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LotjaGi6g1v0346400.1

Overview

Field Value
Gene ID LotjaGi6g1v0346400
Transcript ID LotjaGi6g1v0346400.1
Lotus japonicus genome version Gifu v1.2
Description Major facilitator superfamily transporter; TAIR: AT2G22730.3 Major facilitator superfamily protein; Swiss-Prot: sp|Q9FLG8|SPNS2_ARATH Probable sphingolipid transporter spinster homolog 2; TrEMBL-Plants: tr|I1M2J2|I1M2J2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0346400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:65875099..65882924) extracted from Lotus japonicus Gifu genome v1.2.

GGAGGGAGTACTTTCATGGTGAAATTAGTGTGACATTACAATTTTCTACAGTGGAAGAGTACGTCTAGTATTGTCAGAGT GAGAAAGTTAGGTGTCAAAGTGTTATGACGGGATGGCAGGGCCTTATTTCCTCTCAACCATGCTTTCTTAATCTGTGGAG AAACTCATCTCATCCAGACATCCACCATGATTCCCGCAACATCGTGGTTCACACCTAAGAGGTAATGTACCTTCTCTATT CTTCATGTTTTCATGTTGTTGTTGCTGTTGTTTAATCTCTTTTATCTTGTTTTGTAGGCTACTTGCTACCTTTTGTATGA TTAACATGTTAAACTATTTGGATCGAGGAGCAATAGCAAGCAATGGTGTTAATGGAAGCAGAGGAAGTTGCACTGAAGGT GGTACCTGCACTTCTGGCACAGGAATACAGTAAGATACACTTAGGAGTGACCACTTCTCTTATCTCTAGGCCTTCAATTT TCCATGCAATGTGATTTCAAGTTGTTGGTTTTATTCCAATTTTCAGGAGGGGTACTTTTCCAAAATAATTAAGCTAATTG GATCAGGAAACCAAAGATTTTACCTTTACATATTTTGAAAGGCAGTTCTCACATGATAGGAAATCTGAAATGCTACTCAA AATTAATCATAATTATCGGTTATATTTTGCATGTGTATCCTCAATCATTGTCAAACAAAACTAGTGACTGGAAAAACATG ATTCATGTGATTCATGCAAGATATCCTTAAATTATTGCAATAAGGTGAGAAAGAAATTTTGGGGATTTTGTTTGCTTGCA AACCTAGTCTTTGTCCTATGTTATGCATGCTTATCACTATGGCATGAGGCACATCACCTATCAAGGCGTAGACTTGACTT TATGGTATGGGAGATAACTATAACTGTTGCCTGTTTGAGCTTTTACTTGTATCCTATGCCATGACATTAATACTGTAATC TGCTGAAGTAAATTTTCAGCAATTGACTAGTTTTTGACAATATGTTTCTCTCCATGTGTGTAGGGGGGAATTTAACTTGA ACGATTTTGAAGATGGAGTTTTATCATCTGCTTTTATGGTTGGACTTCTTGTTGCTTCTCCAATATTTGCCACTCTGGCG AAAAGATAGTAAGTTCAATTATTTGTGTTGCAGTTAGATGAATGCTATTTTTATCATTACACATTTATTAGATTAGATAT TCAGTTCAGTGTATTAATTCTTCAGAAGATAGGATGTAAATGAATGAAACTTCTGAAAGGTGAACAGGTTTTTACACAAC CACAAATCAATTATATTGAATTTCAAATCGGCCTTCTTGACATGCAATTTGTGTGTACTTGATGCAATCCTTTTGGCTAT