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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0341200 |
| Transcript ID | LotjaGi6g1v0341200.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Equilibrative nucleoside transporter family protein; TAIR: AT4G05120.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q9M0Y3|ENT3_ARATH Equilibrative nucleotide transporter 3; TrEMBL-Plants: tr|A0A072V578|A0A072V578_MEDTR Equilibrative nucleoside transporter 6; Found in the gene: LotjaGi6g1v0341200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65497378..65501125) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGAAAACTTAAAATATTTGGCATTGCTCTCTTGAGCTTTCCTCATGGCCTTCATAAAGGAACAAATTTATTGGTCAA CTTGTCAATTATTTAACCGACTCTATGTTAAATTGTCAATGTCATCATAATGATTATTGACAATTTAATATGAATTAGAA GCCATTAAGCCAATGATAAAGGACAAATGAAGAAACCAGATCTGTGCTTAACCATTTTCATATTACGAGGTTGCCGGTTC AAGAGGTGCACATCATCAGTAGAACACAAACATATCATTATCACCGCCATTACTATCTTCAAATGGAAATGAAATGTCAC ATAATCAATTCTCTAGACCTCATTTGTCATCGTTCTCCTTGATTTATCTGCCATGGCAACAAACAATAGGTGAAGTTCTT TACTATTTTGTTTCTATTTTCCATCCTACATCTTGTATTTTCCCTTATGATTATTGATATGAAATAGATAAAATGAAGGT GCTTAGTTCAATGATATTAGGGGTTTCCTATCATTGTCTTCAATTAGCACTAGATTTTTCCATTATTTTACCTTAGTGAT GTTTGGTTGTAGCACTTTCCAGCAGGAGATATCTCATAAACTGAACCACTTTTGAGTTTCTCTTTTGTGTCATTTATTCG TATACTTCAACATTATTTGTACTTGTGATGTTGCTCTGGCTCCATCACTTAATGCATGTTTGGAAACTCGATCGAAAATC ACATGTAAAGCAAAACCATGTTGGACAGAAGCAAAAACTAACGGAAGTTGCTTCTGTCCACCATGAGTGAATGAGTTTCC AAACATTCACTAAATATTTCTAGAATTAATTTTGACACCAAAAAGCTACGACTGTGCTTTTTCCCATAAATGAGTTTGAG TGTAGATGAATTTCTAAACATGTACTTAATTGTTTCTTATTGTAATGGTTTCTTTTGTGAGTGAGAATGAGATGGTCATG TTTACTACAAATGGCAGTGGAGCAACAAGAAAGCCTGAGGTAAGTGTCCTGTTTTATATTCCTTGGAGAATAGGTTACTA GGATTTCTCAGGAACAAAGTTTGTTAACTTGCCTGTGTGTTTTCAATAGGGAAAGTACAAAGCAATGGTAGTTTGTTTCA TTCTTGGACTAGGATCCCTTGTTTCATGGAACAGCATGCTGACTATAGCAGATTACTATTACAAATTGTTCCCCGTAAGT AAGTCACGGTGCTTTTAGTTTCTTTTATAAGACTTGACATCATCCTACAAAGATTGATTCTTAGGAATAAGTGCAATTCA GTAACTGATTAGAAGCTTTCTTTTCATTTGAAGAAATATCATCCTTCAAGGGTACTAACCCTGGTTTATCAACCATTTGC ACTTGTAACAATGTTAATACTGGCATATTATGAGTCAAGGATCAATACTAGAATGCGGAATTTGGCTGGATTCACACTTT TCTTTGCTAGCACTTTCTTGGTTCTTGTTGTAAGTACACCATTTCAAATTCCATAATTTGCATTATCTGATTTTCTTAAA TTCATGTATGACCTATTTTCTTTGGCTTATATGGAGCTTGAACAATCTGTCGTGACAGTTGGACCTAGCAACATCAGGGA AAGGTGGAATTGAACCTTATATTGGTATATGTGTGCTAGCTGCTTGTTTTGGAATAGCAGATGCTCATGTGGAAGGTGGC ATGATAGGAGACCTGTATTTTATGTGCCCTGAGTTTATCCAGGTTGGTCTTTCATTTAATTTATTCAATATTTTAACATT ACCCTTGTCAGTTATAATTCCTTCAAAAAATATATATATTTGGAGAAGGGGTTGCACTTGCTGCTATTTTTTTTGCCTAA ATTGTTAAGTGTATGCAGTCCTACCTTGCTGGTTTGGCAGCATCAGGGGCTCTAACTTCTCTTCTGAGAATTCTGACCAA GTTAGCTTTTGAGAAATCTCATAATGGACTTCGCAAGGGAGCTAGTATGTTATTCTTCTTTTACAATGCTCATATATATT GGTTTCTTATATTTGTCTTCTCTTGATGAATTGATTTTGTTTGAGATAGTGTATGTTTGGGAATGAGTCTGGTCACCACG