTGGGTGACCATGCCTGCTTCAATGAATCTTTCAAGAAGACATGGATTAAAA TGATTGAACAGGCTTCTTTGCTGATTTGTTTGAATATACCATTAATTTCATGTTGGTTAGTGGAGGTGTTTTTTTATCTA GTTAAATTCAACTGTTTCAGTGTTGGAGTTGTGTGCCATGTAAATGAAATGAGAATAGAGACAAATATATGCTAGATATT CTTCATATTCTGTATACACCACATAACTGACTTAACCTTGATGTTTTGTTAAGAATGTAACTTTCAATGTAAGCAACCCA TTCCTTTTGGACGCAGGGAGCACATCCACACATGTGCATGACTATGTATAGTGCCTAGGTTTACTTATCATGATGATAGT GTTTTTGAGATAAACTGCATATCACAATTTACTTGGGTATATAGTTCTTATTTAAGTTACCATTTTAATTTGTCTCAAGG TAGCAGATTTAACCGTTGAGATGTTCTTAGTACAGAATCTTTTAAAACTGAGCTTTTAAAAATCCAAATAGCATGTAAAA GAGCTAGCCTCGTACAATTGCCAATTCACTATCAGAATCTTAACACTTAAGGCTACTGTCGTGGTCAGGTACAAGAGTTT AAACTTTAAATGGGGGTGTCAGGGCAGGGGGATATACAAGATAAGAATAATTTAGAATCAAATTCTCACCACGTCAATAA TAGTGTAGTAGTAGACTCAAGTAAAAGAAAATGGGATGGTAACTAATCAACCTCTAAACTCATATCTTAGCTAAGTAAAA TCCAAATATCAATGAGGACCTCAAAAAGAATTAAGAGCTAAGTTAATCAAATCACGTCTTTCCTACACCAGGAAACATCA AGGGTCTAATCGTGGATGATTTTATGAAGTCATGAAGTCTTTACTGTGAGTTTTTATCCTTCAAAGCACTAATGTTTTGC AATCTCCCCCATTTCCACCTCCACCAGCGTGAGAAGAATAAAAGCAAGAGAAGTGAGAGATATAATGGAGGTGATGGGAA AAGAAGAGAAAGATAGGAAGAAAAAAAATAATGGATGGGAGGGAGGTAAAGTGGATGTGAATATATCAAAGTTGTCTTCA AAATGAGTTTAACATTCTGAGCTCTTTGGTTATCTCTAAATTAAGGGTAAAAGTAAAAGTAATAAACTAATTATTCTAAA CGTGAAATGAATAGACTCAAGGTTGTCAAATTCACAATTATGCGTAAACTCCTTTAGAGTCCGTACCGAATTCACCAACA ATGAAAAAAATACTTGTGAAAACCTGTTATGGTATACAAAGATAGTAAACTAGTACCATTGAAGATACATTAACCAAAGG AATTCAACATACCAACTTCATACTAAAGCAAACTTCAACAAAGGACAATAATAGAGTGCAATATTACTTAGTACATCTCC TAAAGCATGCATAATAACCAAATCATAAGTTCTTGTAGCAATAACCAAGCAAGGGGCATTCTTCCTAGATTTAAATGCAA CAACACATGTGTTGCTTGAAGACTTTGATGAACCAGTCTCACACATTCTGATATGAAATATGAATAATATCAGAAAAAAA AAACAGAGTTCAGCAATTCAAGGCTCAGTTCAGTTAAAGGTTCAAAATTTCGATACCCAAAAAGCTGAATAGATAAACAG AGGGATGTGAAGGGGAGAAGAATTCAATGGTAGAAGAAGTGAATATTACTAGAAATCACTCACTGGTCACTGTGAAAGCA AGGGTGCGAGAAGGAGAAGCTCTTGCGAAACCTTGTTCAAGCTTCCGGCGGCGGAAAAGGAGAAGCATGGCAGCGGAGAA GCAACTCGCGGTGGCAGAGGAGCTATGTGAGGGGCGGTGGTGGTTCACGAGCAACAGGGTCTTCTGAGTTTCGAGACTCA CCAAGAGAAAGGGTATGAAAACAAAGCCTCACTAGCTGAACGGTGTCTTTCACGGTTTTGAAACAGTCACTGTTTTTATC TTTATACTTTTTTTTTTCTTGCAGAGACAGTAAAAGGAAAATTGGAATGGTTTTTTTTACCTCTGGGATTAGGCTTTAAG ATCATGTATTTAGAAAAAAATTCAGATTCTGATGCTGAGTATTATGCTTTTGCAGTGCTGGAGATTATGCTTTCTTGTCC GTTTTAGTGGTTGAAAATTGAAATGATGCACTGGCTGGCATTTGAAACCTCAGCTTATTTGTATTTCTGAACATGTATGA GATTGAGTGATATATAATTATATAAAGCAATGCTATTTAGAATGAAAATAGTAGACATAAAACACATGGTAGTTCAACAG GAAATCACGAGATTATTATAAAAAACAATTCAAATTGTTGTACAATTGAAATATTCCACATACTGTTTGAGCACTCTCGT CAAGTGCCATCTCGTGCTATTTAGTGTTACCGAATTATATGTATTTCTAAGGCTGCAAATGTTTACATAATTTATAACAA TTCATTTTGAAATATTTTCATGTGCATTTTTTTTTAAAAAAATTGTATTAATCTATTTAGCTTCCAATTGTGATATGCAG GAGAGTTTCGTGAGAAACCTTGGCAACAAGAAAATTGAAGTTTTTGGTGGCCATGAAAGGAGGAAGAAAGAATTTGAAAA GGGCCACAGAGGAAACACATGTAACCCTTCAAGATGGGCAAAGCATCACGCAAGTGGTGTCTCTTCGAGGCTCCAATCTC ATTGAGGTACTGGTTTTTCAAGTTTTAACTCTTCCAAATTTTCCCTTTTCTGTATTTTATGCTGAGAAAACACCTACAAA ATAATTGAGGTGAAATTTAAAAACTGTTAAAAAGAACAAATCAATGAATATTGTATGGAAGTTCGCATCTGTGGAAAGAA