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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0342100 |
| Transcript ID | LotjaGi6g1v0342100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin thioesterase; TAIR: AT1G28120.1 ubiquitin thioesterase otubain-like protein; Swiss-Prot: sp|Q8LG98|OTUBL_ARATH Ubiquitin thioesterase otubain-like; TrEMBL-Plants: tr|I1ME83|I1ME83_SOYBN Ubiquitin thioesterase; Found in the gene: LotjaGi6g1v0342100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65546913..65550912) extracted from Lotus japonicus Gifu genome v1.2.
TTCATCTTCTTCATTTTGCATAAAAAATATTAATTTCCGAAAAGAAATAGAAATAGAAATGAAATTAATCCTTGAGTTAA TTTGGGGTTGATTACATCTTTTGCGAATTTAGGGATTTGAGTTCACTCTCACTCTCACTCTCGCATTTCAATTTCAATTT CAATTTCACACTCGCTCTCGCTTCTGCGAAAGGTGTTGTTTTTGATTCCTTCCCTTTCTTTCTCAATTTTAATTTCTTCA TTCGCAAATTGCAGTTTCATAACCTAATAATTAATATTCTCTCATCTCTTTATTCTTTTATGTTGTAATTTCAACGCAAT CTTATAATTTTGTATGAATGGATGCTAATTTTGATAGGGTTATCGTTATTGCTTGATTGAATTGCTGCTGTAAAAGTAGT GGAAAATTTGTGAATTGCTGCTGCTGTAAGAGGAAGAAGAAGAAGATGCAGAATAAAGAAGCAGTCTCTGAAGATGGTGA AATAGGGTCTGAGTGGAACAATTTTGGAGACGATGATATAATGCAGCAGCAACATTCAATTCAAGCTGATCAAGCCAACA AAGTTCCATTTGTTGGTGACAAGGCAAGAAATTGAAACTTCTGAGTGTAATTGTTTAACTGTGTATATAGTAGGGTTGTT AATGGCGGATAGCGTATTGTAGCGGCAAGCCCAAAAAACGCGCTATAGCGGTGAACCCTCAGAGTGCTACGCTATAGCGC GCTATTAACAAGCCTGGACTATATAGTGCTAATAACAATTAAAAAGCTATGAATTTGATATATTTAAGGAAATAGATACA AGTTATTGCATTCTGGTTGCATTATATGATATTTGATAATGAGTAAAATTCAAAGATTTCATGTGGAAAATTCGCAGGAG CCGTTATCTAGCTTGGCTGCTGAATATCAATCAGGCAGTGCTATTTTGCTCGAGAAAATCAAGGTTTGCTCAACCTTTTA TATCTATTTCCTGCATCTTATCATGTTCTTGAATCATTCTCTTATTTCTTCTTAATGCAGGTGCTTGATCAGCAATATGC TGCCATTCGGCGAACTCGCGGAGATGGAAACTGCTTCTTTCGCGGCTTCATGTTTTCGTACCTTGTATGTTTTATTGTAT CTTAGCTTAGAAGCATCTAGTTTAACATCAGATGGTTATTCTTGGGGTCTATGGATTATAGAATCAAATACTCTGATAAT TTGATCAATTTATAAATTTTCTTTTTTAAGGAGCATGTTCTGGTATCTCAAGACCAAGCTGAAATTGATCGTATCCAAGC CAATGTTGAAAAAAGTAGAACAGCACTGCAGACCTTGGGTTACACAGAGTTAACTTTTGAAGATTTTTTTTCGGTAACTT ATCAATTGCATTTGTCTCTGGGTTTTTGTACATATATTTCTGCTTCTTATTTCGTAAATATCTTAAGATATACTAGCAAG AAATGCATACCCACTAAACAAAAATGCTCCAAAAATAGGTGTATTGCACTGGGTGGTGTACTGAATAATCTCTGCTAACG TATGGGAAATGCCGGACTAGATATTCCATATATCCAGTTTTAATTTGTGAACAGTTTCTTTAGTGATGTGAATATCAGGT