GATTTTCACATTTTTAAATGAAACCATATAACTAAAATGTTTGTGGAGCAAAGTATCTTAAATTGGTAACAGTATGACTG TAAATTTATTGGTCATTTTTTCCATTAAACTGAACTGCTTATGTTTGATAGACATAATAAGGAATAACAAGAACTTCTGA CCTTATATCTTTCAGATATGTGCAGCATGTATGATTATTGTGATTTGTAGCTAATATCATTAACTTGCAAATGAATTCGT TCGCAATTCTTATATTTTGCAGTGTAAATCCATTTAGACTTATTGGAGTTGGATTGTCAGTTTGGACTCTTGCAACGTTG TGTTGTGGGTTTTCTTTTAATTTTTGGTCCATTTCAGTCTGTCGCATGTAAGTGGTCGAATTTCCTTTTTTTTCAAGTTA TGCGATTTTGATTTGGAGGAGTTAAATAATAGTACAAAATATAAGAAGAATTGTCTTAAGTTTCACTAGTGCTTTCATTA TTCTCCATAGGATGCTTGGTGTTGGTGAGGCTTCGTTTATAAGTCTTGCAGCACCTTTTATTGATGACAATGCTCCAGCT GCTCAGGTTTGTTTCTTTCCATTTTCTAAAGATCTTTATATAATCAGAGTCAAGAATCAAGTCATGCTTTTGAAATGAAA TGATGCACTTTTTGCTTCGTTTCAATATTTTAAGGGTTTATAACTGGATGAAGTCTTTATATATCCTTCTTCGCAATTGG ATTGCCATTTGTTATATAATTACTTGCTGTTCTTTTTTCTTCTTTTTTTCTTTTTTCTTCCTGGTGCAAAACTCTGTCTC ATACTAGTGCCTACCTGTATCAGAAAACAGCATGGCTTGGAATATTTTGCATGTGTATACCATCAGGATATGCCCTTGGC TATGTCTATGGTGGTTTGGTAAGTTTATATCAGAGTTTTCGTACCACTGTTGAGTTAAAAACGGTAAATGACAATGAAAA AATTTTAGAAGTTTTTATTTAGTAGAAAGTAGGTTTATAATTAATTTGGAATGACAATCTTTTCGTTCCCTTTTATATAT AAACAATACATTATCCTTTTAGGAAAAACAAACATTGGATTACAACCCTTAAGATAACTTAAGATACTCTCAAATACTAA AACACAATCAACTTTTGTATTTTGCTTCTTCTTTTGAAGTATGTAAATTACTTGACCTCCCTATTTTTTTCTTTATGTGA TTGTTAACAGGTTGGGAGTTATTTTGGTTGGCGTTATGCATTTTGGGCAGAGTCTTTATTGATGCTTCCATTTGCTATTT CAGGATTCTGTATGAAGCCTTTGCAGTTGAAAGGTTCACATCTGTCTTGCTTTGATTTCTTTGAAACCCCTATTATTGTT TTCTATCTGTAAACTACTTTTGGATCCAGGTATTGCACCTGCTGATTCAAAAAAGGCATTGGCACCTGAGACAGTCCTGT CAGGAGTTCAAGGTACACTAAGAACTACAAATTATCTAAAGTATAAACTTTATACTATAAACACAAAATCTCTATTTTTT AAGTACCATTGCCCCATGTCAATCCCTATACCAATTCTTAGAAGTTTTACTTTTTAGAAGATACTGAGAGTTTATTAACC AAATCTACTATTTTTCTCGGAGAAATTTCCATGTCGGAAGTGTGTATTCCATTATTCCCCCTTTCCTGGTTTTGTGAGAA GTAATATTCTTTTTCTTTTAGGGAAAATAGAAATGTAGAGTTGATAGTCTGATTAATACTCATTCCCCACCTAATATATT GCAAGTAACTGAAAATTTAGGTTTGTTACATTGGCTTTTCTAATTCACAATATCTCTTTATTAGCCTTAACAAAATTCAC TCGTTTGATTCAAAGTTACGGACCCATCTAATGGCGACGAGTCCCTGGCCTTAATAAAGGAAGAGTTCAGAGATAGAAGC TCAAATGACTGTTCCAAGTAAGAATGGTTACCTTCTGAAATAACTACTTTCTCATTGATTTATTGTGTCTTTTACTATCC