CAGGCATATTTATTGAAAAAGTAACAAGAAAAGAAACACATTGTAGTTATTAACATAGATGATGGTTGGAAGTTCTACCC ACAAACTTTGGTACTTCCTTTACTTTATGAGATTCTTAGGTTAACAACTTCTAATGGAAATTTGGGGTTTTCAGTGTTTT TACCAGCTCTGCAAGAAAGAAAATAGAACCCAAATTAGTGATTGTTTCAAAAGCCGGAAAGAAAAAAATAAAAATGGAAA AACAAAGCAAGAAGACATGTGAATCCTGTTAATATTCAAGTAATGTCACGTCAATAGTCAATTCCTTTCGTCAACAGAGA GTGTGCAGACTGATTTGCAAGACTGTGTTTATATTAGTTTCTAGGTTTCTTTATGATCATGTTAATATTTTTCGGGTAAA CGCCACACCATTGTTTACTTGTGCATATAGTACTTATTTATCTTTTGATTCTTTTTGTCTTGATTTGTCTCAAGGTCATG GATGCACGTGGTGAGAAATCACTAGCTCTATTTCCTGCTAAGTTTCAGAAAAGCATGTGGATAAAACGAGGTTTGTCCTA TTTATGAATCAATTGAATGCTTACTATAGAAATTTAAAAGCTACTCAATATGTTATCGACATTATTTTTATAACAAACAA TTAATTGCTTTAGTGATAATTATTTCTCAATCTTGGTGAACCAATGATTCTCTCTTATCATTGTTGATTTTCTCAAGCTC TGGACTTTAGTGAAAGCATTACTTGACGTATGCTCAATCTTGGAAAGGATAGTGCCTCTATCTTCAAATGTTCCTAACTA GCTCTTTTTGCTCAACCCTTTACTGTGTCATTCTTAAAATAAAAATCTAAGCTGACCATATAGGTTATACAACTATTGAA AAACCAGGGCAAGTCCACTTGGCCACCTCATTTTTGTTGAGAAGTCCGTAACCTAACCGTATACATGGTGAACACTACTT GAAACATTAATTGCGGGCTATTTGCATAATCTGAAAATTGAACCGTGTCTTGGTTTTGAAAACCATATATATATTTGTTT TTCTTGGTCTGCCTCCACTTCATTGATCAACCAACCTTGATGCTTTCTCAATGTGCAGGGAGCTTCGTAGTAGTTGATGA CGCTGGAAAGGAAAAGGCTCTGGAATCAGGTAGCAAGGTTGCATGTCTTGTTTCTCAAGTTCTTTTCTATGAACAAGTTC GAGCACTACAGAAATCTCCAGAATGGTGTGCTCTTGTTTCCAGCGTTGATTTGTATAGCTTTATTTGCATTGCGCTCCCT TGATGAATAATCATATACTCACTATCTATATTGAACATGTTTTCTTGACGGATCACTCTCTGTTAAACTTGTATTTTACA TGGTAGCATCTAATGGCATCTTAGTATCTTACCAATATACTCATTTTTCAATCATTCTTTCCATGTAGGCCTGAAATTTT TAAATCTGAGATGGTAGATGATTCAAACGAAACAACCACCTCCCAACAAGTAAATGAGATGGACGAGAGTGATGACGATG ATGATGGACTACCTCCATTGGAAGCCAATACAAACAGGATTAGGCCTCCTGAGTTCGATGAAGATACAGAATCCAATTCA GATACAGATGATTGAATAACATAATTAGGTTTTCATACTTGCATATGGATGATTACATTCAACTTCAATCATCAATTCAT GTAAAAGAATGTTCTTTTCTTATCTTCGTGTGCTGATTCTTCTGAGTATAGATGTTTCAACTTGTAACTGAACTCAAAAA AAAGAATTGAGTTTGCATTGACATGCCAAACTATAAAACACAGACAGACCGTAAATTATTTGTTTGATTAATTGCCTTTT GAACTGCTTGATTTTCTTTGGATATTATTTTGAGTTTACATGTATTCTTTATCGGAGTCAATCTTGTTCAAGCCGGAAAC ATTTATGATGAGTTAACTTTTCTAGCGGAATATTTTTCATCTATAATACTCAAACAATATCATGCTTAAGGAGAATCAAA CATATACTACTTGAAGCAATCCCTAGTTGGTTCTCTTAGCATATTTGAGAGTGAGGTTAACTCTCTTAGAAGGATTGAAG TGTATATAACTCCATGGATGATGGCATGATGAGACTAAGAGTTTTACAGTTATCTCTGGCTGATGTAGCATGAGTGATGA GAATTTGTTATCTCACATAGGCTCTGTTTTAAAGTTAACTTAGGGTGAGTTTGTTGGGCCAGGATTGTTTTCAACATAGG GGATGTTTATATGATCTAGAATGCATGTGTTACTTTTATAGATGAGTGATGTTGGAAAGTGTTCTCTTCAAGGAAATTCC TTAGTGAAAATTTAAATTCATAGATGTGGAAGTGTATTGTGGGATATCCAATGATCAGTCTGGTTGGTTTTCATCCAATG ATCAGTCTGAGTATGCTTTCGTGGTTTTTGCCTTTTTGGTAAAACATTGTGGATGCAATGCACTTGTACGTTTTGGGATT TTGACTTATTTCTAACTATTGACTTATCCTGTGCTTTTATCTAAGGTTGAGTCGTGCATTGTTTTGAGTTAATTTA

