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LotjaGi6g1v0337600.3

Overview

Field Value
Gene ID LotjaGi6g1v0337600
Transcript ID LotjaGi6g1v0337600.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Eukaryotic translation initiation factor 1A; TAIR: AT2G40780.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q3THJ3|EIF1A_MOUSE Probable RNA-binding protein EIF1AD; TrEMBL-Plants: tr|V7AS60|V7AS60_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0337600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:65208438..65214538) extracted from Lotus japonicus Gifu genome v1.2.

CATTGCTGACGCACGGCTTCACCACTTCCTTCACGCACGGCTTCACCTCTGTTCACCATTGTTCAATTGCTCCTTCCACC AAACCACCAAGCAGAAGCAGGTAAATTTCTTAATCAATTGTGACTTTGTCTCTGTCCTCTGACTCTGATTCTCTGTGAAT CGATTGTGTTGGCGTGAGTGGGTGAGGCCGTGAGGGTCTGGAACTGTATCTCTGTGAATCGATTGTGCTGGCGTGGGTGG GTGAGAGTGTGAGACGGTGAGTGAAGCAAGGGGAGCAGTCGGCGACGGTGGGTGAGTGAAGAGGGAGTGGCGGTGTGGGA AGGGGGTGAGTGAAGAAGTGAGACTGTGAGAGACAGAGAGAGTGTGGGCTATGTGGCCTGTGGGTGGGCGGTTTGTCAAT TTCATTGTGAAGCATGTAGTCATTGTGGTGAAAGAGTGAGTGAGAGAGACAGGGTGAGAATTTTGAATCTGATGATGGAT TCCACCCTCTGATGCTTTGCGTTTTTTTAAGCTATGATCCTCATGAAAGTTATGATCTATTCTTGATTCACATCATCCAC AAACTCTCCAGTTTTTTATTTCAATTTCGCACTCGTTTTCATCCATTATTCTGGTGGCTTTCCATTTTATTATACTGATA TGTTATATCATGTTGAAGGATTTTTCATACACTCGGATGCAACATTCATAGCCCAGTGGCATTTTTTAGCAAGGAATTGC CAGCTAGTTGCGATGTGTTATAAGGTGGTGGATTCTAACTCAAAGTTAATTCCTTAGTTTAGTATTTGATTTTATCTTAT TTAATATATATACCATTTTGGTCATTACATTATACACTAACATACAATTTTAGTCAAAGTTACTCATATGAAAGCATCCA AACGTAAATCACGTCTTTGTCAGATTCAATTTTATCCGATCCAAATCTCCTAACTGATCCAAACATATCCAATGTTGCCC AGGCTCCACAAAATTTCTGGATCCGCCACTGCCAGCAGCCACTCGCCCACCACGCCGCGCCACTGCACCTCCCGCCGCAT CAACCAGGTTTGCTCCTCCTCTCTTATCTCTTTCCCCTTGTCTACCTAAAGCCTATAATTTCAACGTTATGTATTGTTTG GTACTTTAATAACACAGCACACAATTAGCCTTACTTTCTGCTAGTGTTTTGTATAATTATGATTGTATCTTCAATCGTGT TTTTATTTATTTATTATTTTACCTATTACTGCAATGGAAAAATGAAAATTTGATATCTTGTGTTGCTTACATTCTTTCTG TTTTGCTCTGGTTACTTGTAACTTAGTTTAGAACTCAACTTTTCCATTGCTTAGTTTTGAACCGTTTGTTGGGTGACCAT GCCTGCTTCAATGAATCTTTCAAGAAGACATGGATTAAAATGATTGAACAGGCTTCTTTGCTGATTTGTTTGAATATACC ATTAATTTCATGTTGGTTAGTGGAGGTGTTTTTTTATCTAGTTAAATTCAACTGTTTCAGTGTTGGAGTTGTGTGCCATG