AACATCCATCTTTTGTGGCTGATGTATTCAACATTCTATTTGATTGATTATTATTCTAGGTCGAAATCTGCGACCAAGGG GTTTGATCAGTTCTCAAGGATTTTTAAAGATATGAAAGTGCTTTTGCTTAATAAGGTTTATGTTGTCAGTGTTCTTGGTA CTTCTTCCTCCCACTGATCCACTGTATGCATCAACTAATTTCATAAAATGTACTTTACCTTGTTAGTAATTTCATGTCAG AAGCTTCTATGTGGATTGGTTACTGATAGAATATAGAATATTCCTTATTCTATCAGTTACTTCCCTGTGAACTTCATATC TTTATATCCTATATGATATATGCATTCTATTTTTGTTGGCCATCATATTGTTTTATCATATCTGGTCAGTCATTTAACTC CATAAGTTGAATATCTATCCATAGGTTATGCAGCATACAACTTTGTATTAGGTGCTTACGCATATTGGGGGCCCAAAGCA GTCTATAACATATATAAGATGGTGAGATTCATCCATATTATTTTACTATTATACGATTTTACTACTTTCTCATTTATGTT GTTGTAATATTGACTTTGTTTGCTCCGGTAGAATGATGCAGATTTGATATTTGGAGGAATTACAATTGTATGCGGAATAG TGGGCACAATAGCTGGAGGCTTTGTTTTGGATTTTATGACTAACACCTTATCAAATGCATTTAAGGTTGGTATTCAAATT AAGAGAAGGGTTCTGGCATTCCTTTTTTTATACCTTTTTATTACGCGTTTCTCAGTGCACTAGTTTTATCTTTTGAATCT GTTGCCTATTTACCTTTACCCTACCAGTTCACCTGTTGATCTCAGAAACATATACTTGAGTGTTCCTTACAATAGTATGT AATCTTATGAACATGATAGTATGTTCCTTACAATAGTATGTAATCATATATTTGAAGTCCTTTGTATGATACTGGAATGC ATGTCCCATCTGATATAGGCAAATTATGTTTTACACTTTTACCCAAGCATTTTGTTTCCCTTTCATTGCTCTGTCATAGT ACTAAACACTCTAAATTAAATTCTTTTGCAGCTTCTCTCAATAACAACATTTCTTGGGGCAGCACTTTGTTTTGGTGCCT TCTTATGCAGAAGCATGTATGGCTTCCTAGCTCTTTTCTGTATCGGTGAACTTCTTGTTTTTGCCACTCAGGTACCTTCC CTCCATACGAGGAAAATCCTTAAGTTTTTTATTGTTATTTTGAAGCAATATTCTTTTACATGCTTATAATCAATGAATAT TCTATAGATTCTGAGTTTTCCTCTGTATACTAAGCATTTGATCTTGGTCTTTCCTAGTTAAGTTCTCGATGAATAAATGT GTTATTAAGTGAAACTTCCTTAAAATTTGAAAAATTAGATGCAAACTAGCTCTCTGAGAACTGAATCTCATTGTATGATT AGTTGTTTTTTTTTTTAATTTTAATCAGTGAATCAATGCTTGTTCTGTTCTCTGGAGTAGATGATTTTTGTCCCTTCTTT CTCTTCAGTCTATTAGTATACGGTGGACATCCCTGCCTCTTTATATCAATTTGACAAGATAATATTATCCTGAAACTTGA AAGATAATCTTTTAGGGCCCGTTTGGTGGCCAGGACAAGATAGGATAGGACAGGATAATAATCATATCCTGTTGTTATAT GTTGTTTGTTGCGCCAGCAGGATAGGATAACACTATCCTGTCTCCTATCCTATCCTGTCAATCATGTGTAAAAGTTATCC TGAGGGGAGAGCTAGGATAGAACAGGATAGGATACCAGTTATATATTTTATTTCAGTATCCTAACTCCAAATTAATTTAT TTTAATATTATATAATTAATAATAATATTAATTAATAAATGTAAAATATTAATTTAACTAAAATAAAAAATAAATAAAAT