TTTTCTATCCAGATCCACGTCTAGCGGAAGCAAATAATATGTACAGTTTGCCCCAACGTGCATTGGATGATTGGAGTGTG TGCATGACTCATTTCCAAACATAGTTGTTTTCTAGTTAAAACTTTTGTAGGATGTATAATGATTATGACATTCTATCTTC TCAAATCAGTATAATGGTCCCTAACTCCATATTGCTCTAGAATTTTATTGATTGCTTTTGTTATTTTTGCAGTACTATTC TTTGCAATCTCCACACTCATCGAGTTTCTTTGTATAATCCTATATGCAATATACTTCACCAAATTGCCTATAGTGAAATA TTACCGTTCAAAAGCAGCCTCAGAGGGATCAAAAACAGTTTCAGCTGACCTAGCTGCTGCTGGCATTCAAACACAGACTA ATGAAGTAACATAAATATGCAAGAACATAAATACATTACTCCTACATGTAATATCTTTATTATGTTCTAAAAAATTGGAA TTTTTGTAGGGTGGATATGATAACAAACAAGAAGAACGGTTGAGCAACAAACAGTTGTTTCTTGAGAACCTTGATTATGC AGCTGGAATATTTCTTATATATGTAGCAACTCTGTCAATCTTCCCTGGGTTCTTGTATGAAAACACTGGGTCACATCAGC TAGGCACATGGTAAGTGCTTATTTATGCTTTGTCTTCTCAATTCAACTGTCTTGTGACATTACATGATATACATCATTTT AATTTGTTTTGTTAACGTAATTTAATTATAATGTTTACATGATATACCTGACCATGGCCTTCAGAAAAAAATTTACTAGG TCCTTTGATATGTGTTTTCTGTTATGTTCCTTTGATGACTGATGAAATTGATTGGGAAACATAAGTTTATATGTTGTTAC TATTTATCTTTTTAGGTACCCAATTGTTTTGATTGCTATGTATAATGTTGTGGATTTCATAGCAAGATACATTCCCCTTG TGCAAAGTCTGAAGTTGGAATCCAGAAAGGGTCTACTAATAGCAATCCTGTCTCGATTCTTGCTGATTCCAGCATTCTAC TTTACAGCAAAATATGGTGACCAAGGATGGATGATCCTCCTCACCTCCTTCTTGGGACTTACCAATGGCTATCTAACTGT ATGTGTTCTTACCGTGGCACCAAGAGGTTACAAGGCAAGTGTACACAACCCACAATTCATAAGTACATGGATCTTAAACT AATGGGTTTTGTCCACTTACATTAGTTATTTACTTAATGGTGAAACTAGGACTGAAAAGATATTAATGATCATTTTTTCT CATTTTCATCATTAAAATAGTTTGTTCAATTGATTTACATGTCATGAGTTAACTCTAAATTATGAACTAATTTTATATTT TGTGTTGTTGCAGTCTCCTGAGCAGAATGCTTTGGGCAATTTGCTTGTGGCGTGTCTTTTAAGTGGCATATTTGTTGGGG TTTGTCTTGACTGGTTATGGCTCATAGGTAAAGGATCATTCTAAAAATACATTTGAAGTCACATTGTTACTGATAAATCT TTGGCGTATTCGCATGCCCTGTAATTTGAATATTCCTAAATCAATACACACCATACTCTGATACATATTCATTTTACTAA CTATATTTCATGAGAATGGTGCACATTAACCTTATGAAAGATATATATGAGAGGGTCTTCCTTCATGC
CDS sequence (LotjaGi6g1v0341200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACAAACAATAGTGAGAATGAGATGGTCATGTTTACTACAAATGGCAGTGGAGCAACAAGAAAGCCTGAGGGAAA GTACAAAGCAATGGTAGTTTGTTTCATTCTTGGACTAGGATCCCTTGTTTCATGGAACAGCATGCTGACTATAGCAGATT ACTATTACAAATTGTTCCCCAAATATCATCCTTCAAGGGTACTAACCCTGGTTTATCAACCATTTGCACTTGTAACAATG TTAATACTGGCATATTATGAGTCAAGGATCAATACTAGAATGCGGAATTTGGCTGGATTCACACTTTTCTTTGCTAGCAC TTTCTTGGTTCTTGTTTTGGACCTAGCAACATCAGGGAAAGGTGGAATTGAACCTTATATTGGTATATGTGTGCTAGCTG CTTGTTTTGGAATAGCAGATGCTCATGTGGAAGGTGGCATGATAGGAGACCTGTATTTTATGTGCCCTGAGTTTATCCAG TCCTACCTTGCTGGTTTGGCAGCATCAGGGGCTCTAACTTCTCTTCTGAGAATTCTGACCAAGTTAGCTTTTGAGAAATC TCATAATGGACTTCGCAAGGGAGCTATACTATTCTTTGCAATCTCCACACTCATCGAGTTTCTTTGTATAATCCTATATG CAATATACTTCACCAAATTGCCTATAGTGAAATATTACCGTTCAAAAGCAGCCTCAGAGGGATCAAAAACAGTTTCAGCT GACCTAGCTGCTGCTGGCATTCAAACACAGACTAATGAAGGTGGATATGATAACAAACAAGAAGAACGGTTGAGCAACAA ACAGTTGTTTCTTGAGAACCTTGATTATGCAGCTGGAATATTTCTTATATATGTAGCAACTCTGTCAATCTTCCCTGGGT TCTTGTATGAAAACACTGGGTCACATCAGCTAGGCACATGGTACCCAATTGTTTTGATTGCTATGTATAATGTTGTGGAT TTCATAGCAAGATACATTCCCCTTGTGCAAAGTCTGAAGTTGGAATCCAGAAAGGGTCTACTAATAGCAATCCTGTCTCG ATTCTTGCTGATTCCAGCATTCTACTTTACAGCAAAATATGGTGACCAAGGATGGATGATCCTCCTCACCTCCTTCTTGG GACTTACCAATGGCTATCTAACTGTATGTGTTCTTACCGTGGCACCAAGAGGTTACAAGTCTCCTGAGCAGAATGCTTTG GGCAATTTGCTTGTGGCGTGTCTTTTAAGTGGCATATTTGTTGGGGTTTGTCTTGACTGGTTATGGCTCATAGGTAAAGG ATCATTCTAA