GACAAAAATTTATTGATATAGGGAATAGGGATGGATTTTATTTTTTATTCAAATTTTCCCCAAAATTTGAAGAAATGAAA TATATGTGCTAATTACCATGTGATGGCTCGTTTGTTTTCAATGTTATGATACTTACTCTCCAACTCTTCCTTCCTTTCAA AATGGTAATAGAGGATGTTAACTTTGAACCTGAGATCCTATGAAATCTTAAACTGAAAATTCCAGGCCCCATAAAGTTCA TTTATGGAGCTGGCAAGGTGCTTTCAATTGGAAATGGCTAATTAGACCTATGGTCTGGTGTGTTTTTGGTCATGGAAGAA GTTATTCATAACATTTTTTAGTAACTTATCCAATAAAATTATAAAAGCTTATGATTGTTAAAAAAGTTTGTAAACCATAC AATAGAACAAATATAGGCTGCATTCAATCTTAAGAAAGTTTTCTATTGAAGGAAAGAATTTGGAAAATTCTATGGGATAT ACGTCTTCTGTTTGCCTTGGTGAATAGATTGGCAAATCCAGAAATATATTGTACATTTATTTGAAAATGCTTTGACTGGA CATCTGGGAACCCCCAAAAAATGTTTCAATTTTTTAATCTGTAGAGGTGCTTTTAGAGGTTTAAAAGCTTATACGTGCAA TTGTTTTCCTCTTCTAAGGATATAAATTTACCTTTTATTATCTCACTGTAAAATATTTTCAGTTATTCATTGAGCAGCTG GAAAGTGTTATTCAAGGGAAAGAGACTTCCATAAGGTGTTAACTTGTTCCTTCACCATGAATTTACATTGACAATCTTGA TGTGGGCATATGATATGCTCTCAGGATATTCATTATCACCATTAATTTTTTATCTGACACTAATTTTCTTATTCTTATTC TTTCTGCATTGCGACTCTCTATGTATGAACTTAATATATATATGTTTTATGATCACAGTCATGAAGAGCTTGTTCTTAGA AGCCGAGATCAGTCAATATCTGATTATGGTGAGTGACTTAAAACCTGTCCCAATTTTCAAATGCCTTGATCTCATCTTTT TTATATGCCTTGACAATTTTGCTTTGGTAGTTGTTATGTTCTTCAGATTTGTTACCTCTGCTGAAATACAGAAGCGCTCA GAATTTTTTGAACCTTTCATACTGGGCTTAACTAACACGACAGTTGAGCAGGTTTGTTCAGTGCTAAGAATTTTTTCTGT CCCTCCAAAAGTTGTTAGTATATCTAGTATCTGATAAAATATAAAGAAGACAACCATCACTTCTATTGTTGAAAAACTGT CCATGGTCTAAGTCTTCTGATTTTAATATATTATCCCCCATGTCTCTGTGTTTTTAGTTTTGCAAATCATCTGTTGAACC AATGGGTGAAGAGAGCGATCATGTGCACATTACTGCCCTTTCAGACGCATTGGGCGTTCCAATTCGTGTTGTGTACCTTG ACCGCAGCTCATGTGATACTGGTGGTGTCAGTGTTAATCATCATGATTTCATGCCAGTTGCTGGTGATCTCCCAAATGCT AGTAGCTCTGAAAAGAATACTCCTTTCATCACGTTACTATATCGCCCTGGTCACTATGATATCCTCTACCCAAAGTGATG AGTGATGACCTCTTGGGAAGCTCCGTTACTTGTTGCTTTTTATATGATCTGTACTTTGTATCTTGTTAATGTTGAATGGT CAATTGTCTAAAACGTGTTACCTATTTTGAAGAGATTGATCAACAAAGTACATCAAGATTAACACATTAATAATCAAAAC TCACCTTGATTGCTATTTTCCCATTCCATTATAGTTGGCTTACCTTGCTTTCATTCTTCCAAGTATCTATGTGCATTGGT AGTTAGTAATTAGTGTGATGGCATGGCTCTTGGTGGCTCCTGCAGTAACGATGCAGATGCATTATCTCATCCTGAATGTT ACCGTTCCGCACCTATAATCATTTTTTCCATCAATCCATGTAGTTTTTATGGATCATCTGGCTGTGTGTGGACCATATAT CTTTAGTACTTTTGGGTTTTGGCAGGGATGTGAATGTGATAATGGGCAATGGGATTGGATTGGTGGTTGGGTTTCTTATG TGTTATGGCAAACAAAAGTTCTCAAAGGGACCTGAAAATTCGTTCGCTCAGCCTATCCAAAATTCATTATTATTTTTGGC TAGCTCATGTACTTTCGACTTCAACCAAGGTATGGAATTTTCATCCACGCAATGATGAAACCTAGGTTATTTAGAATATT GGCAGTAAAACGTAATAAATTTATCTGTACAGAAGTTTTTAGGTACAGATCTTGTTATAGTAAATTCATTTGTAACTATA TTTTCCACTATAATCAAGGCCTAGAATTGCAGGTCATTTATATTTGTGTAAATTAGTTTATATCAACTAGTAAATCCAAG