TAAATGAAATGAGAATAGAGACAAATATATGCTAGATATTCTTCATATTCTGTATACACCACATAACTGACTTAACCTTG ATGTTTTGTTAAGAATGTAACTTTCAATGTAAGCAACCCATTCCTTTTGGACGCAGGGAGCACATCCACACATGTGCATG ACTATGTATAGTGCCTAGGTTTACTTATCATGATGATAGTGTTTTTGAGATAAACTGCATATCACAATTTACTTGGGTAT ATAGTTCTTATTTAAGTTACCATTTTAATTTGTCTCAAGGTAGCAGATTTAACCGTTGAGATGTTCTTAGTACAGAATCT TTTAAAACTGAGCTTTTAAAAATCCAAATAGCATGTAAAAGAGCTAGCCTCGTACAATTGCCAATTCACTATCAGAATCT TAACACTTAAGGCTACTGTCGTGGTCAGGTACAAGAGTTTAAACTTTAAATGGGGGTGTCAGGGCAGGGGGATATACAAG ATAAGAATAATTTAGAATCAAATTCTCACCACGTCAATAATAGTGTAGTAGTAGACTCAAGTAAAAGAAAATGGGATGGT AACTAATCAACCTCTAAACTCATATCTTAGCTAAGTAAAATCCAAATATCAATGAGGACCTCAAAAAGAATTAAGAGCTA AGTTAATCAAATCACGTCTTTCCTACACCAGGAAACATCAAGGGTCTAATCGTGGATGATTTTATGAAGTCATGAAGTCT TTACTGTGAGTTTTTATCCTTCAAAGCACTAATGTTTTGCAATCTCCCCCATTTCCACCTCCACCAGCGTGAGAAGAATA AAAGCAAGAGAAGTGAGAGATATAATGGAGGTGATGGGAAAAGAAGAGAAAGATAGGAAGAAAAAAAATAATGGATGGGA GGGAGGTAAAGTGGATGTGAATATATCAAAGTTGTCTTCAAAATGAGTTTAACATTCTGAGCTCTTTGGTTATCTCTAAA TTAAGGGTAAAAGTAAAAGTAATAAACTAATTATTCTAAACGTGAAATGAATAGACTCAAGGTTGTCAAATTCACAATTA TGCGTAAACTCCTTTAGAGTCCGTACCGAATTCACCAACAATGAAAAAAATACTTGTGAAAACCTGTTATGGTATACAAA GATAGTAAACTAGTACCATTGAAGATACATTAACCAAAGGAATTCAACATACCAACTTCATACTAAAGCAAACTTCAACA AAGGACAATAATAGAGTGCAATATTACTTAGTACATCTCCTAAAGCATGCATAATAACCAAATCATAAGTTCTTGTAGCA ATAACCAAGCAAGGGGCATTCTTCCTAGATTTAAATGCAACAACACATGTGTTGCTTGAAGACTTTGATGAACCAGTCTC ACACATTCTGATATGAAATATGAATAATATCAGAAAAAAAAAACAGAGTTCAGCAATTCAAGGCTCAGTTCAGTTAAAGG TTCAAAATTTCGATACCCAAAAAGCTGAATAGATAAACAGAGGGATGTGAAGGGGAGAAGAATTCAATGGTAGAAGAAGT GAATATTACTAGAAATCACTCACTGGTCACTGTGAAAGCAAGGGTGCGAGAAGGAGAAGCTCTTGCGAAACCTTGTTCAA GCTTCCGGCGGCGGAAAAGGAGAAGCATGGCAGCGGAGAAGCAACTCGCGGTGGCAGAGGAGCTATGTGAGGGGCGGTGG TGGTTCACGAGCAACAGGGTCTTCTGAGTTTCGAGACTCACCAAGAGAAAGGGTATGAAAACAAAGCCTCACTAGCTGAA CGGTGTCTTTCACGGTTTTGAAACAGTCACTGTTTTTATCTTTATACTTTTTTTTTTCTTGCAGAGACAGTAAAAGGAAA ATTGGAATGGTTTTTTTTACCTCTGGGATTAGGCTTTAAGATCATGTATTTAGAAAAAAATTCAGATTCTGATGCTGAGT ATTATGCTTTTGCAGTGCTGGAGATTATGCTTTCTTGTCCGTTTTAGTGGTTGAAAATTGAAATGATGCACTGGCTGGCA TTTGAAACCTCAGCTTATTTGTATTTCTGAACATGTATGAGATTGAGTGATATATAATTATATAAAGCAATGCTATTTAG