TATTATTCATAAATAGTAAAATAGACTACTCACTTACAAATACTAATTTATTAATAATAATAGACTAATTTAATATTTCC ATCTCCTACTATTTAAAAATTATTTATCTACTTATATAATAATTTAAATATAAAATATTTTTGAAATAATAATATTTTTA ATTTAGTTAATTTTTATTGTTTATCACGTGTCACAACTAAGTGAAAACCATTGATTACAAATATTGATTTTTTAATAGTA ATAGATTAATTTTTTATTTTCATCTCCTATTATTTAAAACTACTTATCTACTTGTATAATAATTTATAATTAAAACATAA AGTACTTTTGAAATAATAATATTCTTAATTTAGTTAATTTTTATTGTTAATTATCACGTGTCACAACTAAGTGAAAACCA ATTGGTTAACTGCATAATTTTATTTGAAATATAGGCTATCTTCAAAAAAAAAAGACTAATTAATAAAATTTAAATTAATT TTATTTATTTTAAAATATAGACGCATTCATGAAAATGTAAATGAATTAAATTTAATAGAATGATCAATTTTAAATATATT TTTTATTCAAATATAAATCTGATACATTTTTCCTTACCATATCTTGTCTTTATCATGTGCAGGATATGATAAGAGTCTAT CCTGCTCTTATCCTATCCTGTTGCTATCCTGTTCACATATCATTCCTATCATATCCTATCCTGACCACCAAACGGGCCCT TAGAGTGCTGAGGTTGTATATCATATCTAGATTAGAAAAATCCTGACTTCTGTATTTTTATGTATGAGCTGAGATCCATT TGATTACAATTGCTCCACAGAAACCATCTTGTAAGCCTGACCGGAGGCTTGCGATTTTTTTCAGGGTCCTGTGAATTTTG TATGTCTCCATTGTGTTGAACCAAGTATGAGACCTCTATCTATGGCTATGGGTATTGTTACTATTCATGTCTTTGGAGAT GTACCTTCCTCGCCTCTAGTTGGAGTTCTCGAGGTTCGCCTTTAATAGTTTAGCCCCCTTTTTTGCAACCTGCCTTTATA GTTTTATTTGTTAAGTAACATGTTTTCAAGTGCATTACTGCCTCAGCAATCCTTTCGCTAATGATTTTAGTTAACTTAAG CAGAATTGCTGAACAATCAGCATCGTTTTTACTTTGAAGTTGTTGATTAGGGTTGCCAAGGTGGAAATTGTTTCTTTTCA GAGTCAAAACTACATATTATGGCCCTTGGGACAGGGATGGGTTGATAGAATATTTAGGGAGATGATAGGTACTAGCAGTG AATGAGAAGAACAATGATTGTAATTCAAGATTAGCGATGGTTCTGGTATTCGAGATATCAGAACTCTCCCAAGTATCCCT GATTACAATCTAGATACCTTCTATTTCCCTCTCCCTTTTATTTATAACATCTATCTCCTCACTCTAACTAACTTATTAAC TAACTAACTAACGGTTACTTAACTAATGCTAATTAACTCTCTTCCTTCAACTAACTATCGTTCTACACTTCTACTAACTA ATCATAACAACAATAACAACCTCTCCTTAAGAGGCCTAATTCCTCTCTGGAGATTTCTTAAGTTTAATCCATCATTTCAT TTGTATTGGAAGTGTTCTCCTCAATGTCATAAGCCTAACATAGTTTACATTAATTGCATTAATGGTCATAAACTCATCAT ACATTTTAAGAGGTGTGAATGACTTAAAATTTATCCCCAAAAATTGGCTGTTCTAATTCAAATAACTTCACAGTTTAATT GTTTAAATGTCCATTACTTGGCAAACAGAGGGTGAGAGGCGGAGATGCTGAGAAAATTACAGGTCTCAGAATGTACTGTG ATATACAAGGTTCTGATGATTGTTCATGCAATCTGCAGGATAGCATTAACAACTGGAGAGTGACTTCATTGATTCTAACA GCCATATTGTTTCCGGCAGCTGGAATATGGTTTATAGGTATGTCATCATGGAATTTTTTTTGTTGATTTATGACAAAGAA