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0337600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAAGGAGGAAGAAAGAATTTGAAAAGGGCCACAGAGGAAACACATGTAACCCTTCAAGATGGGCAAAGCATCACGCA AGTGGTGTCTCTTCGAGGCTCCAATCTCATTGAGGTCATGGATGCACGTGGTGAGAAATCACTAGCTCTATTTCCTGCTA AGTTTCAGAAAAGCATGTGGATAAAACGAGGGAGCTTCGTAGTAGTTGATGACGCTGGAAAGGAAAAGGCTCTGGAATCA GGTAGCAAGGTTGCATGTCTTGTTTCTCAAGTTCTTTTCTATGAACAAGTTCGAGCACTACAGAAATCTCCAGAATGGCC TGAAATTTTTAAATCTGAGATGGTAGATGATTCAAACGAAACAACCACCTCCCAACAAGTAAATGAGATGGACGAGAGTG ATGACGATGATGATGGACTACCTCCATTGGAAGCCAATACAAACAGGATTAGGCCTCCTGAGTTCGATGAAGATACAGAA TCCAATTCAGATACAGATGATTGA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0337600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKGGRKNLKRATEETHVTLQDGQSITQVVSLRGSNLIEVMDARGEKSLALFPAKFQKSMWIKRGSFVVVDDAGKEKALES GSKVACLVSQVLFYEQVRALQKSPEWPEIFKSEMVDDSNETTTSQQVNEMDESDDDDDGLPPLEANTNRIRPPEFDEDTE SNSDTDD

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:2.40.50.140 View details on G3DSA:2.40.50.140 Search for proteins/transripts with this domain View external data on G3DSA:2.40.50.140	1	139	139	1.0E-29	–
PANTHER	PTHR21641 View details on PTHR21641 Search for proteins/transripts with this domain View external data on PTHR21641	1	167	167	6.2E-72	IPR039294 Show description in modal box View details on IPR039294 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF50249 View details on SSF50249 Search for proteins/transripts with this domain View external data on SSF50249	3	138	136	2.28E-22	IPR012340 Show description in modal box View details on IPR012340 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50832 View details on PS50832 Search for proteins/transripts with this domain View external data on PS50832	13	70	58	8.906	IPR006196 Show description in modal box View details on IPR006196 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00652 View details on SM00652 Search for proteins/transripts with this domain View external data on SM00652	18	107	90	4.6E-27	IPR001253 Show description in modal box View details on IPR001253 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01176 View details on PF01176 Search for proteins/transripts with this domain View external data on PF01176	22	71	50	4.0E-10	IPR006196 Show description in modal box View details on IPR006196 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	112	167	56	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003723 View details of GO:0003723 AmiGO InterPro QuickGO	Molecular function	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.	Subterm of View details of GO:0003676
GO:0003743 View details of GO:0003743 AmiGO InterPro QuickGO	Molecular function	Translation initiation factor activity	Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.	Subterm of View details of GO:0008135
GO:0006413 View details of GO:0006413 AmiGO InterPro QuickGO	Biological process	Translational initiation	The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.	Subterm of View details of GO:0044237 Part of View details of GO:0006412

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0337600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi6g1v0337600.1