AATGAAAATAGTAGACATAAAACACATGGTAGTTCAACAGGAAATCACGAGATTATTATAAAAAACAATTCAAATTGTTG TACAATTGAAATATTCCACATACTGTTTGAGCACTCTCGTCAAGTGCCATCTCGTGCTATTTAGTGTTACCGAATTATAT GTATTTCTAAGGCTGCAAATGTTTACATAATTTATAACAATTCATTTTGAAATATTTTCATGTGCATTTTTTTTTAAAAA AATTGTATTAATCTATTTAGCTTCCAATTGTGATATGCAGGAGAGTTTCGTGAGAAACCTTGGCAACAAGAAAATTGAAG TTTTTGGTGGCCATGAAAGGAGGAAGAAAGAATTTGAAAAGGGCCACAGAGGAAACACATGTAACCCTTCAAGATGGGCA AAGCATCACGCAAGTGGTGTCTCTTCGAGGCTCCAATCTCATTGAGGTACTGGTTTTTCAAGTTTTAACTCTTCCAAATT TTCCCTTTTCTGTATTTTATGCTGAGAAAACACCTACAAAATAATTGAGGTGAAATTTAAAAACTGTTAAAAAGAACAAA TCAATGAATATTGTATGGAAGTTCGCATCTGTGGAAAGAACAGGCATATTTATTGAAAAAGTAACAAGAAAAGAAACACA TTGTAGTTATTAACATAGATGATGGTTGGAAGTTCTACCCACAAACTTTGGTACTTCCTTTACTTTATGAGATTCTTAGG TTAACAACTTCTAATGGAAATTTGGGGTTTTCAGTGTTTTTACCAGCTCTGCAAGAAAGAAAATAGAACCCAAATTAGTG ATTGTTTCAAAAGCCGGAAAGAAAAAAATAAAAATGGAAAAACAAAGCAAGAAGACATGTGAATCCTGTTAATATTCAAG TAATGTCACGTCAATAGTCAATTCCTTTCGTCAACAGAGAGTGTGCAGACTGATTTGCAAGACTGTGTTTATATTAGTTT CTAGGTTTCTTTATGATCATGTTAATATTTTTCGGGTAAACGCCACACCATTGTTTACTTGTGCATATAGTACTTATTTA TCTTTTGATTCTTTTTGTCTTGATTTGTCTCAAGGTCATGGATGCACGTGGTGAGAAATCACTAGCTCTATTTCCTGCTA AGTTTCAGAAAAGCATGTGGATAAAACGAGGTTTGTCCTATTTATGAATCAATTGAATGCTTACTATAGAAATTTAAAAG CTACTCAATATGTTATCGACATTATTTTTATAACAAACAATTAATTGCTTTAGTGATAATTATTTCTCAATCTTGGTGAA CCAATGATTCTCTCTTATCATTGTTGATTTTCTCAAGCTCTGGACTTTAGTGAAAGCATTACTTGACGTATGCTCAATCT TGGAAAGGATAGTGCCTCTATCTTCAAATGTTCCTAACTAGCTCTTTTTGCTCAACCCTTTACTGTGTCATTCTTAAAAT AAAAATCTAAGCTGACCATATAGGTTATACAACTATTGAAAAACCAGGGCAAGTCCACTTGGCCACCTCATTTTTGTTGA GAAGTCCGTAACCTAACCGTATACATGGTGAACACTACTTGAAACATTAATTGCGGGCTATTTGCATAATCTGAAAATTG AACCGTGTCTTGGTTTTGAAAACCATATATATATTTGTTTTTCTTGGTCTGCCTCCACTTCATTGATCAACCAACCTTGA TGCTTTCTCAATGTGCAGGGAGCTTCGTAGTAGTTGATGACGCTGGAAAGGAAAAGGCTCTGGAATCAGGTAGCAAGGTT GCATGTCTTGTTTCTCAAGTTCTTTTCTATGAACAAGTTCGAGCACTACAGAAATCTCCAGAATGGTGTGCTCTTGTTTC CAGCGTTGATTTGTATAGCTTTATTTGCATTGCGCTCCCTTGATGAATAATCATATACTCACTATCTATATTGAACATGT TTTCTTGACGGATCACTCTCTGTTAAACTTGTATTTTACATGGTAGCATCTAATGGCATCTTAGTATCTTACCAATATAC TCATTTTTCAATCATTCTTTCCATGTAGGCCTGAAATTTTTAAATCTGAGATGGTAGATGATTCAAACGAAACAACCACC