TTCTTGATATTAATTCTTTCGACATGTTATTATTCAGGATAATCATAATCAAATGGTAAATCCTGAACTAGTGTGTTGTG ATTCATGTAAATTATGTCAGGAATATTTTTGCATAGTGTGGATAGATTTGAGGAAGACAGTGAGCATGAAGTGTCAAATG TTCAAAGGTCAAACACCATGCCATTGCTTCAAGAGAAGACGTCAGAAAGTTCAGCGTTTCCTGCTCAGTCCCAAGAATGC TGATTTCTTGTTTTAGTTTATGCCTTCCCAAGCACAAGTTATTTTGCACAATCTAGAGTATCATTAGCTTATTTCTCTGT ACATTTGTTATTTGTAGAAGTATGTGTTTGCTTTTTGTTAATGGAAATCATAGAGCATATTTTAATTTATGTTTCACCTT GTTAAGTCCCACATTGTTTAAAGATATGACTACTAAAGTGCTTATAAGTGGGAAGACAATCCTCGCCTCTTCAGTTATCT TTTGAGTTGCGTCAGGTCTCTCGAATTCTATTACTTCTTGTGCAAAGTTATCCTTATAATTTAATT 

CDS sequence (LotjaGi6g1v0346400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATTCCCGCAACATCGTGGTTCACACCTAAGAGGCTACTTGCTACCTTTTGTATGATTAACATGTTAAACTATTTGGA TCGAGGAGCAATAGCAAGCAATGGTGTTAATGGAAGCAGAGGAAGTTGCACTGAAGGTGGTACCTGCACTTCTGGCACAG GAATACAGGGGGAATTTAACTTGAACGATTTTGAAGATGGAGTTTTATCATCTGCTTTTATGGTTGGACTTCTTGTTGCT TCTCCAATATTTGCCACTCTGGCGAAAAGATATGTAAATCCATTTAGACTTATTGGAGTTGGATTGTCAGTTTGGACTCT TGCAACGTTGTGTTGTGGGTTTTCTTTTAATTTTTGGTCCATTTCAGTCTGTCGCATGATGCTTGGTGTTGGTGAGGCTT CGTTTATAAGTCTTGCAGCACCTTTTATTGATGACAATGCTCCAGCTGCTCAGAAAACAGCATGGCTTGGAATATTTTGC ATGTGTATACCATCAGGATATGCCCTTGGCTATGTCTATGGTGGTTTGGTTGGGAGTTATTTTGGTTGGCGTTATGCATT TTGGGCAGAGTCTTTATTGATGCTTCCATTTGCTATTTCAGGATTCTGTATGAAGCCTTTGCAGTTGAAAGGTATTGCAC CTGCTGATTCAAAAAAGGCATTGGCACCTGAGACAGTCCTGTCAGGAGTTCAAGTTACGGACCCATCTAATGGCGACGAG TCCCTGGCCTTAATAAAGGAAGAGTTCAGAGATAGAAGCTCAAATGACTGTTCCAAGTCGAAATCTGCGACCAAGGGGTT TGATCAGTTCTCAAGGATTTTTAAAGATATGAAAGTGCTTTTGCTTAATAAGGTTTATGTTGTCAGTGTTCTTGGTTATG CAGCATACAACTTTGTATTAGGTGCTTACGCATATTGGGGGCCCAAAGCAGTCTATAACATATATAAGATGAATGATGCA GATTTGATATTTGGAGGAATTACAATTGTATGCGGAATAGTGGGCACAATAGCTGGAGGCTTTGTTTTGGATTTTATGAC TAACACCTTATCAAATGCATTTAAGCTTCTCTCAATAACAACATTTCTTGGGGCAGCACTTTGTTTTGGTGCCTTCTTAT GCAGAAGCATGTATGGCTTCCTAGCTCTTTTCTGTATCGGTGAACTTCTTGTTTTTGCCACTCAGGGTCCTGTGAATTTT GTATGTCTCCATTGTGTTGAACCAAGTATGAGACCTCTATCTATGGCTATGGGTATTGTTACTATTCATGTCTTTGGAGA TGTACCTTCCTCGCCTCTAGTTGGAGTTCTCGAGGATAGCATTAACAACTGGAGAGTGACTTCATTGATTCTAACAGCCA TATTGTTTCCGGCAGCTGGAATATGGTTTATAGGAATATTTTTGCATAGTGTGGATAGATTTGAGGAAGACAGTGAGCAT GAAGTGTCAAATGTTCAAAGGTCAAACACCATGCCATTGCTTCAAGAGAAGACGTCAGAAAGTTCAGCGTTTCCTGCTCA GTCCCAAGAATGCTGA 