Protein sequence (LotjaGi6g1v0341200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATNNSENEMVMFTTNGSGATRKPEGKYKAMVVCFILGLGSLVSWNSMLTIADYYYKLFPKYHPSRVLTLVYQPFALVTM LILAYYESRINTRMRNLAGFTLFFASTFLVLVLDLATSGKGGIEPYIGICVLAACFGIADAHVEGGMIGDLYFMCPEFIQ SYLAGLAASGALTSLLRILTKLAFEKSHNGLRKGAILFFAISTLIEFLCIILYAIYFTKLPIVKYYRSKAASEGSKTVSA DLAAAGIQTQTNEGGYDNKQEERLSNKQLFLENLDYAAGIFLIYVATLSIFPGFLYENTGSHQLGTWYPIVLIAMYNVVD FIARYIPLVQSLKLESRKGLLIAILSRFLLIPAFYFTAKYGDQGWMILLTSFLGLTNGYLTVCVLTVAPRGYKSPEQNAL GNLLVACLLSGIFVGVCLDWLWLIGKGSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 31 | 31 | - | – | |
| PIRSF | 2 | 426 | 425 | 1.8E-81 | ||
| PANTHER | 16 | 426 | 411 | 8.8E-228 | ||
| PANTHER | 16 | 426 | 411 | 8.8E-228 | – | |
| SUPERFAMILY | 27 | 415 | 389 | 5.75E-5 | ||
| TMHMM | 30 | 52 | 23 | - | – | |
| Phobius | 32 | 55 | 24 | - | – | |
| Phobius | 56 | 66 | 11 | - | – | |
| TMHMM | 67 | 86 | 20 | - | – | |
| Phobius | 67 | 85 | 19 | - | – | |
| Phobius | 86 | 96 | 11 | - | – | |
| Phobius | 97 | 117 | 21 | - | – | |
| TMHMM | 99 | 118 | 20 | - | – | |
| Phobius | 118 | 122 | 5 | - | – | |
| Phobius | 123 | 141 | 19 | - | – | |
| TMHMM | 123 | 145 | 23 | - | – | |
| Pfam | 136 | 422 | 287 | 6.3E-33 | ||
| Phobius | 142 | 161 | 20 | - | – | |
| TMHMM | 158 | 180 | 23 | - | – | |
| Phobius | 162 | 184 | 23 | - | – | |
| Phobius | 185 | 195 | 11 | - | – | |
| TMHMM | 195 | 217 | 23 | - | – | |
| Phobius | 196 | 217 | 22 | - | – | |
| Phobius | 218 | 275 | 58 | - | – | |
| TMHMM | 269 | 291 | 23 | - | – | |
| Phobius | 276 | 295 | 20 | - | – | |
| Phobius | 296 | 306 | 11 | - | – | |
| TMHMM | 306 | 328 | 23 | - | – | |
| Phobius | 307 | 327 | 21 | - | – | |
| Phobius | 328 | 338 | 11 | - | – | |
| Phobius | 339 | 358 | 20 | - | – | |
| TMHMM | 340 | 357 | 18 | - | – | |
| Phobius | 359 | 363 | 5 | - | – | |
| Phobius | 364 | 388 | 25 | - | – | |
| TMHMM | 367 | 389 | 23 | - | – | |
| Phobius | 389 | 399 | 11 | - | – | |
| Phobius | 400 | 423 | 24 | - | – | |
| TMHMM | 402 | 424 | 23 | - | – | |
| Phobius | 424 | 429 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleoside transmembrane transporter activity | Enables the transfer of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide) from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Nucleoside transmembrane transport | The directed movement of nucleoside across a membrane. |
Expression pattern of LotjaGi6g1v0341200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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