TCCCAACAAGTAAATGAGATGGACGAGAGTGATGACGATGATGATGGACTACCTCCATTGGAAGCCAATACAAACAGGAT TAGGCCTCCTGAGTTCGATGAAGATACAGAATCCAATTCAGATACAGATGATTGAATAACATAATTAGGTTTTCATACTT GCATATGGATGATTACATTCAACTTCAATCATCAATTCATGTAAAAGAATGTTCTTTTCTTATCTTCGTGTGCTGATTCT TCTGAGTATAGATGTTTCAACTTGTAACTGAACTCAAAAAAAAGAATTGAGTTTGCATTGACATGCCAAACTATAAAACA CAGACAGACCGTAAATTATTTGTTTGATTAATTGCCTTTTGAACTGCTTGATTTTCTTTGGATATTATTTTGAGTTTACA TGTATTCTTTATCGGAGTCAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0337600.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAAGGAGGAAGAAAGAATTTGAAAAGGGCCACAGAGGAAACACATGTAACCCTTCAAGATGGGCAAAGCATCACGCA AGTGGTGTCTCTTCGAGGCTCCAATCTCATTGAGGTCATGGATGCACGTGGTGAGAAATCACTAGCTCTATTTCCTGCTA AGTTTCAGAAAAGCATGTGGATAAAACGAGGGAGCTTCGTAGTAGTTGATGACGCTGGAAAGGAAAAGGCTCTGGAATCA GGTAGCAAGGTTGCATGTCTTGTTTCTCAAGTTCTTTTCTATGAACAAGTTCGAGCACTACAGAAATCTCCAGAATGGCC TGAAATTTTTAAATCTGAGATGGTAGATGATTCAAACGAAACAACCACCTCCCAACAAGTAAATGAGATGGACGAGAGTG ATGACGATGATGATGGACTACCTCCATTGGAAGCCAATACAAACAGGATTAGGCCTCCTGAGTTCGATGAAGATACAGAA TCCAATTCAGATACAGATGATTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0337600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKGGRKNLKRATEETHVTLQDGQSITQVVSLRGSNLIEVMDARGEKSLALFPAKFQKSMWIKRGSFVVVDDAGKEKALES GSKVACLVSQVLFYEQVRALQKSPEWPEIFKSEMVDDSNETTTSQQVNEMDESDDDDDGLPPLEANTNRIRPPEFDEDTE SNSDTDD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:2.40.50.140
1 139 139 1.0E-29 –
PANTHER
PTHR21641
1 167 167 6.2E-72
IPR039294
SUPERFAMILY
SSF50249
3 138 136 2.28E-22
IPR012340
ProSiteProfiles
PS50832
13 70 58 8.906
IPR006196
SMART
SM00652
18 107 90 4.6E-27
IPR001253
Pfam
PF01176
22 71 50 4.0E-10
IPR006196
MobiDBLite
mobidb-lite
112 167 56 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0003743
Molecular function Translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
Subterm of
GO:0006413
Biological process Translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
Subterm of
Part of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0337600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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