CDS sequence (LotjaGi6g1v0342100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAATAAAGAAGCAGTCTCTGAAGATGGTGAAATAGGGTCTGAGTGGAACAATTTTGGAGACGATGATATAATGCA GCAGCAACATTCAATTCAAGCTGATCAAGCCAACAAAGTTCCATTTGTTGGTGACAAGGAGCCGTTATCTAGCTTGGCTG CTGAATATCAATCAGGCAGTGCTATTTTGCTCGAGAAAATCAAGGTGCTTGATCAGCAATATGCTGCCATTCGGCGAACT CGCGGAGATGGAAACTGCTTCTTTCGCGGCTTCATGTTTTCGTACCTTGAGCATGTTCTGGTATCTCAAGACCAAGCTGA AATTGATCGTATCCAAGCCAATGTTGAAAAAAGTAGAACAGCACTGCAGACCTTGGGTTACACAGAGTTAACTTTTGAAG ATTTTTTTTCGTTATTCATTGAGCAGCTGGAAAGTGTTATTCAAGGGAAAGAGACTTCCATAAGTCATGAAGAGCTTGTT CTTAGAAGCCGAGATCAGTCAATATCTGATTATGTTGTTATGTTCTTCAGATTTGTTACCTCTGCTGAAATACAGAAGCG CTCAGAATTTTTTGAACCTTTCATACTGGGCTTAACTAACACGACAGTTGAGCAGTTTTGCAAATCATCTGTTGAACCAA TGGGTGAAGAGAGCGATCATGTGCACATTACTGCCCTTTCAGACGCATTGGGCGTTCCAATTCGTGTTGTGTACCTTGAC CGCAGCTCATGTGATACTGGTGGTGTCAGTGTTAATCATCATGATTTCATGCCAGTTGCTGGTGATCTCCCAAATGCTAG TAGCTCTGAAAAGAATACTCCTTTCATCACGTTACTATATCGCCCTGGTCACTATGATATCCTCTACCCAAAGTGA
Protein sequence (LotjaGi6g1v0342100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQNKEAVSEDGEIGSEWNNFGDDDIMQQQHSIQADQANKVPFVGDKEPLSSLAAEYQSGSAILLEKIKVLDQQYAAIRRT RGDGNCFFRGFMFSYLEHVLVSQDQAEIDRIQANVEKSRTALQTLGYTELTFEDFFSLFIEQLESVIQGKETSISHEELV LRSRDQSISDYVVMFFRFVTSAEIQKRSEFFEPFILGLTNTTVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLD RSSCDTGGVSVNHHDFMPVAGDLPNASSSEKNTPFITLLYRPGHYDILYPK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PIRSF | 12 | 291 | 280 | 3.8E-95 | ||
| PANTHER | 19 | 290 | 272 | 2.5E-106 | – | |
| PANTHER | 19 | 290 | 272 | 2.5E-106 | ||
| Gene3D | 35 | 289 | 255 | 6.2E-81 | ||
| Pfam | 36 | 290 | 255 | 1.6E-88 | ||
| SUPERFAMILY | 42 | 290 | 249 | 1.86E-58 | ||
| ProSiteProfiles | 75 | 291 | 217 | 14.17 | ||
| Gene3D | 81 | 232 | 152 | 6.2E-81 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi6g1v0342100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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