Protein sequence (LotjaGi6g1v0346400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIPATSWFTPKRLLATFCMINMLNYLDRGAIASNGVNGSRGSCTEGGTCTSGTGIQGEFNLNDFEDGVLSSAFMVGLLVA SPIFATLAKRYVNPFRLIGVGLSVWTLATLCCGFSFNFWSISVCRMMLGVGEASFISLAAPFIDDNAPAAQKTAWLGIFC MCIPSGYALGYVYGGLVGSYFGWRYAFWAESLLMLPFAISGFCMKPLQLKGIAPADSKKALAPETVLSGVQVTDPSNGDE SLALIKEEFRDRSSNDCSKSKSATKGFDQFSRIFKDMKVLLLNKVYVVSVLGYAAYNFVLGAYAYWGPKAVYNIYKMNDA DLIFGGITIVCGIVGTIAGGFVLDFMTNTLSNAFKLLSITTFLGAALCFGAFLCRSMYGFLALFCIGELLVFATQGPVNF VCLHCVEPSMRPLSMAMGIVTIHVFGDVPSSPLVGVLEDSINNWRVTSLILTAILFPAAGIWFIGIFLHSVDRFEEDSEH EVSNVQRSNTMPLLQEKTSESSAFPAQSQEC 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 505 505 8.9E-261
Phobius 1 67 67 -
PANTHER 1 505 505 8.9E-261
SUPERFAMILY 6 465 460 6.15E-49
ProSiteProfiles 13 472 460 17.545
CDD 14 468 455 1.45879E-80
Pfam 53 417 365 2.4E-27
Phobius 68 88 21 -
TMHMM 68 87 20 -
Phobius 89 94 6 -
Phobius 95 119 25 -
TMHMM 97 119 23 -
Phobius 120 124 5 -
Phobius 125 143 19 -
Phobius 144 154 11 -
TMHMM 155 177 23 -
Phobius 155 173 19 -
Phobius 174 184 11 -
TMHMM 181 203 23 -
Phobius 185 204 20 -
Phobius 205 284 80 -
Phobius 285 306 22 -
TMHMM 285 307 23 -
Phobius 307 321 15 -
TMHMM 322 344 23 -
Phobius 322 346 25 -
Phobius 347 352 6 -
TMHMM 351 373 23 -
Phobius 353 373 21 -
Phobius 374 378 5 -
TMHMM 378 400 23 -
Phobius 379 403 25 -
Phobius 404 414 11 -
TMHMM 412 434 23 -
Phobius 415 437 23 -
Phobius 438 448 11 -
TMHMM 449 471 23 -
Phobius 449 468 20 -
Phobius 469 511 43 -
MobiDBLite 481 511 31 -
MobiDBLite 484 511 28 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Transmembrane transporter activity Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0346400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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